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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLB615
Library SL
(Link to library)
Clone ID SLB615
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16255-1
Original site URL
Representative seq. ID SLB615Z
(Link to Original site)
Representative DNA sequence 
>SLB615 (SLB615Q) /CSM/SL/SLB6-A/SLB615Q.Seq.d/
XXXXXXXXXXCGTCACTCAACTGCCTCAACAATTGCCTCATTAGTCACTGGTACCACAAG
TGGTGGTGGTGGTATGGGTTCATTTGGTGGTCGATCCGATGAAGAATCAAGTGATCCAAA
TGCTATACTTGGTCTCTTTGAAGACGATATTTTCTGGGGTGATAATGATGAATACTTTAG
TGATAAGTACCGTTATGTTGATGAAGAAGATATTGATGAAGATTNNNNTGGTAATGATGA
ATTTGAAATTGATGTTGAAGGTGATTTCCAAGAAGATGATTTCGAAGAAGAATATGCATT
TTATTAAATTAAACTTTTTTTCATAAAAAAATAATAATAATAATTTGATAACTAATGATT
ATCATCAATAATAACATTATAATATTACTTTAATAACAATACTTTTTTTTAATATTCAAA
GACTTTACAAA
sequence update 1998. 4.10
Translated Amino Acid sequence 
---HSTASTIASLVTGTTSGGGGMGSFGGRSDEESSDPNAILGLFEDDIFWGDNDEYFSD
KYRYVDEEDIDEDXXGNDEFEIDVEGDFQEDDFEEEYAFY*iklffikk****fdn**ls
siitl*yyfnnntff*ysktlq
Translated Amino Acid sequence (All Frames) 
Frame A:
---vtqlpqqlph*slvpqvvvvvwvhlvvdpmknqviqmlylvslktifsgvimmntlv
istvmlmkkilmkixxvmmnlklmlkviskkmiskknmhfiklnffs*knnnnnlitndy
hq**hynitlitilffniqrlyk


Frame B:
---slnclnnclishwyhkwwwwygfiwwsir*rik*skcytwsl*rryflg****il**
*vplc**rry**rxxw***i*n*c*r*fprr*frrricilln*tffhkkiiiii**lmii
innniiill**qyfflifkdft


Frame C:
---HSTASTIASLVTGTTSGGGGMGSFGGRSDEESSDPNAILGLFEDDIFWGDNDEYFSD
KYRYVDEEDIDEDXXGNDEFEIDVEGDFQEDDFEEEYAFY*iklffikk****fdn**ls
siitl*yyfnnntff*ysktlq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLB615 (SLB615Q) /CSM/SL/SLB6-A/SLB615Q.Seq.d/                        579   e-164
SSM572 (SSM572Q) /CSM/SS/SSM5-C/SSM572Q.Seq.d/                        571   e-162
SSM396 (SSM396Q) /CSM/SS/SSM3-D/SSM396Q.Seq.d/                        571   e-162
SSL605 (SSL605Q) /CSM/SS/SSL6-A/SSL605Q.Seq.d/                        571   e-162
SSK815 (SSK815Q) /CSM/SS/SSK8-A/SSK815Q.Seq.d/                        571   e-162
SSJ101 (SSJ101Q) /CSM/SS/SSJ1-A/SSJ101Q.Seq.d/                        571   e-162
SSH577 (SSH577Q) /CSM/SS/SSH5-D/SSH577Q.Seq.d/                        571   e-162
SSH465 (SSH465Q) /CSM/SS/SSH4-C/SSH465Q.Seq.d/                        571   e-162
SSG296 (SSG296Q) /CSM/SS/SSG2-D/SSG296Q.Seq.d/                        571   e-162
SSF391 (SSF391Q) /CSM/SS/SSF3-D/SSF391Q.Seq.d/                        571   e-162
own update 2001. 8.26
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU033920) Dictyostelium discoideum slug cDNA, clone SLB615.      579   e-166  2
(AU052377) Dictyostelium discoideum slug cDNA, clone SLD220.      571   e-163  2
(AU038245) Dictyostelium discoideum slug cDNA, clone SSH465.      571   e-163  2
(AU034608) Dictyostelium discoideum slug cDNA, clone SLC616.      571   e-163  2
(AU054006) Dictyostelium discoideum slug cDNA, clone SLK408.      571   e-163  2
(AU053421) Dictyostelium discoideum slug cDNA, clone SLI617.      571   e-163  2
(AU053322) Dictyostelium discoideum slug cDNA, clone SLI385.      571   e-163  2
(AU052795) Dictyostelium discoideum slug cDNA, clone SLF114.      571   e-163  2
(AU037742) Dictyostelium discoideum slug cDNA, clone SSE240.      571   e-163  2
(AU052975) Dictyostelium discoideum slug cDNA, clone SLF418.      571   e-163  2
dna update 2009. 2.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr...    90   2e-17
protein update 2009. 1.20
PSORT 

 psg: 0.90  gvh: 0.53  alm: 0.52  top: 0.23  tms: 0.00  mit: 0.27  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 32.0 %: nuclear
	 20.0 %: extracellular, including cell wall
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SLB615 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLB615Z
3' end seq. 
>SLB615Z.Seq
----------CGTCACTCAACTGCCTCAACAATTGCCTCATTAGTCACTGGTACCACAAG
TGGTGGTGGTGGTATGGGTTCATTTGGTGGTCGATCCGATGAAGAATCAAGTGATCCAAA
TGCTATACTTGGTCTCTTTGAAGACGATATTTTCTGGGGTGATAATGATGAATACTTTAG
TGATAAGTACCGTTATGTTGATGAAGAAGATATTGATGAAGATTNNNNTGGTAATGATGA
ATTTGAAATTGATGTTGAAGGTGATTTCCAAGAAGATGATTTCGAAGAAGAATATGCATT
TTATTAAATTAAACTTTTTTTCATAAAAAAATAATAATAATAATTTGATAACTAATGATT
ATCATCAATAATAACATTATAATATTACTTTAATAACAATACTTTTTTTTAATATTCAAA
GACTTTACAAA
Length of 3' end seq. 421
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -