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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLB838
Library SL
(Link to library)
Clone ID SLB838
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16455-1
Original site URL
Representative seq. ID SLB838Z
(Link to Original site)
Representative DNA sequence 
>SLB838 (SLB838Q) /CSM/SL/SLB8-B/SLB838Q.Seq.d/
XXXXXXXXXXTCCCAGAAGCCCGTCCAGGTGACAATGTAGGTTTCAACGTTAAAAACGTT
TCAGTCAAAGAAATTAAAAGAGGTATGGTCGCTGGTGACTCCAAAAACGATCCACCACAA
GAAACTGAAAAATTCGTTGCTCAAGTTATCGTCCTCAACCATCCAGGTCAAATCCATGCT
GGTTACTCACCAGTCTTAGATTGTCACACTGCTCACATTGCCTGTAAATTCACTGAAATC
GTCGATAAAGTTGATCGTCGTACTGGTGCCGTCGTTGCCAAAGAAGGTACTGCCGCCGTC
GTCTTAAAGAATGGTGATGCCGCTATGGTCGAATTAACCCCATCTCGTCCAATGTGTGTT
GAATCCTTCACTGAATACCCACCATTAGGTCGTTTCGCCGTCAGAGATATGAGACAAACC
GTCGCCGTCGGTGTCATCAAATCAACCGTCAAGAAAGCCCCAGGTAAAGCCGGTGATAAG
AAAGGTGCTGCTGCCCCATCAAAAAAGAAATAAATAAATAATATTTCTTAATAAATAAAA
A
sequence update 1998. 4.19
Translated Amino Acid sequence 
---PEARPGDNVGFNVKNVSVKEIKRGMVAGDSKNDPPQETEKFVAQVIVLNHPGQIHAG
YSPVLDCHTAHIACKFTEIVDKVDRRTGAVVAKEGTAAVVLKNGDAAMVELTPSRPMCVE
SFTEYPPLGRFAVRDMRQTVAVGVIKSTVKKAPGKAGDKKGAAAPSKKK*innis**ik
Translated Amino Acid sequence (All Frames) 
Frame A:
---prspsr*qcrfqr*krfsqrn*krygrw*lqkrsttrn*kircssyrpqpsrsnpcw
lltslrlshcshcl*ih*nrr*s*ssywcrrcqrrycrrrlkew*crygrinpissnvc*
ilh*iptirsfrrqryetnrrrrchqinrqespr*sr**ercccpikkeink*yflink


Frame B:
---PEARPGDNVGFNVKNVSVKEIKRGMVAGDSKNDPPQETEKFVAQVIVLNHPGQIHAG
YSPVLDCHTAHIACKFTEIVDKVDRRTGAVVAKEGTAAVVLKNGDAAMVELTPSRPMCVE
SFTEYPPLGRFAVRDMRQTVAVGVIKSTVKKAPGKAGDKKGAAAPSKKK*innis**ik


Frame C:
---qkpvqvtm*vstlktfqskklkevwslvtpktihhkklknsllklssstiqvksmlv
thqs*ivtlltlpvnslkssiklivvlvpslpkkvlppss*rmvmplwsn*phlvqcvln
pslnthh*vvspsei*dkpspsvssnqpsrkpqvkpvirkvllphqkrnk*iiflnk*k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSE380 (VSE380Q) /CSM/VS/VSE3-D/VSE380Q.Seq.d/                        971   0.0
VSD740 (VSD740Q) /CSM/VS/VSD7-B/VSD740Q.Seq.d/                        971   0.0
VSD380 (VSD380Q) /CSM/VS/VSD3-D/VSD380Q.Seq.d/                        971   0.0
VSD312 (VSD312Q) /CSM/VS/VSD3-A/VSD312Q.Seq.d/                        971   0.0
VFO616 (VFO616Q) /CSM/VF/VFO6-A/VFO616Q.Seq.d/                        971   0.0
VFO348 (VFO348Q) /CSM/VF/VFO3-B/VFO348Q.Seq.d/                        971   0.0
VFN666 (VFN666Q) /CSM/VF/VFN6-C/VFN666Q.Seq.d/                        971   0.0
VFN474 (VFN474Q) /CSM/VF/VFN4-D/VFN474Q.Seq.d/                        971   0.0
VFN472 (VFN472Q) /CSM/VF/VFN4-C/VFN472Q.Seq.d/                        971   0.0
VFN448 (VFN448Q) /CSM/VF/VFN4-B/VFN448Q.Seq.d/                        971   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(X55973) D. discoideum EF1-I gene for elongation factor 1 al...   971   0.0    1
(AU285021) Dictyostelium discoideum gamete cDNA clone:FCL-AA...   971   0.0    1
(AU284628) Dictyostelium discoideum gamete cDNA clone:FC-BF1...   971   0.0    1
(AU284420) Dictyostelium discoideum gamete cDNA clone:FC-AT2...   971   0.0    1
(AU284342) Dictyostelium discoideum gamete cDNA clone:FC-AN0...   971   0.0    1
(AU284225) Dictyostelium discoideum gamete cDNA clone:FC-AA2...   971   0.0    1
(AU264545) Dictyostelium discoideum vegetative cDNA clone:VS...   971   0.0    1
(AU264497) Dictyostelium discoideum vegetative cDNA clone:VS...   971   0.0    1
(AU263935) Dictyostelium discoideum vegetative cDNA clone:VS...   971   0.0    1
(AU263821) Dictyostelium discoideum vegetative cDNA clone:VS...   971   0.0    1
dna update 2009. 2.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X55973_1(X55973|pid:none) D. discoideum EF1-I gene for elongatio...   295   5e-79
X55972_1(X55972|pid:none) D. discoideum EF1-II gene for elongati...   295   5e-79
(P18624) RecName: Full=Elongation factor 1-alpha;          Short...   295   5e-79
AY542532_1(AY542532|pid:none) Cladonema radiatum translation elo...   226   4e-58
AJ581004_1(AJ581004|pid:none) Axinella verrucosa mRNA for elonga...   224   1e-57
AY582829_1(AY582829|pid:none) Acanthamoeba culbertsoni ef1a gene...   223   2e-57
AY643820_1(AY643820|pid:none) Arcyria denudata elongation factor...   223   3e-57
AJ549292_1(AJ549292|pid:none) Podocoryne carnea mRNA for elongat...   223   3e-57
Y09023_1(Y09023|pid:none) G.cydonium mRNA for elongation factor ...   221   7e-57
AY643816_1(AY643816|pid:none) Lycogala epidendrum elongation fac...   221   9e-57
protein update 2009. 6. 1
PSORT 

 psg: 0.75  gvh: 0.50  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for SLB838 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLB838Z
3' end seq. 
>SLB838Z.Seq
----------TCCCAGAAGCCCGTCCAGGTGACAATGTAGGTTTCAACGTTAAAAACGTT
TCAGTCAAAGAAATTAAAAGAGGTATGGTCGCTGGTGACTCCAAAAACGATCCACCACAA
GAAACTGAAAAATTCGTTGCTCAAGTTATCGTCCTCAACCATCCAGGTCAAATCCATGCT
GGTTACTCACCAGTCTTAGATTGTCACACTGCTCACATTGCCTGTAAATTCACTGAAATC
GTCGATAAAGTTGATCGTCGTACTGGTGCCGTCGTTGCCAAAGAAGGTACTGCCGCCGTC
GTCTTAAAGAATGGTGATGCCGCTATGGTCGAATTAACCCCATCTCGTCCAATGTGTGTT
GAATCCTTCACTGAATACCCACCATTAGGTCGTTTCGCCGTCAGAGATATGAGACAAACC
GTCGCCGTCGGTGTCATCAAATCAACCGTCAAGAAAGCCCCAGGTAAAGCCGGTGATAAG
AAAGGTGCTGCTGCCCCATCAAAAAAGAAATAAATAAATAATATTTCTTAATAAATAAAA
A
Length of 3' end seq. 531
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -