AFK137
Library AF
(Link to library)
Clone ID AFK137
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13893-1
Original site URL
Representative seq. ID AFK137E
(Link to Original site)
Representative DNA sequence
>AFK137 (AFK137Q) /CSM/AF/AFK1-B/AFK137Q.Seq.d/
ACTGTTGGCCTCTGATGAAGATGCAACCAAATGTTCATCAGCTCTTATGGAGACTGTTCA
ATCTAACACAAGAATTACTCTCTATCCATTATCATCAAAAATTTTCTTTTATTATAGTTT
ATCTTATGAAATGACAAATAATCTTCATGAAGTTAGATCAACATTATTATCAGCACTTCG
TACAGCAACATTAAGACATAATGATGAAGGTCAAGCAACAATTATTAATTTATTATTGAG
AAATTATTTAGAATATAATTTATTTGAACAAGCAGATAAATTATTGGCCAATACACAATT
CCCAGAATCTGCATCAAGCAATCAATTTGCACGTTATTTCTACTATCAAGGTAGAATTAG
AGCCATTCAATTAGAGTATGCTGAATCATTTAAATTCCTCACACAAGCAATTAGAAAAGC
ACCACAAAACACTGCTGGTGGTTTCAGAAGAACTGTTTATAAACTTTTATCCAATCGTTC
AATTATTGATGGGTGAAATTCCAGAAAGAAATACTTTCTCACAAAAACAATTAAAAATTG
CACTCAAACCATACTTTCATTTAACTGAAGCCGTTAGAGTTGGTGATTTAGGTTCTTTCA
ATCAAGCTTTGGAACAAAATTCAGACATTTTCAAATCAGATCAAACTTTTACCCTTGTTC
AAAGATTACGTTCAAATGTTATCAAAGCTGGACTTAAAAAATTAAATACTGCTTACTCTA
GAATCTCTTTCAATGATATTTGTACAAAATTAAAATTTGATGGTACTACTCAAGATATCA
TGTTTATTATTGCAAAGACTATTAAAGATGGTGTTATTGATGCAACTATNAATTATGAAG
GTGGTTACCTCCAAAGTAGAGAAAATATTGATGCTTATTCAACTCAAGAACCATTACATG
CTTTCTCCAATAGAATTGATATTTGTTTAAAGATTCACAATGATTCCCTTAAAGCTATGA
GATTCCATCCAGATTTAAATAAAGCTGAAAC
sequence update 2001. 6. 9
Translated Amino Acid sequence
cwplmkmqpnvhqllwrlfnltqellsihyhqkfsfiivylmk*qiifmkldqhyyqhfv
qqh*dimmkvkqqlliyy*eii*niiylnkqinywpihnsqnlhqainlhvistikvele
pfn*SMLNHLNSSHKQLEKHHKTLLVVSEELFINFYPIVQLLMGEIPERNTFSQKQLKIA
LKPYFHLTEAVRVGDLGSFNQALEQNSDIFKSDQTFTLVQRLRSNVIKAGLKKLNTAYSR
ISFNDICTKLKFDGTTQDIMFIIAKTIKDGVIDATXNYEGGYLQSRENIDAYSTQEPLHA
FSNRIDICLKIHNDSLKAMRFHPDLNKAE


Translated Amino Acid sequence (All Frames)
Frame A:
tvgl**rcnqmfissygdcsi*hknyslsiiiknflll*fil*ndk*ss*s*iniiists
ysnikt***rssnny*fiieklfri*fi*tsr*iigqytipricikqsictlfllsr*n*
shsirvc*ii*iphtsn*ksttkhcwwfqkncl*tfiqsfny*wvkfqkeilshknn*kl
hsnhtfi*lkplelvi*vlsiklwnkiqtfsnqikllplfkdyvqmlskldlkn*illtl
eslsmifvqn*nlmvllkisclllqrllkmvllmqlximkvvtskvekilmliqlknhym
lspielifv*rftmiplkl*dsiqi*iklk


Frame B:
llasdedatkcssalmetvqsntritlyplsskiffyyslsyemtnnlhevrstllsalr
tatlrhndegqatiinlllrnyleynlfeqadkllantqfpesassnqfaryfyyqgrir
aiqleyaesfkfltqairkapqntaggfrrtvykllsnrsiidg*nsrkkyfltktiknc
tqtilsfn*sr*sw*frffqssfgtkfrhfqirsnfypcskitfkcyqswt*kikycll*
nlfq*ylykiki*wyysryhvyyckdy*rwcy*cnyxl*rwlppk*rky*clfnsrtitc
flq*n*ylfkdsq*fp*syeipsrfk*s*n


Frame C:
cwplmkmqpnvhqllwrlfnltqellsihyhqkfsfiivylmk*qiifmkldqhyyqhfv
qqh*dimmkvkqqlliyy*eii*niiylnkqinywpihnsqnlhqainlhvistikvele
pfn*SMLNHLNSSHKQLEKHHKTLLVVSEELFINFYPIVQLLMGEIPERNTFSQKQLKIA
LKPYFHLTEAVRVGDLGSFNQALEQNSDIFKSDQTFTLVQRLRSNVIKAGLKKLNTAYSR
ISFNDICTKLKFDGTTQDIMFIIAKTIKDGVIDATXNYEGGYLQSRENIDAYSTQEPLHA
FSNRIDICLKIHNDSLKAMRFHPDLNKAE


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFK137 (AFK137Q) /CSM/AF/AFK1-B/AFK137Q.Seq.d/ 1959 0.0
VFJ116 (VFJ116Q) /CSM/VF/VFJ1-A/VFJ116Q.Seq.d/ 1330 0.0
VFD314 (VFD314Q) /CSM/VF/VFD3-A/VFD314Q.Seq.d/ 1320 0.0
AFE606 (AFE606Q) /CSM/AF/AFE6-A/AFE606Q.Seq.d/ 1312 0.0
SFK889 (SFK889Q) /CSM/SF/SFK8-D/SFK889Q.Seq.d/ 1302 0.0
AFL859 (AFL859Q) /CSM/AF/AFL8-C/AFL859Q.Seq.d/ 1255 0.0
SFI222 (SFI222Q) /CSM/SF/SFI2-A/SFI222Q.Seq.d/ 1253 0.0
AFC538 (AFC538Q) /CSM/AF/AFC5-B/AFC538Q.Seq.d/ 1237 0.0
SFD788 (SFD788Q) /CSM/SF/SFD7-D/SFD788Q.Seq.d/ 1229 0.0
AHH621 (AHH621Q) /CSM/AH/AHH6-A/AHH621Q.Seq.d/ 1164 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AZ528085|AZ528085.1 ENTCK89TR Entamoeba histolytica Sheared DNA Entamoeba histolyticagenomic, genomic survey sequence. 40 1e-06 4
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence. 34 3e-05 13
AC116920|AC116920.3 Dictyostelium discoideum chromosome 2 map 4415041-4520361 strain AX4, complete sequence. 34 4e-05 13
BH148201|BH148201.1 ENTPS14TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 40 7e-05 3
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 34 1e-04 16
AE014848|AE014848.1 Plasmodium falciparum 3D7 chromosome 12, section 5 of 9 of the complete sequence. 36 3e-04 16
AE017263|AE017263.1 Mesoplasma florum L1 complete genome. 38 3e-04 24
AL844506|AL844506.1 Plasmodium falciparum chromosome 7. 32 3e-04 28
AL844509|AL844509.1 Plasmodium falciparum chromosome 13. 36 3e-04 26
AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome. 36 3e-04 16
dna update 2004. 7.29
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q1ZXD3) RecName: Full=26S proteasome non-ATPase regulatory subu... 340 4e-92
AJ719445_1(AJ719445|pid:none) Gallus gallus mRNA for hypothetica... 180 2e-73
D67025_1(D67025|pid:none) Homo sapiens mRNA for proteasome subun... 181 7e-73
AY891635_1(AY891635|pid:none) Synthetic construct Homo sapiens c... 181 7e-73
CR456772_1(CR456772|pid:none) Homo sapiens full open reading fra... 181 7e-73
(O43242) RecName: Full=26S proteasome non-ATPase regulatory subu... 181 7e-73
AK145488_1(AK145488|pid:none) Mus musculus blastocyst blastocyst... 181 7e-73
BC085881_1(BC085881|pid:none) Rattus norvegicus proteasome (pros... 181 7e-73
AK054611_1(AK054611|pid:none) Homo sapiens cDNA FLJ30049 fis, cl... 181 7e-73
AB169643_1(AB169643|pid:none) Macaca fascicularis brain cDNA, cl... 181 7e-73
protein update 2009. 6.29
PSORT

psg: 0.42 gvh: 0.42 alm: 0.38 top: 0.53 tms: 0.00 mit: 0.24 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: cytoplasmic
20.0 %: nuclear
8.0 %: mitochondrial
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for AFK137 is cyt

5' end seq. ID AFK137F
5' end seq.
>AFK137F.Seq
ACTGTTGGCCTCTGATGAAGATGCAACCAAATGTTCATCAGCTCTTATGGAGACTGTTCA
ATCTAACACAAGAATTACTCTCTATCCATTATCATCAAAAATTTTCTTTTATTATAGTTT
ATCTTATGAAATGACAAATAATCTTCATGAAGTTAGATCAACATTATTATCAGCACTTCG
TACAGCAACATTAAGACATAATGATGAAGGTCAAGCAACAATTATTAATTTATTATTGAG
AAATTATTTAGAATATAATTTATTTGAACAAGCAGATAAATTATTGGCCAATACACAATT
CCCAGAATCTGCATCAAGCAATCAATTTGCACGTTATTTCTACTATCAAGGTAGAATTAG
AGCCATTCAATTAGAGTATGCTGAATCATTTAAATTCCTCACACAAGCAATTAGAAAAGC
ACCACAAAACACTGCTGGTGGTTTCAGAAGAACTGTTTATAAACTTTTATCAATCGTTCA
ATTATTGATGGGTGAAATTCCAGAAAGAAATACTTTCTCACAAAAACAATTAAAAATTGC
ACTCAAACCATACTTTCATTTAACTGAAGCCGTTAGAGTTGGTGATTTAGGTTCTTTCAA
TCAAGCTTTGGAAC----------
Length of 5' end seq. 614
3' end seq. ID AFK137Z
3' end seq.
>AFK137Z.Seq
----------TGGTGGTTTCAGAAGANCTGTTTATAANCTTTTATCCAATCGTTCAATTA
TTGATGGGTGAAATTCCAGAAAGAAATACTTTCTCNCAAAAACAATTAAAAATTGCACTC
AAACCATACTTTCATTTAACTGAAGCCGTTAGAGTTGGTGATTTAGGTTCTTTCAATCAA
GCTTTGGAACAAAATTCAGACATTTTCAAATCAGATCAAACTTTTACCCTTGTTCAAAGA
TTACGTTCAAATGTTATCAAAGCTGGACTTAAAAAATTAAATACTGCTTACTCTAGAATC
TCTTTCAATGATATTTGTACAAAATTAAAATTTGATGGTACTACTCAAGATATCATGTTT
ATTATTGCAAAGACTATTAAAGATGGTGTTATTGATGCAACTATNAATTATGAAGGTGGT
TACCTCCAAAGTAGAGAAAATATTGATGCTTATTCAACTCAAGAACCATTACATGCTTTC
TCCAATAGAATTGATATTTGTTTAAAGATTCACAATGATTCCCTTAAAGCTATGAGATTC
CATCCAGATTTAAATAAAGCTGAAAC
Length of 3' end seq. 556
Connected seq. ID AFK137P
Connected seq.
>AFK137P.Seq
ACTGTTGGCCTCTGATGAAGATGCAACCAAATGTTCATCAGCTCTTATGGAGACTGTTCA
ATCTAACACAAGAATTACTCTCTATCCATTATCATCAAAAATTTTCTTTTATTATAGTTT
ATCTTATGAAATGACAAATAATCTTCATGAAGTTAGATCAACATTATTATCAGCACTTCG
TACAGCAACATTAAGACATAATGATGAAGGTCAAGCAACAATTATTAATTTATTATTGAG
AAATTATTTAGAATATAATTTATTTGAACAAGCAGATAAATTATTGGCCAATACACAATT
CCCAGAATCTGCATCAAGCAATCAATTTGCACGTTATTTCTACTATCAAGGTAGAATTAG
AGCCATTCAATTAGAGTATGCTGAATCATTTAAATTCCTCACACAAGCAATTAGAAAAGC
ACCACAAAACACTGCTGGTGGTTTCAGAAGAACTGTTTATAAACTTTTATCAATCGTTCA
ATTATTGATGGGTGAAATTCCAGAAAGAAATACTTTCTCACAAAAACAATTAAAAATTGC
ACTCAAACCATACTTTCATTTAACTGAAGCCGTTAGAGTTGGTGATTTAGGTTCTTTCAA
TCAAGCTTTGGAAC----------TGGTGGTTTCAGAAGANCTGTTTATAANCTTTTATC
CAATCGTTCAATTATTGATGGGTGAAATTCCAGAAAGAAATACTTTCTCNCAAAAACAAT
TAAAAATTGCACTCAAACCATACTTTCATTTAACTGAAGCCGTTAGAGTTGGTGATTTAG
GTTCTTTCAATCAAGCTTTGGAACAAAATTCAGACATTTTCAAATCAGATCAAACTTTTA
CCCTTGTTCAAAGATTACGTTCAAATGTTATCAAAGCTGGACTTAAAAAATTAAATACTG
CTTACTCTAGAATCTCTTTCAATGATATTTGTACAAAATTAAAATTTGATGGTACTACTC
AAGATATCATGTTTATTATTGCAAAGACTATTAAAGATGGTGTTATTGATGCAACTATNA
ATTATGAAGGTGGTTACCTCCAAAGTAGAGAAAATATTGATGCTTATTCAACTCAAGAAC
CATTACATGCTTTCTCCAATAGAATTGATATTTGTTTAAAGATTCACAATGATTCCCTTA
AAGCTATGAGATTCCATCCAGATTTAAATAAAGCTGAAAC
Length of connected seq. 1170
Full length Seq ID AFK137E
Full length Seq.
>AFK137E.Seq
ACTGTTGGCCTCTGATGAAGATGCAACCAAATGTTCATCAGCTCTTATGGAGACTGTTCA
ATCTAACACAAGAATTACTCTCTATCCATTATCATCAAAAATTTTCTTTTATTATAGTTT
ATCTTATGAAATGACAAATAATCTTCATGAAGTTAGATCAACATTATTATCAGCACTTCG
TACAGCAACATTAAGACATAATGATGAAGGTCAAGCAACAATTATTAATTTATTATTGAG
AAATTATTTAGAATATAATTTATTTGAACAAGCAGATAAATTATTGGCCAATACACAATT
CCCAGAATCTGCATCAAGCAATCAATTTGCACGTTATTTCTACTATCAAGGTAGAATTAG
AGCCATTCAATTAGAGTATGCTGAATCATTTAAATTCCTCACACAAGCAATTAGAAAAGC
ACCACAAAACACTGCTGGTGGTTTCAGAAGAACTGTTTATAAACTTTTATCCAATCGTTC
AATTATTGATGGGTGAAATTCCAGAAAGAAATACTTTCTCACAAAAACAATTAAAAATTG
CACTCAAACCATACTTTCATTTAACTGAAGCCGTTAGAGTTGGTGATTTAGGTTCTTTCA
ATCAAGCTTTGGAACAAAATTCAGACATTTTCAAATCAGATCAAACTTTTACCCTTGTTC
AAAGATTACGTTCAAATGTTATCAAAGCTGGACTTAAAAAATTAAATACTGCTTACTCTA
GAATCTCTTTCAATGATATTTGTACAAAATTAAAATTTGATGGTACTACTCAAGATATCA
TGTTTATTATTGCAAAGACTATTAAAGATGGTGTTATTGATGCAACTATNAATTATGAAG
GTGGTTACCTCCAAAGTAGAGAAAATATTGATGCTTATTCAACTCAAGAACCATTACATG
CTTTCTCCAATAGAATTGATATTTGTTTAAAGATTCACAATGATTCCCTTAAAGCTATGA
GATTCCATCCAGATTTAAATAAAGCTGAAAC
Length of full length seq. 991