AFK156
Library AF
(Link to library)
Clone ID AFK156
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFK156P
(Link to Original site)
Representative DNA sequence
>AFK156 (AFK156Q) /CSM/AF/AFK1-C/AFK156Q.Seq.d/
TATCATATTTATAATTATATCTTTTTTGTTTAATAAAAAAGAAAGAATACCAACATGAGA
CTTTTATTGTGTTTAATTTTCTTAGTTTTTGTTTTCAATTTTGCATTATCAACAGTTCAT
TTCAAAGATACCTTTGATAACGATTGGGAATCAAGATGGGTTGTTAGTGATTGGCATAAA
GAAGATGGTAAATCAGGTAAATTAGTTCATACTGCAGGTAAATGGTTTGGTGATGAAAAT
CAAAAAGGTATTCAAACTAGTGAAGATGCTCGTTTCTACGCTGTATCAGCTAAATTCCCA
AGTTTCAGTAACAAAGGTAAAGATTTAGTTCTCCAATACACTGTAAAGAATGAACAAAAA
GTTGATTGTGGTGGTTCATACATCAAGTTATTACCATCCAAATTAGATCAATCAGCATTC
GATGGTGAATCTGAATATTCCATTATGTTTGGTCCAGATGTTTGTGGTGCCTCAAAGAGA
GTTCACGTCATTCTCAACTACAAAGGAAAGAACCATTTAATCAAGAAAGAAATCAACAAA
GTTGAAACCGATCAATTAACTCATCAATACACTTTTGGTCATTTCACCAGATAACACCTX
XXXXXXXXXAATTCAAAGGGTGAATGGAAAGCAAAGAAAATNCCNAATCCAGNATTCNAA
GGTGAATGGGTACNCCCNTTTATTGATAACCCAGAATNCGCTGNAGACAATGAACTCTAC
CTCTTTAATGATNTCGGTGCTATCGGTTTCGAATTATGGCAAGTTAAATCTGGTTCCATC
TTTAACAATATGATCGTCNCCGACTCTGTCGAAGAAGCTAAAGATTTCTNTGAAAAGACC
TTTGTTGCCAACCAAGAAGCCGAAAAGAAAATGTTTGNCGNCCTCGAAGCCGCCAAAGCT
GAAGAGAGAAAGAAAGCTGACGAAAAATTAGCTGCCGAAAAAGCTGCTGAAAAAGAAGCC
GAAGAAGCTGATGAAGAAGAAGAAGAAGTCGCTGAAGAAGATTTAGTTAAAACTGATGNC
AAAAAAGAAGAAGTCAAAAAATCAACCNAAAAAGTTG
sequence update 2001. 6. 1
Translated Amino Acid sequence
syl*lylfclikkkeyqhetfivfnflsfcfqfciinssfqryl**rlgikmgc**la*r
rw*ir*issycr*mvw**kskrysn**rcsflrcis*ipkfq*qr*rfsspihcke*tks
*lwwfihqvitiqirsisirw*i*ifhyvwsrclwclkessrhsqlqrkepfnqernqqs
*NRSINSSIHFWSFHQITP---

---NSKGEWKAKKXPNPXFXGEWVXPFIDNPEXAXDNELYLFNDXGAIGFELWQVKSGSI
FNNMIVXDSVEEAKDFXEKTFVANQEAEKKMFXXLEAAKAEERKKADEKLAAEKAAEKEA
EEADEEEEEVAEEDLVKTDXKKEEVKKSTXKV


Translated Amino Acid sequence (All Frames)
Frame A:
yhiynyiffv**krkntnmrlllcliflvfvfnfalstvhfkdtfdndwesrwvvsdwhk
edgksgklvhtagkwfgdenqkgiqtsedarfyavsakfpsfsnkgkdlvlqytvkneqk
vdcggsyikllpskldqsafdgeseysimfgpdvcgaskrvhvilnykgknhlikkeink
vetdqlthqytfghftr*h---

---NSKGEWKAKKXPNPXFXGEWVXPFIDNPEXAXDNELYLFNDXGAIGFELWQVKSGSI
FNNMIVXDSVEEAKDFXEKTFVANQEAEKKMFXXLEAAKAEERKKADEKLAAEKAAEKEA
EEADEEEEEVAEEDLVKTDXKKEEVKKSTXKV

Frame B:
iifiiisflfnkkeript*dfycv*fs*flfsilhyqqfiskiplitignqdgllvigik
kmvnqvn*filqvnglvmkikkvfklvkmlvstlyqlnsqvsvtkvki*fsntl*rmnkk
livvvhtssyyhpn*inqhsmvnlniplclvqmfvvpqreftsfsttkerti*srkkstk
lkpin*lintllvispdnt---

---iqrvngkqrkxxiqxskvngyxxllitqnxlxtmnstslmxsvlsvsnygklnlvps
lti*ssptlskklkisxkrpllptkkpkrkclxxskppklkrerkltkn*lpkkllkkkp
kklmkkkkkslkki*lklmxkkkksknqpkkl

Frame C:
syl*lylfclikkkeyqhetfivfnflsfcfqfciinssfqryl**rlgikmgc**la*r
rw*ir*issycr*mvw**kskrysn**rcsflrcis*ipkfq*qr*rfsspihcke*tks
*lwwfihqvitiqirsisirw*i*ifhyvwsrclwclkessrhsqlqrkepfnqernqqs
*NRSINSSIHFWSFHQITP---

---fkg*meskenxxsxixr*mgtpxy**prxrxrq*tlpl**xrcyrfrimas*iwfhl
*qydrxrlcrrs*rfl*kdlccqprsrkenvxrprsrqs*rekes*rkiscrksc*krsr
rs**rrrrsr*rrfs*n*xqkrrsqkinxks

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFK156 (AFK156Q) /CSM/AF/AFK1-C/AFK156Q.Seq.d/ 1639 0.0
AFL648 (AFL648Q) /CSM/AF/AFL6-B/AFL648Q.Seq.d/ 1179 0.0
AFG656 (AFG656Q) /CSM/AF/AFG6-C/AFG656Q.Seq.d/ 1179 0.0
VFE283 (VFE283Q) /CSM/VF/VFE2-D/VFE283Q.Seq.d/ 1178 0.0
AFM286 (AFM286Q) /CSM/AF/AFM2-D/AFM286Q.Seq.d/ 1178 0.0
VFM435 (VFM435Q) /CSM/VF/VFM4-B/VFM435Q.Seq.d/ 1170 0.0
VFL360 (VFL360Q) /CSM/VF/VFL3-C/VFL360Q.Seq.d/ 1170 0.0
VFL214 (VFL214Q) /CSM/VF/VFL2-A/VFL214Q.Seq.d/ 1170 0.0
VFH220 (VFH220Q) /CSM/VF/VFH2-A/VFH220Q.Seq.d/ 1170 0.0
VFH144 (VFH144Q) /CSM/VF/VFH1-B/VFH144Q.Seq.d/ 1170 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U36937|U36937.1 Dictyostelium discoideum calreticulin mRNA, complete cds. 1122 0.0 4
BD248385|BD248385.1 Gene participating in tolerance against environmental stress. 92 7e-24 3
AY342298|AY342298.1 Ictalurus punctatus ER-resident chaperone calreticulin mRNA, complete cds. 56 2e-05 2
BZ392863|BZ392863.1 EINBW38TF EI_10_12_KB Entamoeba invadens genomic clone EINBW38, DNA sequence. 52 4e-05 2
BI876472|BI876472.1 fl72h01.y1 Sugano Kawakami zebrafish DRA Danio rerio cDNA clone 3819504 5' similar to TR:Q9PUC1 Q9PUC1 CALRETICULIN. ;, mRNA sequence. 42 4e-04 2
CB086220|CB086220.1 hj81f04.g1 Hedyotis centranthoides flower - Stage 2 (NYBG) Hedyotis centranthoides cDNA clone hj81f04, mRNA sequence. 36 7e-04 3
BI468042|BI468042.1 EST00452 Atlantic salmon Lambda Zap Express liver cDNA library Salmo salar cDNA clone LRR7-f02 5' similar to Calreticulin, mRNA sequence. 56 0.001 1
CB937139|CB937139.1 IpCGJx13_12_E07_23 IpCGJx13 Ictalurus punctatus cDNA clone IpCGJx13_12_E07 5', mRNA sequence. 56 0.001 1
BQ261502|BQ261502.1 fz71d12.y1 Sugano SJD adult male Danio rerio cDNA clone 5914030 5' similar to TR:Q9PUC1 Q9PUC1 CALRETICULIN. ;, mRNA sequence. 40 0.002 2
BM957414|BM957414.1 fy77g03.y1 Sugano SJD adult male Danio rerio cDNA clone 5777093 5' similar to TR:Q9PUC1 Q9PUC1 CALRETICULIN. ;, mRNA sequence. 40 0.002 2
dna update 2003. 9. 7
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

U36937_1(U36937|pid:none) Dictyostelium discoideum calreticulin ... 329 8e-89
BT072764_1(BT072764|pid:none) Salmo salar clone ssal-rgf-539-230... 214 4e-54
U27698_1(U27698|pid:none) Arabidopsis thaliana calreticulin (AtC... 209 2e-52
(Q40401) RecName: Full=Calreticulin; Flags: Precursor; &T16968(... 209 2e-52
AC133339_28(AC133339|pid:none) Oryza sativa chromosome 3 BAC OSJ... 207 5e-52
AB196794_1(AB196794|pid:none) Glycine max Gm crt-1 mRNA for calr... 207 6e-52
EF085019_1(EF085019|pid:none) Picea sitchensis clone WS0297_I16 ... 206 8e-52
EU984501_1(EU984501|pid:none) Nicotiana tabacum calreticulin mRN... 206 8e-52
AY086745_1(AY086745|pid:none) Arabidopsis thaliana clone 27210 m... 206 1e-51
AC003114_8(AC003114|pid:none) Arabidopsis thaliana chromosome 1 ... 206 1e-51
protein update 2009. 4.24
PSORT

psg: 0.87 gvh: 0.43 alm: 0.51 top: 0.47 tms: 0.00 mit: 0.42 mip: 0.02
nuc: 0.06 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: mitochondrial
28.0 %: cytoplasmic
24.0 %: nuclear
8.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for AFK156 is mit

5' end seq. ID AFK156F
5' end seq.
>AFK156F.Seq
TATCATATTTATAATTATATCTTTTTTGTTTAATAAAAAAGAAAGAATACCAACATGAGA
CTTTTATTGTGTTTAATTTTCTTAGTTTTTGTTTTCAATTTTGCATTATCAACAGTTCAT
TTCAAAGATACCTTTGATAACGATTGGGAATCAAGATGGGTTGTTAGTGATTGGCATAAA
GAAGATGGTAAATCAGGTAAATTAGTTCATACTGCAGGTAAATGGTTTGGTGATGAAAAT
CAAAAAGGTATTCAAACTAGTGAAGATGCTCGTTTCTACGCTGTATCAGCTAAATTCCCA
AGTTTCAGTAACAAAGGTAAAGATTTAGTTCTCCAATACACTGTAAAGAATGAACAAAAA
GTTGATTGTGGTGGTTCATACATCAAGTTATTACCATCCAAATTAGATCAATCAGCATTC
GATGGTGAATCTGAATATTCCATTATGTTTGGTCCAGATGTTTGTGGTGCCTCAAAGAGA
GTTCACGTCATTCTCAACTACAAAGGAAAGAACCATTTAATCAAGAAAGAAATCAACAAA
GTTGAAACCGATCAATTAACTCATCAATACACTTTTGGTCATTTCACCAGATAACACCT-
---------
Length of 5' end seq. 599
3' end seq. ID AFK156Z
3' end seq.
>AFK156Z.Seq
----------AATTCAAAGGGTGAATGGAAAGCAAAGAAAATNCCNAATCCAGNATTCNA
AGGTGAATGGGTACNCCCNTTTATTGATAACCCAGAATNCGCTGNAGACAATGAACTCTA
CCTCTTTAATGATNTCGGTGCTATCGGTTTCGAATTATGGCAAGTTAAATCTGGTTCCAT
CTTTAACAATATGATCGTCNCCGACTCTGTCGAAGAAGCTAAAGATTTCTNTGAAAAGAC
CTTTGTTGCCAACCAAGAAGCCGAAAAGAAAATGTTTGNCGNCCTCGAAGCCGCCAAAGC
TGAAGAGAGAAAGAAAGCTGACGAAAAATTAGCTGCCGAAAAAGCTGCTGAAAAAGAAGC
CGAAGAAGCTGATGAAGAAGAAGAAGAAGTCGCTGAAGAAGATTTAGTTAAAACTGATGN
CAAAAAAGAAGAAGTCAAAAAATCAACCNAAAAAGTTG
Length of 3' end seq. 448
Connected seq. ID AFK156P
Connected seq.
>AFK156P.Seq
TATCATATTTATAATTATATCTTTTTTGTTTAATAAAAAAGAAAGAATACCAACATGAGA
CTTTTATTGTGTTTAATTTTCTTAGTTTTTGTTTTCAATTTTGCATTATCAACAGTTCAT
TTCAAAGATACCTTTGATAACGATTGGGAATCAAGATGGGTTGTTAGTGATTGGCATAAA
GAAGATGGTAAATCAGGTAAATTAGTTCATACTGCAGGTAAATGGTTTGGTGATGAAAAT
CAAAAAGGTATTCAAACTAGTGAAGATGCTCGTTTCTACGCTGTATCAGCTAAATTCCCA
AGTTTCAGTAACAAAGGTAAAGATTTAGTTCTCCAATACACTGTAAAGAATGAACAAAAA
GTTGATTGTGGTGGTTCATACATCAAGTTATTACCATCCAAATTAGATCAATCAGCATTC
GATGGTGAATCTGAATATTCCATTATGTTTGGTCCAGATGTTTGTGGTGCCTCAAAGAGA
GTTCACGTCATTCTCAACTACAAAGGAAAGAACCATTTAATCAAGAAAGAAATCAACAAA
GTTGAAACCGATCAATTAACTCATCAATACACTTTTGGTCATTTCACCAGATAACACCT-
---------AATTCAAAGGGTGAATGGAAAGCAAAGAAAATNCCNAATCCAGNATTCNAA
GGTGAATGGGTACNCCCNTTTATTGATAACCCAGAATNCGCTGNAGACAATGAACTCTAC
CTCTTTAATGATNTCGGTGCTATCGGTTTCGAATTATGGCAAGTTAAATCTGGTTCCATC
TTTAACAATATGATCGTCNCCGACTCTGTCGAAGAAGCTAAAGATTTCTNTGAAAAGACC
TTTGTTGCCAACCAAGAAGCCGAAAAGAAAATGTTTGNCGNCCTCGAAGCCGCCAAAGCT
GAAGAGAGAAAGAAAGCTGACGAAAAATTAGCTGCCGAAAAAGCTGCTGAAAAAGAAGCC
GAAGAAGCTGATGAAGAAGAAGAAGAAGTCGCTGAAGAAGATTTAGTTAAAACTGATGNC
AAAAAAGAAGAAGTCAAAAAATCAACCNAAAAAGTTG
Length of connected seq. 1047
Full length Seq ID -
Full length Seq. -
Length of full length seq. -