SLB686
Library SL
(Link to library)
Clone ID SLB686
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16455-1
Original site URL
Representative seq. ID SLB686Z
(Link to Original site)
Representative DNA sequence
>SLB686 (SLB686Q) /CSM/SL/SLB6-D/SLB686Q.Seq.d/
XXXXXXXXXXTGGTTACTCACCAGTCTTAGATTGTCACACTGCTCACATTGCCTGTAACT
TCACTGAAATCGTCGATAAAGTTGATCGTCGTACTGGTGCCGTCGTTGCCAAAGAAGGTA
CTGCCGCCGTCGTCTTAAAGAATGGTGATGCCGCTATGGTCGAATTAACCCCATCTCGTC
CAATGTGTGTTGAATCCTTCAGTGAATACCCACCATTAGGTCGTTTCGCCGTCAGAGATA
TGAGACAAACCGTCGCCGTCGGTGTCATCAAATCAACCGTCAAGAAAGCCCCAGGTAAAG
CCGGTGATAAGAAAGGTGCTGCTGCCCCATCAAAAAAGAAATAAATAAATAATATTTCTT
AATAAATAGCATTTTATAATAAAAAAAAAAA
sequence update 1998. 4.18
Translated Amino Acid sequence
---GYSPVLDCHTAHIACNFTEIVDKVDRRTGAVVAKEGTAAVVLKNGDAAMVELTPSRP
MCVESFSEYPPLGRFAVRDMRQTVAVGVIKSTVKKAPGKAGDKKGAAAPSKKK*innis*
*iafynkkk


Translated Amino Acid sequence (All Frames)
Frame A:
---GYSPVLDCHTAHIACNFTEIVDKVDRRTGAVVAKEGTAAVVLKNGDAAMVELTPSRP
MCVESFSEYPPLGRFAVRDMRQTVAVGVIKSTVKKAPGKAGDKKGAAAPSKKK*innis*
*iafynkkk


Frame B:
---vthqs*ivtlltlpvtslkssiklivvlvpslpkkvlppss*rmvmplwsn*phlvq
cvlnpsvnthh*vvspsei*dkpspsvssnqpsrkpqvkpvirkvllphqkrnk*iifln
k*hfiikkk


Frame C:
---lltslrlshcshcl*lh*nrr*s*ssywcrrcqrrycrrrlkew*crygrinpissn
vc*ilq*iptirsfrrqryetnrrrrchqinrqespr*sr**ercccpikkeink*yfli
nsil**kkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLB686 (SLB686Q) /CSM/SL/SLB6-D/SLB686Q.Seq.d/ 636 0.0
VSI414 (VSI414Q) /CSM/VS/VSI4-A/VSI414Q.Seq.d/ 620 e-177
VSE380 (VSE380Q) /CSM/VS/VSE3-D/VSE380Q.Seq.d/ 620 e-177
VSD740 (VSD740Q) /CSM/VS/VSD7-B/VSD740Q.Seq.d/ 620 e-177
VSD380 (VSD380Q) /CSM/VS/VSD3-D/VSD380Q.Seq.d/ 620 e-177
VSD312 (VSD312Q) /CSM/VS/VSD3-A/VSD312Q.Seq.d/ 620 e-177
VFO616 (VFO616Q) /CSM/VF/VFO6-A/VFO616Q.Seq.d/ 620 e-177
VFO348 (VFO348Q) /CSM/VF/VFO3-B/VFO348Q.Seq.d/ 620 e-177
VFN666 (VFN666Q) /CSM/VF/VFN6-C/VFN666Q.Seq.d/ 620 e-177
VFN474 (VFN474Q) /CSM/VF/VFN4-D/VFN474Q.Seq.d/ 620 e-177

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU033979) Dictyostelium discoideum slug cDNA, clone SLB686. 636 e-178 1
(X55973) D. discoideum EF1-I gene for elongation factor 1 al... 620 e-174 1
(AU285051) Dictyostelium discoideum gamete cDNA clone:FCL-AC... 620 e-174 1
(AU285021) Dictyostelium discoideum gamete cDNA clone:FCL-AA... 620 e-174 1
(AU285015) Dictyostelium discoideum gamete cDNA clone:FCL-AA... 620 e-174 1
(AU284628) Dictyostelium discoideum gamete cDNA clone:FC-BF1... 620 e-174 1
(AU284420) Dictyostelium discoideum gamete cDNA clone:FC-AT2... 620 e-174 1
(AU284342) Dictyostelium discoideum gamete cDNA clone:FC-AN0... 620 e-174 1
(AU284225) Dictyostelium discoideum gamete cDNA clone:FC-AA2... 620 e-174 1
(AU268657) Dictyostelium discoideum vegetative cDNA clone:VS... 620 e-174 1
dna update 2009. 2.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

X55973_1(X55973|pid:none) D. discoideum EF1-I gene for elongatio... 179 3e-44
X55972_1(X55972|pid:none) D. discoideum EF1-II gene for elongati... 179 3e-44
(P18624) RecName: Full=Elongation factor 1-alpha; Short... 179 3e-44
(Q00251) RecName: Full=Elongation factor 1-alpha; Short... 132 4e-30
AJ970312_1(AJ970312|pid:none) Hebeloma cylindrosporum mRNA for e... 132 5e-30
FJ695618_1(FJ695618|pid:none) Piriformospora indica translation ... 131 6e-30
AY849694_1(AY849694|pid:none) Magnaporthe grisea elongation fact... 131 8e-30
FJ539138_1(FJ539138|pid:none) Ignatius tetrasporus strain UTEX B... 131 8e-30
AY445082_1(AY445082|pid:none) Metarhizium anisopliae strain E6 t... 130 1e-29
(P40911) RecName: Full=Elongation factor 1-alpha; Short... 130 1e-29
protein update 2009. 6. 1
PSORT

psg: 0.75 gvh: 0.34 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
36.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: peroxisomal

>> prediction for SLB686 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLB686Z
3' end seq.
>SLB686Z.Seq
----------TGGTTACTCACCAGTCTTAGATTGTCACACTGCTCACATTGCCTGTAACT
TCACTGAAATCGTCGATAAAGTTGATCGTCGTACTGGTGCCGTCGTTGCCAAAGAAGGTA
CTGCCGCCGTCGTCTTAAAGAATGGTGATGCCGCTATGGTCGAATTAACCCCATCTCGTC
CAATGTGTGTTGAATCCTTCAGTGAATACCCACCATTAGGTCGTTTCGCCGTCAGAGATA
TGAGACAAACCGTCGCCGTCGGTGTCATCAAATCAACCGTCAAGAAAGCCCCAGGTAAAG
CCGGTGATAAGAAAGGTGCTGCTGCCCCATCAAAAAAGAAATAAATAAATAATATTTCTT
AATAAATAGCATTTTATAATAAAAAAAAAAA
Length of 3' end seq. 381
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -