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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLB454
Library SL
(Link to library)
Clone ID SLB454
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16249-1
Original site URL
Representative seq. ID SLB454E
(Link to Original site)
Representative DNA sequence 
>SLB454 (SLB454Q) /CSM/SL/SLB4-C/SLB454Q.Seq.d/
GTGCATCAACAGATGCAGTTTTATTGAATATCCGTACTAAACAAACTGTTAGTGATATAC
TCATGCCATATTCAAAGAACGTTGGTAAATATTTTGATTCTGCATGGTTAGGATCTAAAA
CAGTTAGATCAGATGACTATGGTTTAATCGGTCAAGGTACATTCAGTAGTGGAAAAATTA
CAATATCAAATGCTTTCATTCATTTACCAGATCCAATTGGTAAATGTGATTCATTGCCAT
TATTAAAATGTCCAGGTGGTTCGATTATGACATACTCTCGTAATGAAAATCGTTGTTTAG
CTTCTCCAACTTGCACTCAATCTTCATTCTGTACCTTGGGTATGCCACTTTGTCCAGCAG
GTTATCGTTTAGATCAATTCAGAGCAACTGAAGCAAATGGATGTCCAAAATATTATTGTG
ATCCAACCTTTGTTTGTAAAACACATTAATTTCTTTTTTTGTTAATTTTCTAAACAATTG
T
sequence update 1998. 4. 7
Translated Amino Acid sequence 
ASTDAVLLNIRTKQTVSDILMPYSKNVGKYFDSAWLGSKTVRSDDYGLIGQGTFSSGKIT
ISNAFIHLPDPIGKCDSLPLLKCPGGSIMTYSRNENRCLASPTCTQSSFCTLGMPLCPAG
YRLDQFRATEANGCPKYYCDPTFVCKTH*flfllif*ti
Translated Amino Acid sequence (All Frames) 
Frame A:
vhqqmqfy*isvlnkllviyschiqrtlvnililhg*dlkqldqmtmv*svkvhsvvekl
qyqmlsfiyqiqlvnvihchy*nvqvvrl*htlvmkivv*llqlalnlhsvpwvchfvqq
viv*inseqlkqmdvqniiviqplfvkhinfffc*fskql


Frame B:
cinrcsfieypy*tnc**ythaifkerw*if*fcmvri*ns*ir*lwfnrsryiq*wkny
nikcfhsftrsnw*m*fiaiikmsrwfdydils**kslfsfsnlhsifilylgyatlssr
lsfrsiqsn*skwmskill*snlcl*ntlisffvnflnnc


Frame C:
ASTDAVLLNIRTKQTVSDILMPYSKNVGKYFDSAWLGSKTVRSDDYGLIGQGTFSSGKIT
ISNAFIHLPDPIGKCDSLPLLKCPGGSIMTYSRNENRCLASPTCTQSSFCTLGMPLCPAG
YRLDQFRATEANGCPKYYCDPTFVCKTH*flfllif*ti
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM753 (SSM753Q) /CSM/SS/SSM7-C/SSM753Q.Seq.d/                        912   0.0
SSM721 (SSM721Q) /CSM/SS/SSM7-A/SSM721Q.Seq.d/                        912   0.0
SSM524 (SSM524Q) /CSM/SS/SSM5-A/SSM524Q.Seq.d/                        912   0.0
SSM411 (SSM411Q) /CSM/SS/SSM4-A/SSM411Q.Seq.d/                        912   0.0
SSM285 (SSM285Q) /CSM/SS/SSM2-D/SSM285Q.Seq.d/                        912   0.0
SSM240 (SSM240Q) /CSM/SS/SSM2-B/SSM240Q.Seq.d/                        912   0.0
SSK489 (SSK489Q) /CSM/SS/SSK4-D/SSK489Q.Seq.d/                        912   0.0
SSK447 (SSK447Q) /CSM/SS/SSK4-B/SSK447Q.Seq.d/                        912   0.0
SSJ893 (SSJ893Q) /CSM/SS/SSJ8-D/SSJ893Q.Seq.d/                        912   0.0
SSJ224 (SSJ224Q) /CSM/SS/SSJ2-A/SSJ224Q.Seq.d/                        912   0.0
own update 2001. 8.26
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...   898   0.0    2
(C91939) Dictyostelium discoideum slug cDNA, clone SSC502.        898   0.0    2
(C91564) Dictyostelium discoideum slug cDNA, clone SSK447.        898   0.0    2
(C90847) Dictyostelium discoideum slug cDNA, clone SSJ224.        898   0.0    2
(C92385) Dictyostelium discoideum slug cDNA, clone SSE726.        898   0.0    2
(C90356) Dictyostelium discoideum slug cDNA, clone SSI294.        898   0.0    2
(C89699) Dictyostelium discoideum slug cDNA, clone SSG158.        898   0.0    2
(C89617) Dictyostelium discoideum slug cDNA, clone SSA321.        898   0.0    2
(AU034814) Dictyostelium discoideum slug cDNA, clone SLE537.      898   0.0    2
(C92441) Dictyostelium discoideum slug cDNA, clone SSE548.        898   0.0    2
dna update 2009. 2. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116305_115(AC116305|pid:none) Dictyostelium discoideum chromos...   315   4e-85
AC116305_114(AC116305|pid:none) Dictyostelium discoideum chromos...   191   7e-48
AC116305_112(AC116305|pid:none) Dictyostelium discoideum chromos...   126   2e-28
AC116921_3(AC116921|pid:none) Dictyostelium discoideum chromosom...    78   1e-13
BC101017_1(BC101017|pid:none) Homo sapiens chromosome 12 open re...    43   0.003
AL033501_6(AL033501|pid:none) C.albicans cosmid Ca41C10.  &T1823...    37   0.23
FM992688_766(FM992688|pid:none) Candida dubliniensis CD36 chromo...    35   0.86
AE000666_396(AE000666|pid:none) Methanothermobacter thermautotro...    34   1.9
AJ311906_1(AJ311906|pid:none) Mus musculus mRNA for Muc5b protein.     34   1.9
CP000826_2689(CP000826|pid:none) Serratia proteamaculans 568, co...    33   3.3
protein update 2009. 7. 4
PSORT 

 psg: 0.62  gvh: 0.37  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for SLB454 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLB454E
Full length Seq. 
>SLB454E.Seq
GTGCATCAACAGATGCAGTTTTATTGAATATCCGTACTAAACAAACTGTTAGTGATATAC
TCATGCCATATTCAAAGAACGTTGGTAAATATTTTGATTCTGCATGGTTAGGATCTAAAA
CAGTTAGATCAGATGACTATGGTTTAATCGGTCAAGGTACATTCAGTAGTGGAAAAATTA
CAATATCAAATGCTTTCATTCATTTACCAGATCCAATTGGTAAATGTGATTCATTGCCAT
TATTAAAATGTCCAGGTGGTTCGATTATGACATACTCTCGTAATGAAAATCGTTGTTTAG
CTTCTCCAACTTGCACTCAATCTTCATTCTGTACCTTGGGTATGCCACTTTGTCCAGCAG
GTTATCGTTTAGATCAATTCAGAGCAACTGAAGCAAATGGATGTCCAAAATATTATTGTG
ATCCAACCTTTGTTTGTAAAACACATTAATTTCTTTTTTTGTTAATTTTCTAAACAATTG
T
Length of full length seq. 481