SLB652
Library SL
(Link to library)
Clone ID SLB652
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16255-1
Original site URL
Representative seq. ID SLB652Z
(Link to Original site)
Representative DNA sequence
>SLB652 (SLB652Q) /CSM/SL/SLB6-C/SLB652Q.Seq.d/
XXXXXXXXXXCAATTGCCTCATTAGTCACTGGTACCACAAGTTGTGGTGGTGGCATGGGT
TCATTTGGTGGTCGATCCGATGAAGAATCAAGTGATCCAAATGCTATACTTGGTCTCTTT
GAAGACGATATTTTCTGGGGTGATAATGATGAATACTTTAGTGATAACTACCGTTATGTT
GATGAAGAAGATATTGATGAAGATTTCAATGGTAATGATGAATTTGAAATTGATGTTGAA
GGTGATTTCCAAGAAGATGATTTCGAAGAAGAATATGCATTTTATTAAATTAAACTTTTT
TTCATAAAAAAATAATAATAATAATTTAATAACTAATCATTATCATCAATAATAACATTA
TAATATTACTTTAATAACAATACTTTTTTTTAATATTCAAAGACTTTACAAAAAAAAAAA
sequence update 1998. 4.18
Translated Amino Acid sequence
---lph*SLVPQVVVVAWVHLVVDPMKNQVIQMLYLVSLKTIFSGVIMMNTLVITTVMLM
KKILMKISMVMMNLKLMLKVISKKMISKKNMHFIKLNFFS*knnnnnlitnhyhq**hyn
itlitilffniqrlykkk


Translated Amino Acid sequence (All Frames)
Frame A:
---nclishwyhklwwwhgfiwwsir*rik*skcytwsl*rryflg****il***lplc*
*rry**rfqw***i*n*c*r*fprr*frrricilln*tffhkkiiiii**liiiinnnii
ill**qyfflifkdftkkk


Frame B:
---iaslvtgttscgggmgsfggrsdeessdpnailglfeddifwgdndeyfsdnyryvd
eedidedfngndefeidvegdfqeddfeeeyafy*iklffikk****fnn*slssiitl*
yyfnnntff*ysktlqkkk


Frame C:
---lph*SLVPQVVVVAWVHLVVDPMKNQVIQMLYLVSLKTIFSGVIMMNTLVITTVMLM
KKILMKISMVMMNLKLMLKVISKKMISKKNMHFIKLNFFS*knnnnnlitnhyhq**hyn
itlitilffniqrlykkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLB652 (SLB652Q) /CSM/SL/SLB6-C/SLB652Q.Seq.d/ 565 e-160
SSM572 (SSM572Q) /CSM/SS/SSM5-C/SSM572Q.Seq.d/ 549 e-155
SSM396 (SSM396Q) /CSM/SS/SSM3-D/SSM396Q.Seq.d/ 549 e-155
SSL605 (SSL605Q) /CSM/SS/SSL6-A/SSL605Q.Seq.d/ 549 e-155
SSK815 (SSK815Q) /CSM/SS/SSK8-A/SSK815Q.Seq.d/ 549 e-155
SSJ101 (SSJ101Q) /CSM/SS/SSJ1-A/SSJ101Q.Seq.d/ 549 e-155
SSH577 (SSH577Q) /CSM/SS/SSH5-D/SSH577Q.Seq.d/ 549 e-155
SSH465 (SSH465Q) /CSM/SS/SSH4-C/SSH465Q.Seq.d/ 549 e-155
SSH455 (SSH455Q) /CSM/SS/SSH4-C/SSH455Q.Seq.d/ 549 e-155
SSG296 (SSG296Q) /CSM/SS/SSG2-D/SSG296Q.Seq.d/ 549 e-155

own update 2001. 8.26
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU033953) Dictyostelium discoideum slug cDNA, clone SLB652. 531 e-150 2
(AU054012) Dictyostelium discoideum slug cDNA, clone SLK416. 515 e-145 2
(AU038238) Dictyostelium discoideum slug cDNA, clone SSH455. 515 e-145 2
(AU053479) Dictyostelium discoideum slug cDNA, clone SLI735. 515 e-145 2
(AU053335) Dictyostelium discoideum slug cDNA, clone SLI413. 515 e-145 2
(AU054088) Dictyostelium discoideum slug cDNA, clone SLK575. 515 e-145 2
(AU052377) Dictyostelium discoideum slug cDNA, clone SLD220. 515 e-145 2
(AU052942) Dictyostelium discoideum slug cDNA, clone SLF356. 515 e-145 2
(AU052909) Dictyostelium discoideum slug cDNA, clone SLF306. 515 e-145 2
(AU038245) Dictyostelium discoideum slug cDNA, clone SSH465. 515 e-145 2
dna update 2009. 2.10
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr... 114 8e-25
(Q1AGV7) RecName: Full=Syndecan 4-A; AltName: Full=Syndecan-4.1;... 36 0.35
BC131894_1(BC131894|pid:none) Xenopus laevis syndecan-4.1, mRNA ... 36 0.35
A96599(A96599) protein F20N2.10 [imported] - Arabidopsis thalian... 35 1.0
CP001357_1645(CP001357|pid:none) Brachyspira hyodysenteriae WA1,... 34 1.7
CP000492_1690(CP000492|pid:none) Chlorobium phaeobacteroides DSM... 33 2.9
EF568108_144(EF568108|pid:none) Glossina pallidipes salivary gla... 33 2.9
AE001362_82(AE001362|pid:none) Plasmodium falciparum 3D7 chromos... 33 2.9
AY579380_1(AY579380|pid:none) Pristionchus pacificus transformer... 33 3.8
CP000107_18(CP000107|pid:none) Ehrlichia canis str. Jake, comple... 32 5.0
protein update 2009. 6. 1
PSORT

psg: 0.90 gvh: 0.49 alm: 0.31 top: 0.67 tms: 0.07 mit: 0.28 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

48.0 %: nuclear
28.0 %: cytoplasmic
8.0 %: Golgi
8.0 %: mitochondrial
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for SLB652 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLB652Z
3' end seq.
>SLB652Z.Seq
----------CAATTGCCTCATTAGTCACTGGTACCACAAGTTGTGGTGGTGGCATGGGT
TCATTTGGTGGTCGATCCGATGAAGAATCAAGTGATCCAAATGCTATACTTGGTCTCTTT
GAAGACGATATTTTCTGGGGTGATAATGATGAATACTTTAGTGATAACTACCGTTATGTT
GATGAAGAAGATATTGATGAAGATTTCAATGGTAATGATGAATTTGAAATTGATGTTGAA
GGTGATTTCCAAGAAGATGATTTCGAAGAAGAATATGCATTTTATTAAATTAAACTTTTT
TTCATAAAAAAATAATAATAATAATTTAATAACTAATCATTATCATCAATAATAACATTA
TAATATTACTTTAATAACAATACTTTTTTTTAATATTCAAAGACTTTACAAAAAAAAAAA
Length of 3' end seq. 410
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -