AFK138
Library AF
(Link to library)
Clone ID AFK138
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16252-1
Original site URL
Representative seq. ID AFK138P
(Link to Original site)
Representative DNA sequence
>AFK138 (AFK138Q) /CSM/AF/AFK1-B/AFK138Q.Seq.d/
CACCCACTTATTACTTTATTTTTTTTTATCTCTATCTATATATATATCATTTTTTAAAAT
GAGCGTCATCAAATCAATTAAAGCCAGAGAAATTTTAGATTCACGTGGTAACCCAACTGT
TGAAGTTGACCTTTACACCGAAAAAGGTGGTGTTGTTTCATCATTCAGAGCTGCAGTTCC
ATCAGGTGCATCAACTGGTATTTATGAAGCTGTTGAATTAAGAGATGGTGATAAATCAAG
ATACTTAGGTAAAGGTGTACTCAAAGCAATCAAAAACATTCTCGAAGTCATTCAACCAGC
CGTCATTGGTAAATCAGTTTCCGATCAAGCTGCTATCGATAAATTAATGATCGATCTCGA
TGGTACCCCAAATAAAGGTAAATTAGGTGCCAACGCTATCCTTGCAGTCAGTTTAGCTGT
TTGCAGAGCTGGTGCTGCTGATAGAAATTTACCACTTTACAAATATATCTCAGAAATTGC
AGGTACTAAAATGAGATTACCAGTTCCAGCATTCAATGTTATCAATGGTGGTTCACATGC
AGGTAATAAATTAGCTATGCAAGAATTTATGATTTTACCAGTTGGTGCTAAAGATTTCAA
TGAAGCCTATCGTATGGGTTCAGAAGXXXXXXXXXXATGGATTGTGNTGCCTCTGAATTC
AAAGTTGAAAATGGTTACGATCTTGACTTCAAAACTAAAAACAATGACGGTTCAGCTGTT
ATCTCTGGTGAAAAATTAGGTGATCTCTACAGAGAATTCATTAAAGAATATCCAATCATT
TCAATTGAAGATCCATTTGATCAAGATGATTGGGAATCATACACTAAATTAACAGCATCA
GTTGATATTCAAATTGTTGGTGATGATTTACTTGTTACCAACCCAGAAAGAATTAAGACT
GGTATTGAAAAGAAAGCATGTAATGCTCTTTTATTAAAAGTTAACCAAATTGGTTCAGTC
ACTGAATCAATTCGTGCCGCTCTTGACTCAAAGAATGCATCATGGGGTGTCATGGTTAGC
CATCGTTCAGGTGAAACTGAAGATACCTTCATTGCTGATTTAGTTGTTGGTTTAGGTACT
GGTCAAATTAAAACTGGTGCTCCATGTAGATCAGAAAGATTAGCCAAATACAATCAACTT
GTTAGAATTAACGAAGAGTTAGGTGAAAACCATAACTATGC
sequence update 2001. 6. 1
Translated Amino Acid sequence
THLLLYFFLSLSIYISFFKMSVIKSIKAREILDSRGNPTVEVDLYTEKGGVVSSFRAAVP
SGASTGIYEAVELRDGDKSRYLGKGVLKAIKNILEVIQPAVIGKSVSDQAAIDKLMIDLD
GTPNKGKLGANAILAVSLAVCRAGAADRNLPLYKYISEIAGTKMRLPVPAFNVINGGSHA
GNKLAMQEFMILPVGAKDFNEAYRMGSE---

---MDCXASEFKVENGYDLDFKTKNNDGSAVISGEKLGDLYREFIKEYPIISIEDPFDQD
DWESYTKLTASVDIQIVGDDLLVTNPERIKTGIEKKACNALLLKVNQIGSVTESIRAALD
SKNASWGVMVSHRSGETEDTFIADLVVGLGTGQIKTGAPCRSERLAKYNQLVRINEELGE
NHNY


Translated Amino Acid sequence (All Frames)
Frame A:
hplitlfffisiyiyiif*nerhqin*sqrnfrftw*pnc*s*plhrkrwccfiiqscss
ircinwyl*sc*ikrw**ikilr*rctqsnqkhsrshstsrhw*isfrsscyr*indrsr
wypk*r*ircqrypcsqfsclqswcc**kfttlqiylrncry*neitsssiqcyqwwftc
r**isyariydftswc*rfq*slsygfr---

---MDCXASEFKVENGYDLDFKTKNNDGSAVISGEKLGDLYREFIKEYPIISIEDPFDQD
DWESYTKLTASVDIQIVGDDLLVTNPERIKTGIEKKACNALLLKVNQIGSVTESIRAALD
SKNASWGVMVSHRSGETEDTFIADLVVGLGTGQIKTGAPCRSERLAKYNQLVRINEELGE
NHNY

Frame B:
THLLLYFFLSLSIYISFFKMSVIKSIKAREILDSRGNPTVEVDLYTEKGGVVSSFRAAVP
SGASTGIYEAVELRDGDKSRYLGKGVLKAIKNILEVIQPAVIGKSVSDQAAIDKLMIDLD
GTPNKGKLGANAILAVSLAVCRAGAADRNLPLYKYISEIAGTKMRLPVPAFNVINGGSHA
GNKLAMQEFMILPVGAKDFNEAYRMGSE---

---wivxplnsklkmvtiltsklktmtvqllslvkn*vistenslkniqsfqlkihlikm
ignhtln*qhqlifkllvmiyllptqkelrlvlkrkhvmlfy*kltklvqslnqfvpllt
qrmhhgvswlaivqvklkipslli*llv*vlvklklvlhvdqkd*pntinlleltks*vk
titm

Frame C:
ptyyfiffylylyiyhflk*assnqlkpekf*ihvvtqllkltftpkkvvlfhhselqfh
qvhqlvfmklln*emvinqdt*vkvyskqsktfsksfnqpslvnqfpikllsin**sism
vpqikvn*vptlslqsv*lfaelvllieiyhftnisqklqvlk*dyqfqhsmlsmvvhmq
vin*lcknl*fyqlvlkismkpivwvqk---

---glxcl*iqs*kwlrs*lqn*kq*rfscylw*kir*slqrih*risnhfn*rsi*sr*
lgiih*insis*ysncw**ftcyqprkn*dwy*kesm*csfiks*pnwfsh*inscrs*l
kecimgchg*psfr*n*rylhc*fscwfrywsn*nwcsm*irkisqiqstc*n*rrvr*k
p*lc

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFK138 (AFK138Q) /CSM/AF/AFK1-B/AFK138Q.Seq.d/ 2222 0.0
VFB851 (VFB851Q) /CSM/VF/VFB8-C/VFB851Q.Seq.d/ 1179 0.0
SSM734 (SSM734Q) /CSM/SS/SSM7-B/SSM734Q.Seq.d/ 1179 0.0
SFH339 (SFH339Q) /CSM/SF/SFH3-B/SFH339Q.Seq.d/ 1179 0.0
SFE744 (SFE744Q) /CSM/SF/SFE7-B/SFE744Q.Seq.d/ 1179 0.0
SFB722 (SFB722Q) /CSM/SF/SFB7-A/SFB722Q.Seq.d/ 1179 0.0
CFD322 (CFD322Q) /CSM/CF/CFD3-A/CFD322Q.Seq.d/ 1179 0.0
AFO869 (AFO869Q) /CSM/AF/AFO8-C/AFO869Q.Seq.d/ 1179 0.0
AFO860 (AFO860Q) /CSM/AF/AFO8-C/AFO860Q.Seq.d/ 1179 0.0
AFO841 (AFO841Q) /CSM/AF/AFO8-B/AFO841Q.Seq.d/ 1179 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

Y17298|Y17298.1 Cunninghamella elegans mRNA for enolase. 86 8e-60 9
BD183626|BD183626.1 Material for diagnosing malaria and immune antigen for suppressing growth of plasmodium. 76 3e-58 9
BD183625|BD183625.1 Material for diagnosing malaria and immune antigen for suppressing growth of plasmodium. 76 3e-58 9
AB026051|AB026051.1 Plasmodium falciparum mRNA for enolase, complete cds. 76 3e-58 9
U00152|U00152.1 Plasmodium falciparum enolase gene complete cds. 76 2e-56 8
X80474|X80474.1 N.frontalis enolase gene. 64 7e-56 9
BM165201|BM165201.1 EST567724 PyBS Plasmodium yoelii yoelii cDNA clone PYCMI87 5' end, mRNA sequence. 92 4e-47 4
AE014831|AE014831.1 Plasmodium falciparum 3D7 chromosome 10 section 3 of 7 of the complete sequence. 76 9e-41 12
AX619982|AX619982.1 Sequence 2945 from Patent WO02094868. 50 3e-40 9
AX489475|AX489475.1 Sequence 6775 from Patent WO02053728. 56 3e-40 9
dna update 2003. 9. 7
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54RK5) RecName: Full=Enolase A; EC=4.2.1.11; AltName:... 362 1e-98
EF137905_1(EF137905|pid:none) Helianthus annuus plastid enolase ... 273 1e-71
AF100985_1(AF100985|pid:none) Penaeus monodon phosphopyruvate hy... 269 2e-70
AC016662_10(AC016662|pid:none) Arabidopsis thaliana chromosome 1... 266 1e-69
AK243111_1(AK243111|pid:none) Oryza sativa Japonica Group cDNA, ... 264 5e-69
EU964132_1(EU964132|pid:none) Zea mays clone 276124 enolase mRNA... 264 5e-69
DQ497988_1(DQ497988|pid:none) Polypterus senegalus enolase B mRN... 262 2e-68
T12341(T12341) phosphopyruvate hydratase (EC 4.2.1.11) - common ... 261 2e-68
(Q43130) RecName: Full=Enolase; EC=4.2.1.11; AltName: F... 261 4e-68
(P56252) RecName: Full=Enolase; EC=4.2.1.11; AltName: F... 261 4e-68
protein update 2009. 4.24
PSORT

psg: 0.95 gvh: 0.51 alm: 0.32 top: 0.57 tms: 0.07 mit: 0.38 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.04 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

48.0 %: nuclear
28.0 %: cytoplasmic
8.0 %: Golgi
8.0 %: mitochondrial
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for AFK138 is nuc

5' end seq. ID AFK138F
5' end seq.
>AFK138F.Seq
CACCCACTTATTACTTTATTTTTTTTTATCTCTATCTATATATATATCATTTTTTAAAAT
GAGCGTCATCAAATCAATTAAAGCCAGAGAAATTTTAGATTCACGTGGTAACCCAACTGT
TGAAGTTGACCTTTACACCGAAAAAGGTGGTGTTGTTTCATCATTCAGAGCTGCAGTTCC
ATCAGGTGCATCAACTGGTATTTATGAAGCTGTTGAATTAAGAGATGGTGATAAATCAAG
ATACTTAGGTAAAGGTGTACTCAAAGCAATCAAAAACATTCTCGAAGTCATTCAACCAGC
CGTCATTGGTAAATCAGTTTCCGATCAAGCTGCTATCGATAAATTAATGATCGATCTCGA
TGGTACCCCAAATAAAGGTAAATTAGGTGCCAACGCTATCCTTGCAGTCAGTTTAGCTGT
TTGCAGAGCTGGTGCTGCTGATAGAAATTTACCACTTTACAAATATATCTCAGAAATTGC
AGGTACTAAAATGAGATTACCAGTTCCAGCATTCAATGTTATCAATGGTGGTTCACATGC
AGGTAATAAATTAGCTATGCAAGAATTTATGATTTTACCAGTTGGTGCTAAAGATTTCAA
TGAAGCCTATCGTATGGGTTCAGAAG----------
Length of 5' end seq. 626
3' end seq. ID AFK138Z
3' end seq.
>AFK138Z.Seq
----------ATGGATTGTGNTGCCTCTGAATTCAAAGTTGAAAATGGTTACGATCTTGA
CTTCAAAACTAAAAACAATGACGGTTCAGCTGTTATCTCTGGTGAAAAATTAGGTGATCT
CTACAGAGAATTCATTAAAGAATATCCAATCATTTCAATTGAAGATCCATTTGATCAAGA
TGATTGGGAATCATACACTAAATTAACAGCATCAGTTGATATTCAAATTGTTGGTGATGA
TTTACTTGTTACCAACCCAGAAAGAATTAAGACTGGTATTGAAAAGAAAGCATGTAATGC
TCTTTTATTAAAAGTTAACCAAATTGGTTCAGTCACTGAATCAATTCGTGCCGCTCTTGA
CTCAAAGAATGCATCATGGGGTGTCATGGTTAGCCATCGTTCAGGTGAAACTGAAGATAC
CTTCATTGCTGATTTAGTTGTTGGTTTAGGTACTGGTCAAATTAAAACTGGTGCTCCATG
TAGATCAGAAAGATTAGCCAAATACAATCAACTTGTTAGAATTAACGAAGAGTTAGGTGA
AAACCATAACTATGC
Length of 3' end seq. 545
Connected seq. ID AFK138P
Connected seq.
>AFK138P.Seq
CACCCACTTATTACTTTATTTTTTTTTATCTCTATCTATATATATATCATTTTTTAAAAT
GAGCGTCATCAAATCAATTAAAGCCAGAGAAATTTTAGATTCACGTGGTAACCCAACTGT
TGAAGTTGACCTTTACACCGAAAAAGGTGGTGTTGTTTCATCATTCAGAGCTGCAGTTCC
ATCAGGTGCATCAACTGGTATTTATGAAGCTGTTGAATTAAGAGATGGTGATAAATCAAG
ATACTTAGGTAAAGGTGTACTCAAAGCAATCAAAAACATTCTCGAAGTCATTCAACCAGC
CGTCATTGGTAAATCAGTTTCCGATCAAGCTGCTATCGATAAATTAATGATCGATCTCGA
TGGTACCCCAAATAAAGGTAAATTAGGTGCCAACGCTATCCTTGCAGTCAGTTTAGCTGT
TTGCAGAGCTGGTGCTGCTGATAGAAATTTACCACTTTACAAATATATCTCAGAAATTGC
AGGTACTAAAATGAGATTACCAGTTCCAGCATTCAATGTTATCAATGGTGGTTCACATGC
AGGTAATAAATTAGCTATGCAAGAATTTATGATTTTACCAGTTGGTGCTAAAGATTTCAA
TGAAGCCTATCGTATGGGTTCAGAAG----------ATGGATTGTGNTGCCTCTGAATTC
AAAGTTGAAAATGGTTACGATCTTGACTTCAAAACTAAAAACAATGACGGTTCAGCTGTT
ATCTCTGGTGAAAAATTAGGTGATCTCTACAGAGAATTCATTAAAGAATATCCAATCATT
TCAATTGAAGATCCATTTGATCAAGATGATTGGGAATCATACACTAAATTAACAGCATCA
GTTGATATTCAAATTGTTGGTGATGATTTACTTGTTACCAACCCAGAAAGAATTAAGACT
GGTATTGAAAAGAAAGCATGTAATGCTCTTTTATTAAAAGTTAACCAAATTGGTTCAGTC
ACTGAATCAATTCGTGCCGCTCTTGACTCAAAGAATGCATCATGGGGTGTCATGGTTAGC
CATCGTTCAGGTGAAACTGAAGATACCTTCATTGCTGATTTAGTTGTTGGTTTAGGTACT
GGTCAAATTAAAACTGGTGCTCCATGTAGATCAGAAAGATTAGCCAAATACAATCAACTT
GTTAGAATTAACGAAGAGTTAGGTGAAAACCATAACTATGC
Length of connected seq. 1171
Full length Seq ID -
Full length Seq. -
Length of full length seq. -