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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLB720
Library SL
(Link to library)
Clone ID SLB720
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16455-1
Original site URL
Representative seq. ID SLB720E
(Link to Original site)
Representative DNA sequence 
>SLB720 (SLB720Q) /CSM/SL/SLB7-A/SLB720Q.Seq.d/
GTCGATAAAGTTGATCGTCGTACTGGTGCCGTCGTTGCCAAAGAAGGTACTGCCGCCGTC
GTCTTAAAGAATGGTGATGCTGCTATGGTCGAATTAACCCCATCTCGTCCAATGTGTGTT
GAATCATTCACTGAATACCCACCATTAGGTCGTTTCGCCGTCAGAGATATGAGACAAACC
GTTGCCGTCGGTGTCATCAAATCAACCGTCAAGAAAGCCCCAGGTAAAGCAGGTGATAAG
AAAGGTGCTGCTGCTCCATCAAAGAAGAAATAAATAATTTGAAAAAAAATTTTATAATTA
TTCTAAAAATAAAAAAAAAAAAAAA
sequence update 1998. 4.15
Translated Amino Acid sequence 
VDKVDRRTGAVVAKEGTAAVVLKNGDAAMVELTPSRPMCVESFTEYPPLGRFAVRDMRQT
VAVGVIKSTVKKAPGKAGDKKGAAAPSKKK*ii*kkil*lf*k*kkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
VDKVDRRTGAVVAKEGTAAVVLKNGDAAMVELTPSRPMCVESFTEYPPLGRFAVRDMRQT
VAVGVIKSTVKKAPGKAGDKKGAAAPSKKK*ii*kkil*lf*k*kkkk


Frame B:
siklivvlvpslpkkvlppss*rmvmllwsn*phlvqcvlnhslnthh*vvspsei*dkp
lpsvssnqpsrkpqvkqvirkvlllhqrrnk*fekkfynysknkkkkk


Frame C:
r*s*ssywcrrcqrrycrrrlkew*ccygrinpissnvc*iih*iptirsfrrqryetnr
crrchqinrqespr*sr**ercccsikeeinnlkknfiiilkikkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSH744 (VSH744Q) /CSM/VS/VSH7-B/VSH744Q.Seq.d/                        529   e-150
VSA495 (VSA495Q) /CSM/VS/VSA4-D/VSA495Q.Seq.d/                        529   e-150
VFN366 (VFN366Q) /CSM/VF/VFN3-C/VFN366Q.Seq.d/                        529   e-150
VFK539 (VFK539Q) /CSM/VF/VFK5-B/VFK539Q.Seq.d/                        529   e-150
VFI867 (VFI867Q) /CSM/VF/VFI8-C/VFI867Q.Seq.d/                        529   e-150
VFG736 (VFG736Q) /CSM/VF/VFG7-B/VFG736Q.Seq.d/                        529   e-150
VFG279 (VFG279Q) /CSM/VF/VFG2-D/VFG279Q.Seq.d/                        529   e-150
VFF334 (VFF334Q) /CSM/VF/VFF3-B/VFF334Q.Seq.d/                        529   e-150
VFE185 (VFE185Q) /CSM/VF/VFE1-D/VFE185Q.Seq.d/                        529   e-150
VFD312 (VFD312Q) /CSM/VF/VFD3-A/VFD312Q.Seq.d/                        529   e-150
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU284939) Dictyostelium discoideum gamete cDNA clone:FC-BQ1...   529   e-146  1
(AU284921) Dictyostelium discoideum gamete cDNA clone:FC-BP2...   529   e-146  1
(AU284887) Dictyostelium discoideum gamete cDNA clone:FC-BO1...   529   e-146  1
(AU284668) Dictyostelium discoideum gamete cDNA clone:FC-BG1...   529   e-146  1
(AU284515) Dictyostelium discoideum gamete cDNA clone:FC-BB0...   529   e-146  1
(AU284299) Dictyostelium discoideum gamete cDNA clone:FC-AJ0...   529   e-146  1
(AU284271) Dictyostelium discoideum gamete cDNA clone:FC-AG1...   529   e-146  1
(AU267906) Dictyostelium discoideum vegetative cDNA clone:VS...   529   e-146  1
(AU261521) Dictyostelium discoideum vegetative cDNA clone:VS...   529   e-146  1
(AU052281) Dictyostelium discoideum slug cDNA, clone SLA633.      529   e-146  1
dna update 2009. 2.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X55973_1(X55973|pid:none) D. discoideum EF1-I gene for elongatio...   138   5e-32
X55972_1(X55972|pid:none) D. discoideum EF1-II gene for elongati...   138   5e-32
(P18624) RecName: Full=Elongation factor 1-alpha;          Short...   138   5e-32
FJ539138_1(FJ539138|pid:none) Ignatius tetrasporus strain UTEX B...    96   3e-19
(Q00251) RecName: Full=Elongation factor 1-alpha;          Short...    96   5e-19
FN392319_1522(FN392319|pid:none) Pichia pastoris GS115 chromosom...    95   7e-19
AF054510_1(AF054510|pid:none) Yarrowia lipolytica translation el...    95   9e-19
AF398148_1(AF398148|pid:none) Brassica rapa subsp. pekinensis tr...    94   1e-18
AY445082_1(AY445082|pid:none) Metarhizium anisopliae strain E6 t...    94   1e-18
(P40911) RecName: Full=Elongation factor 1-alpha;          Short...    94   1e-18
protein update 2009. 7. 4
PSORT 

 psg: 0.69  gvh: 0.34  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 40.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for SLB720 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLB720E
Full length Seq. 
>SLB720E.Seq
GTCGATAAAGTTGATCGTCGTACTGGTGCCGTCGTTGCCAAAGAAGGTACTGCCGCCGTC
GTCTTAAAGAATGGTGATGCTGCTATGGTCGAATTAACCCCATCTCGTCCAATGTGTGTT
GAATCATTCACTGAATACCCACCATTAGGTCGTTTCGCCGTCAGAGATATGAGACAAACC
GTTGCCGTCGGTGTCATCAAATCAACCGTCAAGAAAGCCCCAGGTAAAGCAGGTGATAAG
AAAGGTGCTGCTGCTCCATCAAAGAAGAAATAAATAATTTGAAAAAAAATTTTATAATTA
TTCTAAAAATAAAAAAAAAAAAAAA
Length of full length seq. 325