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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLB802
Library SL
(Link to library)
Clone ID SLB802
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U09141-1
Original site URL
Representative seq. ID SLB802P
(Link to Original site)
Representative DNA sequence 
>SLB802 (SLB802Q) /CSM/SL/SLB8-A/SLB802Q.Seq.d/
GAACAAATTAAACAACAAAAATTACAACAACAAAGAATTGAACAAGAACAAAGAGAGAAA
TTAGAACAAGAACAAAGAGAGTGGGAAAGAGAAAGAGAAAGAAAAGAACAATTAGAAAGA
GAAAAACAACAGCAACAACAACAACAACAACAAAGACAATCCTCAAATAATAATAATAAT
AATAATAATAATAATAATXXXXXXXXXXTTCTTGCCATCGGTAATTTTCATTGATGAAAT
CGATTCTTTACTTGCTGCTAGAACAGAGAATGAAAATGAAGCATCGCGTCGTATTAAAAC
AGAGTTTTTAATTCAATGGGATGGTGTTGCTGGTAATGCAGAGGATCAAATGCTGTTAAT
CGGCGCCACCAATAGACCCGATGAATTGGATGAAGCAGCTCGTAGACGTATGACCAAACG
TTTGTATATCCCCTTACCAGATAATGAAAGTCGTTTGGCTTTAGTTAAAAACTTGTTAAA
GAATGAAAATCATGAAATTTCACCCGACGATATGCAAAATATCGCTTCAATTTCCGATGG
TTATTCTGGTGCCGATATGAAATCATTATCAACCGAAGCTGCCTATCAACCAATTCGTGA
CTTACGTGGTGAGATTGAAAGTGTTGAAAAAGAATCAATTCGTCCAATTTGTTTAAATGA
TTTCTTATTAGCTGTTAAAAGAGTAAAACCATCTGTAGCTAAAAAAGAATTGGATGCATA
TATTGATTGGAATGATAAATTTGGTGCATTAAGTTAAAAGAATAGAAAATCACATATATT
TACACAAAAAAAACACAATCGCTAATAAAGTTTAAATCTAATTAA
sequence update 1999. 1.11
Translated Amino Acid sequence 
EQIKQQKLQQQRIEQEQREKLEQEQREWERERERKEQLEREKQQQQQQQQQRQSSNNNNN
NNNNNN---

---FLPSVIFIDEIDSLLAARTENENEASRRIKTEFLIQWDGVAGNAEDQMLLIGATNRP
DELDEAARRRMTKRLYIPLPDNESRLALVKNLLKNENHEISPDDMQNIASISDGYSGADM
KSLSTEAAYQPIRDLRGEIESVEKESIRPICLNDFLLAVKRVKPSVAKKELDAYIDWNDK
FGALS*knrkshiftqkkhnr**slnli
Translated Amino Acid sequence (All Frames) 
Frame A:
EQIKQQKLQQQRIEQEQREKLEQEQREWERERERKEQLEREKQQQQQQQQQRQSSNNNNN
NNNNNN---

---FLPSVIFIDEIDSLLAARTENENEASRRIKTEFLIQWDGVAGNAEDQMLLIGATNRP
DELDEAARRRMTKRLYIPLPDNESRLALVKNLLKNENHEISPDDMQNIASISDGYSGADM
KSLSTEAAYQPIRDLRGEIESVEKESIRPICLNDFLLAVKRVKPSVAKKELDAYIDWNDK
FGALS*knrkshiftqkkhnr**slnli

Frame B:
nklnnknynnkelnknkern*nknkesgkekekeknn*keknnsnnnnnnkdnpqiiiii
iiiii---

---schr*fslmksilyllleqrmkmkhrvvlkqsf*fngmvllvmqrikcc*sappidp
mnwmkqlvdv*pnvcispyqimkvvwl*lktc*rmkimkfhptickislqfpmvilvpi*
nhyqpklpinqfvtyvvrlkvlkknqfvqfv*misy*llke*nhl*lkknwmhiligmin
lvh*vkrienhiylhkkntiankv*i*l

Frame C:
tn*ttkitttkn*trtkreirtrtkrvgkrkrkkrtirkrkttattttttktilk*****
*****---

---laignfh**nrfftcc*nre*k*siasy*nrvfnsmgwccw*crgsnavnrrhq*tr
*ig*sss*tydqtfvypltr**ksfgfs*klvke*ks*nftrryakyrfnfrwlfwcrye
iiinrsclstns*ltw*d*kc*krinssnlfk*flisc*ksktics*krigciy*le**i
wciklke*kityiytkktqslikfksn*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLB802 (SLB802Q) /CSM/SL/SLB8-A/SLB802Q.Seq.d/                       1176   0.0
SSE117 (SSE117Q) /CSM/SS/SSE1-A/SSE117Q.Seq.d/                         42   0.013
VFF769 (VFF769Q) /CSM/VF/VFF7-C/VFF769Q.Seq.d/                         40   0.052
SLB640 (SLB640Q) /CSM/SL/SLB6-B/SLB640Q.Seq.d/                         40   0.052
SFH857 (SFH857Q) /CSM/SF/SFH8-C/SFH857Q.Seq.d/                         40   0.052
AFN319 (AFN319Q) /CSM/AF/AFN3-A/AFN319Q.Seq.d/                         40   0.052
AFE732 (AFE732Q) /CSM/AF/AFE7-B/AFE732Q.Seq.d/                         40   0.052
VSJ321 (VSJ321Q) /CSM/VS/VSJ3-A/VSJ321Q.Seq.d/                         38   0.21
VSH860 (VSH860Q) /CSM/VS/VSH8-C/VSH860Q.Seq.d/                         38   0.21
VSF320 (VSF320Q) /CSM/VS/VSF3-A/VSF320Q.Seq.d/                         38   0.21
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU034010) Dictyostelium discoideum slug cDNA, clone SLB802.     1144   0.0    2
(DT425950) JGI_CABJ6079.fwd NIH_XGC_tropSki1 Xenopus (Silura...    44   5e-04  2
(DR847630) JGI_CABE11535.fwd NIH_XGC_tropOva1 Xenopus (Silur...    44   5e-04  2
(DN071308) JGI_CABD6595.fwd NIH_XGC_tropLun1 Xenopus (Silura...    44   5e-04  2
(DR844971) JGI_CABE10144.fwd NIH_XGC_tropOva1 Xenopus (Silur...    44   5e-04  2
(DN010811) JGI_CAAQ9367.rev NIH_XGC_tropHrt1 Xenopus (Silura...    44   5e-04  2
(CX977539) JGI_CAAP10297.rev NIH_XGC_tropInt1 Xenopus (Silur...    44   5e-04  2
(EL364507) CCEM9020.b1_H23.ab1 CCE(LMS) endive Cichorium end...    42   5e-04  2
(DN097777) JGI_CABE7583.fwd NIH_XGC_tropOva1 Xenopus (Silura...    44   5e-04  2
(EL343227) CCEL11223.b1_M21.ab1 CCE(LMS) endive Cichorium en...    42   5e-04  2
dna update 2009. 2.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(O16299) RecName: Full=Fidgetin-like protein 1;          EC=3.6....   206   9e-52
BC162519_1(BC162519|pid:none) Danio rerio wu:fb82h05, mRNA (cDNA...   196   6e-49
BC067715_1(BC067715|pid:none) Danio rerio spastin, mRNA (cDNA cl...   184   3e-45
AC104617_27(AC104617|pid:none) Trypanosoma brucei chromosome 5 c...   183   5e-45
(Q8BPY9) RecName: Full=Fidgetin-like protein 1;          EC=3.6....   182   1e-44
AF263914_1(AF263914|pid:none) Mus musculus fidgetin-like 1 (Fign...   182   1e-44
AJ720192_1(AJ720192|pid:none) Gallus gallus mRNA for hypothetica...   182   1e-44
AL834387_1(AL834387|pid:none) Homo sapiens mRNA; cDNA DKFZp434K1...   181   2e-44
AK027537_1(AK027537|pid:none) Homo sapiens cDNA FLJ14631 fis, cl...   181   2e-44
(Q6GX84) RecName: Full=Fidgetin-like protein 1;          EC=3.6....   181   3e-44
protein update 2009. 6. 1
PSORT 

 psg: 0.43  gvh: 0.07  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.14  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: nuclear
	 28.0 %: cytoplasmic
	  4.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for SLB802 is nuc
5' end seq. ID SLB802F
5' end seq. 
>SLB802F.Seq
GAACAAATTAAACAACAAAAATTACAACAACAAAGAATTGAACAAGAACAAAGAGAGAAA
TTAGAACAAGAACAAAGAGAGTGGGAAAGAGAAAGAGAAAGAAAAGAACAATTAGAAAGA
GAAAAACAACAGCAACAACAACAACAACAACAAAGACAATCCTCAAATAATAATAATAAT
AATAATAATAATAATAAT----------
Length of 5' end seq. 198
3' end seq. ID SLB802Z
3' end seq. 
>SLB802Z.Seq
----------TTCTTGCCATCGGTAATTTTCATTGATGAAATCGATTCTTTACTTGCTGC
TAGAACAGAGAATGAAAATGAAGCATCGCGTCGTATTAAAACAGAGTTTTTAATTCAATG
GGATGGTGTTGCTGGTAATGCAGAGGATCAAATGCTGTTAATCGGCGCCACCAATAGACC
CGATGAATTGGATGAAGCAGCTCGTAGACGTATGACCAAACGTTTGTATATCCCCTTACC
AGATAATGAAAGTCGTTTGGCTTTAGTTAAAAACTTGTTAAAGAATGAAAATCATGAAAT
TTCACCCGACGATATGCAAAATATCGCTTCAATTTCCGATGGTTATTCTGGTGCCGATAT
GAAATCATTATCAACCGAAGCTGCCTATCAACCAATTCGTGACTTACGTGGTGAGATTGA
AAGTGTTGAAAAAGAATCAATTCGTCCAATTTGTTTAAATGATTTCTTATTAGCTGTTAA
AAGAGTAAAACCATCTGTAGCTAAAAAAGAATTGGATGCATATATTGATTGGAATGATAA
ATTTGGTGCATTAAGTTAAAAGAATAGAAAATCACATATATTTACACAAAAAAAACACAA
TCGCTAATAAAGTTTAAATCTAATTAA
Length of 3' end seq. 617
Connected seq. ID SLB802P
Connected seq. 
>SLB802P.Seq
GAACAAATTAAACAACAAAAATTACAACAACAAAGAATTGAACAAGAACAAAGAGAGAAA
TTAGAACAAGAACAAAGAGAGTGGGAAAGAGAAAGAGAAAGAAAAGAACAATTAGAAAGA
GAAAAACAACAGCAACAACAACAACAACAACAAAGACAATCCTCAAATAATAATAATAAT
AATAATAATAATAATAAT----------TTCTTGCCATCGGTAATTTTCATTGATGAAAT
CGATTCTTTACTTGCTGCTAGAACAGAGAATGAAAATGAAGCATCGCGTCGTATTAAAAC
AGAGTTTTTAATTCAATGGGATGGTGTTGCTGGTAATGCAGAGGATCAAATGCTGTTAAT
CGGCGCCACCAATAGACCCGATGAATTGGATGAAGCAGCTCGTAGACGTATGACCAAACG
TTTGTATATCCCCTTACCAGATAATGAAAGTCGTTTGGCTTTAGTTAAAAACTTGTTAAA
GAATGAAAATCATGAAATTTCACCCGACGATATGCAAAATATCGCTTCAATTTCCGATGG
TTATTCTGGTGCCGATATGAAATCATTATCAACCGAAGCTGCCTATCAACCAATTCGTGA
CTTACGTGGTGAGATTGAAAGTGTTGAAAAAGAATCAATTCGTCCAATTTGTTTAAATGA
TTTCTTATTAGCTGTTAAAAGAGTAAAACCATCTGTAGCTAAAAAAGAATTGGATGCATA
TATTGATTGGAATGATAAATTTGGTGCATTAAGTTAAAAGAATAGAAAATCACATATATT
TACACAAAAAAAACACAATCGCTAATAAAGTTTAAATCTAATTAA
Length of connected seq. 815
Full length Seq ID -
Full length Seq. -
Length of full length seq. -