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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLB733
Library SL
(Link to library)
Clone ID SLB733
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15444-1
Original site URL
Representative seq. ID SLB733E
(Link to Original site)
Representative DNA sequence 
>SLB733 (SLB733Q) /CSM/SL/SLB7-B/SLB733Q.Seq.d/
CCCACGCGTCCGCATGAGAAACGCTTCATGTGTTGCCCTCACTGGTGTCAACTCTGCTGA
CTCAAACGAACTCGCTTTATTAGTTGAATCCGCCAAACAAATGTTCAACAATAACAGTGA
ACACAGAAAGACCTGGGGTGGTAACACTTTATCTGGTCCAGCTCGTGCTATCTTAGCCAA
ACGTCAAAAAGCTGAAGCCAAAGAAAGTTTAGCCAAATCAAAGATCTAAGCTCTTTAATA
GTTTAGCGAGACTCTCACTCTTTTTTTAAATAATCAAATAAAATAAAGGTTCTTTAAAAA
AAAAAAATACTAAA
sequence update 1998. 4.14
Translated Amino Acid sequence 
PRVRMRNASCVALTGVNSADSNELALLVESAKQMFNNNSEHRKTWGGNTLSGPARAILAK
RQKAEAKESLAKSKI*al**fsetltlflnnqik*rffkkkky*
Translated Amino Acid sequence (All Frames) 
Frame A:
ptrphekrfmccphwcqlc*lkrtrfis*irqtnvqq*q*tqkdlgw*hfiwssscylsq
tsks*sqrkfsqikdlssliv*rdshsffk*snkikvl*kkkil


Frame B:
PRVRMRNASCVALTGVNSADSNELALLVESAKQMFNNNSEHRKTWGGNTLSGPARAILAK
RQKAEAKESLAKSKI*al**fsetltlflnnqik*rffkkkky*


Frame C:
hasa*etlhvlpslvstlltqtnsly*lnppnkcstitvnterpgvvtlylvqlvls*pn
vkklkpkkv*pnqrsklfnslarlslff*iik*nkgslkkkntk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLB733 (SLB733Q) /CSM/SL/SLB7-B/SLB733Q.Seq.d/                        543   e-154
VSC868 (VSC868Q) /CSM/VS/VSC8-C/VSC868Q.Seq.d/                        519   e-147
VSB774 (VSB774Q) /CSM/VS/VSB7-D/VSB774Q.Seq.d/                        519   e-147
SSI357 (SSI357Q) /CSM/SS/SSI3-C/SSI357Q.Seq.d/                        519   e-147
SLG494 (SLG494Q) /CSM/SL/SLG4-D/SLG494Q.Seq.d/                        519   e-147
SLG134 (SLG134Q) /CSM/SL/SLG1-B/SLG134Q.Seq.d/                        519   e-147
SLB788 (SLB788Q) /CSM/SL/SLB7-D/SLB788Q.Seq.d/                        519   e-147
FC-BF14 (FC-BF14Q) /CSM/FC/FC-BF/FC-BF14Q.Seq.d/                      519   e-147
FC-BB05 (FC-BB05Q) /CSM/FC/FC-BB/FC-BB05Q.Seq.d/                      519   e-147
FC-BB03 (FC-BB03Q) /CSM/FC/FC-BB/FC-BB03Q.Seq.d/                      519   e-147
own update 2001. 8.26
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU034092) Dictyostelium discoideum slug cDNA, clone SLB733.      585   e-163  1
(C23695) Dictyostelium discoideum gamete cDNA, clone FC-AK02.     561   e-156  2
(AC116100) Dictyostelium discoideum chromosome 2 map 6163571...   561   e-156  1
(AU284631) Dictyostelium discoideum gamete cDNA clone:FC-BF1...   561   e-156  1
(AU284520) Dictyostelium discoideum gamete cDNA clone:FC-BB0...   561   e-156  1
(AU284518) Dictyostelium discoideum gamete cDNA clone:FC-BB0...   561   e-156  1
(AU284449) Dictyostelium discoideum gamete cDNA clone:FC-AW0...   561   e-156  1
(AU284378) Dictyostelium discoideum gamete cDNA clone:FC-AQ1...   561   e-156  1
(AU284368) Dictyostelium discoideum gamete cDNA clone:FC-AP1...   561   e-156  1
(AU262849) Dictyostelium discoideum vegetative cDNA clone:VS...   561   e-156  1
dna update 2009. 2.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54ZD1) RecName: Full=60S ribosomal protein L7a;                     119   3e-26
BC122243_1(BC122243|pid:none) Danio rerio zgc:153325, mRNA (cDNA...    49   6e-05
CR940348_866(CR940348|pid:none) Theileria annulata strain Ankara...    48   1e-04
AB221488_1(AB221488|pid:none) Gallus gallus mRNA for ribosomal p...    45   6e-04
AY674243_1(AY674243|pid:none) Ixodes pacificus clone IP_7_60_92_...    45   0.001
(O76732) RecName: Full=60S ribosomal protein L7a;                      45   0.001
AY674250_1(AY674250|pid:none) Ixodes pacificus clone IP_clu307 r...    45   0.001
DQ440224_1(DQ440224|pid:none) Aedes aegypti clone AET-254 riboso...    44   0.001
AY925010_1(AY925010|pid:none) Physarum polycephalum Rpl7A gene, ...    44   0.002
DQ675543_1(DQ675543|pid:none) Diaphorina citri clone WHDc0302 ri...    44   0.002
protein update 2009. 7. 4
PSORT 

 psg: 0.90  gvh: 0.53  alm: 0.49  top: 0.13  tms: 0.00  mit: 0.43  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.80  pox: 0.30  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: mitochondrial
	 36.0 %: nuclear
	 16.0 %: cytoplasmic
	  8.0 %: extracellular, including cell wall
	  4.0 %: endoplasmic reticulum

>> prediction for SLB733 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLB733E
Full length Seq. 
>SLB733E.Seq
CCCACGCGTCCGCATGAGAAACGCTTCATGTGTTGCCCTCACTGGTGTCAACTCTGCTGA
CTCAAACGAACTCGCTTTATTAGTTGAATCCGCCAAACAAATGTTCAACAATAACAGTGA
ACACAGAAAGACCTGGGGTGGTAACACTTTATCTGGTCCAGCTCGTGCTATCTTAGCCAA
ACGTCAAAAAGCTGAAGCCAAAGAAAGTTTAGCCAAATCAAAGATCTAAGCTCTTTAATA
GTTTAGCGAGACTCTCACTCTTTTTTTAAATAATCAAATAAAATAAAGGTTCTTTAAAAA
AAAAAAATACTAAA
Length of full length seq. 314