SLB553
Library SL
(Link to library)
Clone ID SLB553
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16327-1
Original site URL
Representative seq. ID SLB553Z
(Link to Original site)
Representative DNA sequence
>SLB553 (SLB553Q) /CSM/SL/SLB5-C/SLB553Q.Seq.d/
XXXXXXXXXXTATTTCACAACAACATTGGCCAATCAAAATCCAGTTTGTGCTTCAGTAGA
TGTCATACAAAATGTTTGTACTGAGGTTTGTGGTAGATTTGTCCGTTAAATTCCTGATGC
TACCAATACAAATCAATTCACTTTTGCCGAATATACTACAAACCAATGTACTGTTCAAGT
AACACCAGCTGTAACAAATACATTTACTTGCGCTGATCAAACTTCTTCACATGCACTCGG
TTCTGATTGGAGTGGAGTTTGTAAAATCACTGCCACACCCGCACCAACAGTTACACCAAC
AGTTACACCAACAGTTACACCAACAGTAACACCAACACCAACAAATACACCAAATCCAAC
CCCATCCCAAACATCAACAACAACTGGTTCTGCTTCAACTGTTGTTGCAAGTTTATCACT
CATTATTTTCTCAATGATTCTTTCCCTTTGTTAATTTTAAAAATAACAAATGGTAAAAAT
TATTTGGCATTTTCAAGTACAATTTTAAATTTTTCAAAAAAAAATAAAATTAAATAAATA
ATTAAATAAATTAATTAATAAAAAAAAAA
sequence update 1998. 4.13
Translated Amino Acid sequence
---ftttlanqnpvcasvdviqnvctevcgrfvr*IPDATNTNQFTFAEYTTNQCTVQVT
PAVTNTFTCADQTSSHALGSDWSGVCKITATPAPTVTPTVTPTVTPTVTPTPTNTPNPTP
SQTSTTTGSASTVVASLSLIIFSMILSLC*f*k*qmvkiiwhfqvqf*ifqkkiklnk*l
nklinkkk


Translated Amino Acid sequence (All Frames)
Frame A:
---isqqhwpikiqfvlq*msykmfvlrfvvdlsvkflmlpiqinsllpnilqtnvlfk*
hql*qihllalikllhmhsvligvefvkslphphqqlhqqlhqqlhqq*hqhqqihqiqp
hpkhqqqlvllqlllqvyhslfsq*ffpfvnfknnkw*klfgifkynfkffkkk*n*inn
*in*likkk


Frame B:
---fhnnigqsksslcfsrchtkcly*glw*icplns*cyqyksihfcriyykpmycssn
tscnkyiylr*snfftctrf*lewsl*nhchtrtnsytnsytnsytnsntntnkytksnp
ipninnnwfcfnccckfithyflndsfpllilkitngknylafsstilnfskknkik*ii
k*in**kk


Frame C:
---ftttlanqnpvcasvdviqnvctevcgrfvr*IPDATNTNQFTFAEYTTNQCTVQVT
PAVTNTFTCADQTSSHALGSDWSGVCKITATPAPTVTPTVTPTVTPTVTPTPTNTPNPTP
SQTSTTTGSASTVVASLSLIIFSMILSLC*f*k*qmvkiiwhfqvqf*ifqkkiklnk*l
nklinkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLB553 (SLB553Q) /CSM/SL/SLB5-C/SLB553Q.Seq.d/ 551 e-156
SSM525 (SSM525Q) /CSM/SS/SSM5-B/SSM525Q.Seq.d/ 543 e-153
SSL705 (SSL705Q) /CSM/SS/SSL7-A/SSL705Q.Seq.d/ 543 e-153
SSL117 (SSL117Q) /CSM/SS/SSL1-A/SSL117Q.Seq.d/ 543 e-153
SSJ770 (SSJ770Q) /CSM/SS/SSJ7-C/SSJ770Q.Seq.d/ 543 e-153
SSJ671 (SSJ671Q) /CSM/SS/SSJ6-C/SSJ671Q.Seq.d/ 543 e-153
SSI759 (SSI759Q) /CSM/SS/SSI7-C/SSI759Q.Seq.d/ 543 e-153
SSI680 (SSI680Q) /CSM/SS/SSI6-D/SSI680Q.Seq.d/ 543 e-153
SSI240 (SSI240Q) /CSM/SS/SSI2-B/SSI240Q.Seq.d/ 543 e-153
SSI169 (SSI169Q) /CSM/SS/SSI1-C/SSI169Q.Seq.d/ 543 e-153

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU033875) Dictyostelium discoideum slug cDNA, clone SLB553. 519 e-174 2
(BJ399383) Dictyostelium discoideum cDNA clone:dds5o14, 3' e... 511 e-172 2
(BJ382433) Dictyostelium discoideum cDNA clone:ddc44a20, 3' ... 511 e-172 2
(BJ382397) Dictyostelium discoideum cDNA clone:ddc44i17, 3' ... 511 e-172 2
(AU061817) Dictyostelium discoideum slug cDNA, clone SLG216. 511 e-172 2
(BJ395534) Dictyostelium discoideum cDNA clone:dds39p05, 5' ... 511 e-172 2
(C89950) Dictyostelium discoideum slug cDNA, clone SSG681. 511 e-172 2
(C90034) Dictyostelium discoideum slug cDNA, clone SSG122. 511 e-172 2
(BJ380712) Dictyostelium discoideum cDNA clone:ddc39f03, 3' ... 511 e-172 2
(BJ366462) Dictyostelium discoideum cDNA clone:ddc39f03, 5' ... 511 e-172 2
dna update 2009. 2. 7
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54LC3) RecName: Full=Ponticulin-like protein C2; Flags: Precur... 48 2e-04
CP001322_2279(CP001322|pid:none) Desulfatibacillum alkenivorans ... 32 8.7

protein update 2009. 6. 1
PSORT

psg: 0.75 gvh: 0.53 alm: 0.21 top: 0.50 tms: 0.07 mit: 0.24 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 1.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

20.0 %: cytoplasmic
16.0 %: nuclear
16.0 %: vesicles of secretory system
12.0 %: plasma membrane
8.0 %: Golgi
8.0 %: endoplasmic reticulum
8.0 %: mitochondrial
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for SLB553 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLB553Z
3' end seq.
>SLB553Z.Seq
----------TATTTCACAACAACATTGGCCAATCAAAATCCAGTTTGTGCTTCAGTAGA
TGTCATACAAAATGTTTGTACTGAGGTTTGTGGTAGATTTGTCCGTTAAATTCCTGATGC
TACCAATACAAATCAATTCACTTTTGCCGAATATACTACAAACCAATGTACTGTTCAAGT
AACACCAGCTGTAACAAATACATTTACTTGCGCTGATCAAACTTCTTCACATGCACTCGG
TTCTGATTGGAGTGGAGTTTGTAAAATCACTGCCACACCCGCACCAACAGTTACACCAAC
AGTTACACCAACAGTTACACCAACAGTAACACCAACACCAACAAATACACCAAATCCAAC
CCCATCCCAAACATCAACAACAACTGGTTCTGCTTCAACTGTTGTTGCAAGTTTATCACT
CATTATTTTCTCAATGATTCTTTCCCTTTGTTAATTTTAAAAATAACAAATGGTAAAAAT
TATTTGGCATTTTCAAGTACAATTTTAAATTTTTCAAAAAAAAATAAAATTAAATAAATA
ATTAAATAAATTAATTAATAAAAAAAAAA
Length of 3' end seq. 559
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -