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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLB659
Library SL
(Link to library)
Clone ID SLB659
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16382-1
Original site URL
Representative seq. ID SLB659Z
(Link to Original site)
Representative DNA sequence 
>SLB659 (SLB659Q) /CSM/SL/SLB6-C/SLB659Q.Seq.d/
XXXXXXXXXXCCACATACAACTCCATCATGAAATGTGATGTTGATAACCGTAAAGATTTA
TACGGTAATGTCGTCTTATCAGGTGGTACAACTATGTTCCCAGGTATTGCTGATCGTATG
AACAAAGAATTAACTGCTTTAGCACCATCAACCATGAAAATTAAAATCATTGCTCCACCA
GAACGTAAATACTCTGTCTGGATTGGTGGATCTATTTTAGCTTCACTCTCAACTTTCCAA
CAAATGTGGATCTCAAAAGAAGAATATGATGAATCTGGTCCATCAATTGTCCACAGAAAA
TGTTTCTAAATCATGATGAAAGTGCTTCATATAAAAATAATAATAATAATATAACAATAA
TAATATTTAAATGTATAATAAAATTTAATTACTTTTTTTTTAATGGTTGTTGATCTTTAT
CCGACCTTAAAAAAAAAAAAATAAAACC
sequence update 1998. 4.18
Translated Amino Acid sequence 
---TYNSIMKCDVDNRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPE
RKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF*immkvlhikiiiii*q**
ylnv**nlitfflmvvdlyptlkkkk*n
Translated Amino Acid sequence (All Frames) 
Frame A:
---hiqlhhem*c**p*rfir*crlirwynyvpryc*syeqrincfstinhen*nhcstr
t*ilcldwwiyfsftlnfptnvdlkrri**iwsincpqkmflnhdesasyknnnnnitii
ifkciikfnyfffngc*slsdlkkkkik


Frame B:
---TYNSIMKCDVDNRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPE
RKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF*immkvlhikiiiii*q**
ylnv**nlitfflmvvdlyptlkkkk*n


Frame C:
---https*nvmlitvkiytvmssyqvvqlcsqvlliv*tkn*ll*hhqp*klksllhqn
vntlsglvdlf*lhsqlsnkcgsqkknmmnlvhqlstenvsks**kcfi*k****ynnnn
i*mynki*llff*wllifirp*kkknkt
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLB659 (SLB659Q) /CSM/SL/SLB6-C/SLB659Q.Seq.d/                        630   e-180
SSM288 (SSM288Q) /CSM/SS/SSM2-D/SSM288Q.Seq.d/                        622   e-177
SSK713 (SSK713Q) /CSM/SS/SSK7-A/SSK713Q.Seq.d/                        622   e-177
SLI574 (SLI574Q) /CSM/SL/SLI5-D/SLI574Q.Seq.d/                        622   e-177
SLI436 (SLI436Q) /CSM/SL/SLI4-B/SLI436Q.Seq.d/                        622   e-177
SLH881 (SLH881Q) /CSM/SL/SLH8-D/SLH881Q.Seq.d/                        622   e-177
SLH863 (SLH863Q) /CSM/SL/SLH8-C/SLH863Q.Seq.d/                        622   e-177
SLH825 (SLH825Q) /CSM/SL/SLH8-B/SLH825Q.Seq.d/                        622   e-177
SLH701 (SLH701Q) /CSM/SL/SLH7-A/SLH701Q.Seq.d/                        622   e-177
SLH433 (SLH433Q) /CSM/SL/SLH4-B/SLH433Q.Seq.d/                        622   e-177
own update 2001. 8.26
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU033958) Dictyostelium discoideum slug cDNA, clone SLB659.      630   0.0    2
(AU052473) Dictyostelium discoideum slug cDNA, clone SLD384.      622   0.0    2
(AU039209) Dictyostelium discoideum slug cDNA, clone SLH151.      622   0.0    2
(AU053348) Dictyostelium discoideum slug cDNA, clone SLI436.      622   0.0    2
(AU034246) Dictyostelium discoideum slug cDNA, clone SLC319.      622   0.0    2
(AU052949) Dictyostelium discoideum slug cDNA, clone SLF368.      622   0.0    2
(AU039715) Dictyostelium discoideum slug cDNA, clone SLG249.      622   0.0    2
(AU052416) Dictyostelium discoideum slug cDNA, clone SLD280.      622   0.0    2
(AU052488) Dictyostelium discoideum slug cDNA, clone SLD411.      622   0.0    2
(AU039393) Dictyostelium discoideum slug cDNA, clone SLH701.      622   0.0    2
dna update 2009. 2.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54H30) RecName: Full=Major actin; AltName: Full=Actin-1; AltNa...   199   2e-50
ATDO(A93223;A92871;S67999;A03004)actin - slime mold (Dictyosteli...   199   2e-50
X03282_1(X03282|pid:none) dictyostelium discoideum gene for acti...   199   2e-50
B23412(B23412)actin 12 - slime mold (Dictyostelium discoideum)        199   2e-50
(P02576) RecName: Full=Actin, plasmodial isoform;  &ATFY(A29044;...   197   1e-49
(P02578) RecName: Full=Actin-1;  &ATAX(A92886;A03004) &V00002_1(...   197   1e-49
(Q553U6) RecName: Full=Putative actin-22;  &AC116305_3(AC116305|...   196   2e-49
AF508263_1(AF508263|pid:none) Pyrocystis lunula actin mRNA, comp...   194   8e-49
AY615868_1(AY615868|pid:none) Amastigomonas marina actin gene, p...   194   8e-49
(Q554S6) RecName: Full=Actin-17; AltName: Full=Actin-2-sub 2;  &...   194   8e-49
protein update 2009. 6. 1
PSORT 

 psg: 0.75  gvh: 0.47  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.09
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: peroxisomal
	  4.0 %: mitochondrial

>> prediction for SLB659 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLB659Z
3' end seq. 
>SLB659Z.Seq
----------CCACATACAACTCCATCATGAAATGTGATGTTGATAACCGTAAAGATTTA
TACGGTAATGTCGTCTTATCAGGTGGTACAACTATGTTCCCAGGTATTGCTGATCGTATG
AACAAAGAATTAACTGCTTTAGCACCATCAACCATGAAAATTAAAATCATTGCTCCACCA
GAACGTAAATACTCTGTCTGGATTGGTGGATCTATTTTAGCTTCACTCTCAACTTTCCAA
CAAATGTGGATCTCAAAAGAAGAATATGATGAATCTGGTCCATCAATTGTCCACAGAAAA
TGTTTCTAAATCATGATGAAAGTGCTTCATATAAAAATAATAATAATAATATAACAATAA
TAATATTTAAATGTATAATAAAATTTAATTACTTTTTTTTTAATGGTTGTTGATCTTTAT
CCGACCTTAAAAAAAAAAAAATAAAACC
Length of 3' end seq. 438
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -