SLB439
Library SL
(Link to library)
Clone ID SLB439
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16455-1
Original site URL
Representative seq. ID SLB439Z
(Link to Original site)
Representative DNA sequence
>SLB439 (SLB439Q) /CSM/SL/SLB4-B/SLB439Q.Seq.d/
XXXXXXXXXXAGATGTCTACAAGATCGGTGGTATCGGTACTGTTCCAGTAGGTCGTGTCG
AAACTGGTATCATTAAACCAGGTATGGTCGTCACCTTTGCCCCAGCTGGTCTCTCAACTG
AAGTCAAATCAGTCGAAATGCATCACGAACAACTCCCAGAAGCCCGTCCAGGTGACAATG
TAGGTTTCAACGTTAAAAACGTTTCAGTCAAAGAAATTAAAAGAGGTATGGTCGCTGGTG
ACTCCAAAAACGATCCACCACAAGAAACTGAAAAATTCGTTGCTCAAGTTATCGTCCTCA
ACCATCCAGGTCAAATCCATGCTGGTTACTCACCAGTCTTAGATTGTCACACTGCTCACA
TTGCCTGTAAATTCACTGAAATCGTCGATAAAGTTGATCGTCGTACTGGTGCCGTCGTTG
CCAAAGAAGGTACTGCCGCCGTCGTCTTAAAGAATGGTGATGCCGCTATGGTCGAATTAA
CCCCATCTCGTCCAATGTGTGTTGAATCCTTCACTGAATACCCACCATTAGGTCGTTTCG
CCGTCAGAGATATGAGACAAACCGTCGCCGTCGGTGTCATCAAATCAACCGTCAAGAAAG
CCCCAGGTAAAGCCGGTGATAAGAAAGGTGCTGCTGCCCCATCAAAAAAGAAATAAATAA
ATAATATTTCTTAATAAATAGCATTTTATAATAATTTTAAAAAAAAAAAAAAAAAAAAA
sequence update 1998. 4. 7
Translated Amino Acid sequence
---DVYKIGGIGTVPVGRVETGIIKPGMVVTFAPAGLSTEVKSVEMHHEQLPEARPGDNV
GFNVKNVSVKEIKRGMVAGDSKNDPPQETEKFVAQVIVLNHPGQIHAGYSPVLDCHTAHI
ACKFTEIVDKVDRRTGAVVAKEGTAAVVLKNGDAAMVELTPSRPMCVESFTEYPPLGRFA
VRDMRQTVAVGVIKSTVKKAPGKAGDKKGAAAPSKKK*innis**iafynnfkkkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
---DVYKIGGIGTVPVGRVETGIIKPGMVVTFAPAGLSTEVKSVEMHHEQLPEARPGDNV
GFNVKNVSVKEIKRGMVAGDSKNDPPQETEKFVAQVIVLNHPGQIHAGYSPVLDCHTAHI
ACKFTEIVDKVDRRTGAVVAKEGTAAVVLKNGDAAMVELTPSRPMCVESFTEYPPLGRFA
VRDMRQTVAVGVIKSTVKKAPGKAGDKKGAAAPSKKK*innis**iafynnfkkkkkkk


Frame B:
---mstrsvvsvlfq*vvsklvslnqvwssplpqlvsqlksnqskcitnnsqkpvqvtm*
vstlktfqskklkevwslvtpktihhkklknsllklssstiqvksmlvthqs*ivtlltl
pvnslkssiklivvlvpslpkkvlppss*rmvmplwsn*phlvqcvlnpslnthh*vvsp
sei*dkpspsvssnqpsrkpqvkpvirkvllphqkrnk*iiflnk*hfiiilkkkkkk


Frame C:
---clqdrwyrycssrscrnwyh*trygrhlcpswsln*sqisrnasrttprspsr*qcr
fqr*krfsqrn*krygrw*lqkrsttrn*kircssyrpqpsrsnpcwlltslrlshcshc
l*ih*nrr*s*ssywcrrcqrrycrrrlkew*crygrinpissnvc*ilh*iptirsfrr
qryetnrrrrchqinrqespr*sr**ercccpikkeink*yflinsil**f*kkkkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSD740 (VSD740Q) /CSM/VS/VSD7-B/VSD740Q.Seq.d/ 1253 0.0
VSD380 (VSD380Q) /CSM/VS/VSD3-D/VSD380Q.Seq.d/ 1253 0.0
VSD312 (VSD312Q) /CSM/VS/VSD3-A/VSD312Q.Seq.d/ 1253 0.0
VFO616 (VFO616Q) /CSM/VF/VFO6-A/VFO616Q.Seq.d/ 1253 0.0
VFN666 (VFN666Q) /CSM/VF/VFN6-C/VFN666Q.Seq.d/ 1253 0.0
VFN474 (VFN474Q) /CSM/VF/VFN4-D/VFN474Q.Seq.d/ 1253 0.0
VFN376 (VFN376Q) /CSM/VF/VFN3-D/VFN376Q.Seq.d/ 1253 0.0
VFN329 (VFN329Q) /CSM/VF/VFN3-B/VFN329Q.Seq.d/ 1253 0.0
VFN318 (VFN318Q) /CSM/VF/VFN3-A/VFN318Q.Seq.d/ 1253 0.0
VFN184 (VFN184Q) /CSM/VF/VFN1-D/VFN184Q.Seq.d/ 1253 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(X55973) D. discoideum EF1-I gene for elongation factor 1 al... 1255 0.0 1
(AU284628) Dictyostelium discoideum gamete cDNA clone:FC-BF1... 1255 0.0 1
(AU284342) Dictyostelium discoideum gamete cDNA clone:FC-AN0... 1255 0.0 1
(AU264497) Dictyostelium discoideum vegetative cDNA clone:VS... 1255 0.0 1
(AU263935) Dictyostelium discoideum vegetative cDNA clone:VS... 1255 0.0 1
(AU263821) Dictyostelium discoideum vegetative cDNA clone:VS... 1255 0.0 1
(AU052275) Dictyostelium discoideum slug cDNA, clone SLA488. 1255 0.0 1
(AU052219) Dictyostelium discoideum slug cDNA, clone SLA265. 1255 0.0 1
(AU039993) Dictyostelium discoideum slug cDNA, clone SLH395. 1255 0.0 1
(AU039527) Dictyostelium discoideum slug cDNA, clone SLE701. 1255 0.0 1
dna update 2009. 2. 3
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

X55973_1(X55973|pid:none) D. discoideum EF1-I gene for elongatio... 389 e-107
X55972_1(X55972|pid:none) D. discoideum EF1-II gene for elongati... 389 e-107
(P18624) RecName: Full=Elongation factor 1-alpha; Short... 389 e-107
AY542532_1(AY542532|pid:none) Cladonema radiatum translation elo... 311 9e-84
(P41745) RecName: Full=Elongation factor 1-alpha; Short... 310 3e-83
AY643816_1(AY643816|pid:none) Lycogala epidendrum elongation fac... 308 8e-83
Y09023_1(Y09023|pid:none) G.cydonium mRNA for elongation factor ... 308 1e-82
AJ581004_1(AJ581004|pid:none) Axinella verrucosa mRNA for elonga... 307 2e-82
(Q00251) RecName: Full=Elongation factor 1-alpha; Short... 307 2e-82
AY582829_1(AY582829|pid:none) Acanthamoeba culbertsoni ef1a gene... 307 2e-82
protein update 2009. 6. 1
PSORT

psg: 0.89 gvh: 0.50 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.15 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
24.0 %: nuclear
12.0 %: mitochondrial
8.0 %: vacuolar
8.0 %: peroxisomal
4.0 %: endoplasmic reticulum

>> prediction for SLB439 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLB439Z
3' end seq.
>SLB439Z.Seq
----------AGATGTCTACAAGATCGGTGGTATCGGTACTGTTCCAGTAGGTCGTGTCG
AAACTGGTATCATTAAACCAGGTATGGTCGTCACCTTTGCCCCAGCTGGTCTCTCAACTG
AAGTCAAATCAGTCGAAATGCATCACGAACAACTCCCAGAAGCCCGTCCAGGTGACAATG
TAGGTTTCAACGTTAAAAACGTTTCAGTCAAAGAAATTAAAAGAGGTATGGTCGCTGGTG
ACTCCAAAAACGATCCACCACAAGAAACTGAAAAATTCGTTGCTCAAGTTATCGTCCTCA
ACCATCCAGGTCAAATCCATGCTGGTTACTCACCAGTCTTAGATTGTCACACTGCTCACA
TTGCCTGTAAATTCACTGAAATCGTCGATAAAGTTGATCGTCGTACTGGTGCCGTCGTTG
CCAAAGAAGGTACTGCCGCCGTCGTCTTAAAGAATGGTGATGCCGCTATGGTCGAATTAA
CCCCATCTCGTCCAATGTGTGTTGAATCCTTCACTGAATACCCACCATTAGGTCGTTTCG
CCGTCAGAGATATGAGACAAACCGTCGCCGTCGGTGTCATCAAATCAACCGTCAAGAAAG
CCCCAGGTAAAGCCGGTGATAAGAAAGGTGCTGCTGCCCCATCAAAAAAGAAATAAATAA
ATAATATTTCTTAATAAATAGCATTTTATAATAATTTTAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 709
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -