SLB811
Library SL
(Link to library)
Clone ID SLB811
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16455-1
Original site URL
Representative seq. ID SLB811Z
(Link to Original site)
Representative DNA sequence
>SLB811 (SLB811Q) /CSM/SL/SLB8-A/SLB811Q.Seq.d/
XXXXXXXXXXAACTCCCAGAAGCCCGTCCAGGTGACAATGTAGGTTTCAACGTTAAAAAC
GTTTCAGTCAAAGAAATTAAAAGAGGTATGGTCGCTGGTGACTCCAAAAACGATCCACCA
CAAGAAACTGAAAAATTCGTTGCTCAAGTTATCGTCCTCAACCATCCAGGTCAAATCCAT
GCTGGTTACTCACCAGTCTTAGATTGTCACACTGCTCACATTGCCTGTAAATTCACTGAA
ATCGTCGATAAAGTTGATCGTCGTACTGGTGCCGTCGTTGCCAAAGAAGGTACTGCCGCC
GTCGTCTTAAAGAATGGTGATGCCGCTATGGTCGAATTAACCCCATCTCGTCCAATGTGT
GTTGAATCCTTCACTGAATACCCACCATTAGGTCGTTTCGCCGTCAGAGATATGAGACAA
ACCGTCGCCGTCGGTGTCATCAAATCAACCGTCAAGAAAGCCCCAGGTAAAGCCGGTGAT
AAGAAAGGTGCTGCTGCCCCATCAAAAAAGAAATAAATAAATAATATTTCTTAATAAATA
GCATTTTATAATAATTTTAAAAA
sequence update 1998. 4.19
Translated Amino Acid sequence
---LPEARPGDNVGFNVKNVSVKEIKRGMVAGDSKNDPPQETEKFVAQVIVLNHPGQIHA
GYSPVLDCHTAHIACKFTEIVDKVDRRTGAVVAKEGTAAVVLKNGDAAMVELTPSRPMCV
ESFTEYPPLGRFAVRDMRQTVAVGVIKSTVKKAPGKAGDKKGAAAPSKKK*innis**ia
fynnfk


Translated Amino Acid sequence (All Frames)
Frame A:
---tprspsr*qcrfqr*krfsqrn*krygrw*lqkrsttrn*kircssyrpqpsrsnpc
wlltslrlshcshcl*ih*nrr*s*ssywcrrcqrrycrrrlkew*crygrinpissnvc
*ilh*iptirsfrrqryetnrrrrchqinrqespr*sr**ercccpikkeink*yflins
il**f*k


Frame B:
---LPEARPGDNVGFNVKNVSVKEIKRGMVAGDSKNDPPQETEKFVAQVIVLNHPGQIHA
GYSPVLDCHTAHIACKFTEIVDKVDRRTGAVVAKEGTAAVVLKNGDAAMVELTPSRPMCV
ESFTEYPPLGRFAVRDMRQTVAVGVIKSTVKKAPGKAGDKKGAAAPSKKK*innis**ia
fynnfk


Frame C:
---sqkpvqvtm*vstlktfqskklkevwslvtpktihhkklknsllklssstiqvksml
vthqs*ivtlltlpvnslkssiklivvlvpslpkkvlppss*rmvmplwsn*phlvqcvl
npslnthh*vvspsei*dkpspsvssnqpsrkpqvkpvirkvllphqkrnk*iiflnk*h
fiiilk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSE380 (VSE380Q) /CSM/VS/VSE3-D/VSE380Q.Seq.d/ 995 0.0
VSD740 (VSD740Q) /CSM/VS/VSD7-B/VSD740Q.Seq.d/ 995 0.0
VSD380 (VSD380Q) /CSM/VS/VSD3-D/VSD380Q.Seq.d/ 995 0.0
VSD312 (VSD312Q) /CSM/VS/VSD3-A/VSD312Q.Seq.d/ 995 0.0
VFO348 (VFO348Q) /CSM/VF/VFO3-B/VFO348Q.Seq.d/ 995 0.0
VFN666 (VFN666Q) /CSM/VF/VFN6-C/VFN666Q.Seq.d/ 995 0.0
VFN474 (VFN474Q) /CSM/VF/VFN4-D/VFN474Q.Seq.d/ 995 0.0
VFN472 (VFN472Q) /CSM/VF/VFN4-C/VFN472Q.Seq.d/ 995 0.0
VFN448 (VFN448Q) /CSM/VF/VFN4-B/VFN448Q.Seq.d/ 995 0.0
VFN415 (VFN415Q) /CSM/VF/VFN4-A/VFN415Q.Seq.d/ 995 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(X55973) D. discoideum EF1-I gene for elongation factor 1 al... 977 0.0 1
(AU285021) Dictyostelium discoideum gamete cDNA clone:FCL-AA... 977 0.0 1
(AU284628) Dictyostelium discoideum gamete cDNA clone:FC-BF1... 977 0.0 1
(AU284420) Dictyostelium discoideum gamete cDNA clone:FC-AT2... 977 0.0 1
(AU284342) Dictyostelium discoideum gamete cDNA clone:FC-AN0... 977 0.0 1
(AU284225) Dictyostelium discoideum gamete cDNA clone:FC-AA2... 977 0.0 1
(AU264545) Dictyostelium discoideum vegetative cDNA clone:VS... 977 0.0 1
(AU264497) Dictyostelium discoideum vegetative cDNA clone:VS... 977 0.0 1
(AU263935) Dictyostelium discoideum vegetative cDNA clone:VS... 977 0.0 1
(AU263821) Dictyostelium discoideum vegetative cDNA clone:VS... 977 0.0 1
dna update 2009. 2.19
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

X55973_1(X55973|pid:none) D. discoideum EF1-I gene for elongatio... 296 2e-79
X55972_1(X55972|pid:none) D. discoideum EF1-II gene for elongati... 296 2e-79
(P18624) RecName: Full=Elongation factor 1-alpha; Short... 296 2e-79
AY542532_1(AY542532|pid:none) Cladonema radiatum translation elo... 227 1e-58
AJ581004_1(AJ581004|pid:none) Axinella verrucosa mRNA for elonga... 225 7e-58
AY582829_1(AY582829|pid:none) Acanthamoeba culbertsoni ef1a gene... 224 1e-57
AY643820_1(AY643820|pid:none) Arcyria denudata elongation factor... 224 2e-57
AJ549292_1(AJ549292|pid:none) Podocoryne carnea mRNA for elongat... 223 2e-57
Y09023_1(Y09023|pid:none) G.cydonium mRNA for elongation factor ... 223 3e-57
AB326305_1(AB326305|pid:none) Solea senegalensis SseEF1A4 mRNA f... 222 4e-57
protein update 2009. 6. 1
PSORT

psg: 0.75 gvh: 0.50 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
28.0 %: cytoplasmic
20.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: endoplasmic reticulum

>> prediction for SLB811 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLB811Z
3' end seq.
>SLB811Z.Seq
----------AACTCCCAGAAGCCCGTCCAGGTGACAATGTAGGTTTCAACGTTAAAAAC
GTTTCAGTCAAAGAAATTAAAAGAGGTATGGTCGCTGGTGACTCCAAAAACGATCCACCA
CAAGAAACTGAAAAATTCGTTGCTCAAGTTATCGTCCTCAACCATCCAGGTCAAATCCAT
GCTGGTTACTCACCAGTCTTAGATTGTCACACTGCTCACATTGCCTGTAAATTCACTGAA
ATCGTCGATAAAGTTGATCGTCGTACTGGTGCCGTCGTTGCCAAAGAAGGTACTGCCGCC
GTCGTCTTAAAGAATGGTGATGCCGCTATGGTCGAATTAACCCCATCTCGTCCAATGTGT
GTTGAATCCTTCACTGAATACCCACCATTAGGTCGTTTCGCCGTCAGAGATATGAGACAA
ACCGTCGCCGTCGGTGTCATCAAATCAACCGTCAAGAAAGCCCCAGGTAAAGCCGGTGAT
AAGAAAGGTGCTGCTGCCCCATCAAAAAAGAAATAAATAAATAATATTTCTTAATAAATA
GCATTTTATAATAATTTTAAAAA
Length of 3' end seq. 553
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -