SLB394 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

SLB394
Library	SL (Link to library)
Clone ID	SLB394 (Link to dictyBase)
Atlas ID	-
NBRP ID	G24120
dictyBase ID	DDB0184167BP
Link to Contig	Contig-U13982-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/SL/SLB3-D/SLB394Q.Seq.d/
Representative seq. ID	SLB394E (Link to Original site)
Representative DNA sequence	>SLB394 (SLB394Q) /CSM/SL/SLB3-D/SLB394Q.Seq.d/ GACAGATACAAATCCAAAAGAACCTTCAAATGTTGAATCTATCATTACAACATCAGAAGT AACACCTTCACCACCACCATCAACAACAACTTCAACTACCACAAACGCAACTACAACTAT CACAACTTCACAACCACAAGCAAATATAATTGGAGGTAAAAGAAGTAGAAAAGATGATGA GATTATATCAATTCAAGAAGCATTGAATGATCAATTAGAAGAGGAAAAGAATTTATTAGA GGAAGCAAAAGAACAAGAACAAGAGGATTGGGGTGATGAAAGTATTTGTACTTTTGATAA AGGTTATATTAATCAATCTGTATTTGCTTGTAAAACTTGTCAATTATCAAATGATAAATT ATTTGGATTTTGCTATGGATGTTCAATGCATTGTCATTTATATCATGACGTTTATGAGTT ATTTAATAAAAGGAATTTTAGATGTGATTGTGGTACAAAAATTCAAGAACCTAATAATAG TTTTAAATGTCAATTATCAGGAATTCTTAAAGAAGATGATAATAATAATGTTAATAATAT TAATAATAGTAATAATACAACTACAACTACAACAACAACAACAACAACAACAACAACAAC AAATAATAACCATTTAAATGATATTGATATTGGATCATATGATAAAAGTCAAATTTTAAA TGAAAGAAATCATTATAATCATAATTTTAAAGGAAAATATTGTTATTGTGATAGTCCTTA TGACTATAAAGAAGATATGATTCAATGTATATTTTGTGAAGATTGGTTCCACGAGAATTG TTTAAAATTAAATTCAAACGTTACAGATATTCCAAGTCCTGGTGAATTTTCAGATTTAAT TTGTGCTGATTGTTTATCAAAAAATCAATTCCTTTTATTATATCCACAGATTAGATGTTA TATTGAAAATGATCATATCATAATTGGTGATAATAATAATAATAACAATAATAGTAATAA TAGTAATAGTATTTGTAAAGTTGAAGGTGGAGTTATAACTCCAAACAAAAAGTATGATTT ATTTTGTAAAGAGTTATGGAAAGATGAGTTATGTAGTTGTTTAAAGTGTAAAGAAATTTA TAAAGATAAAAAAGTTGAGTTCTTATTTGAAAAAGATGAAAACTCTTTAAAAAAAAAGAA TAAAACTGTAGATGAAAATCTTGATAATAAACCTGTTAATGTTTTTGAAATGGGTCAAGA TGTATTTAGTAAAACATTACCACCAACTCAACAAAGAGCTCTAATAGAAGGTTTTAGTGA TATGAAAGAGAAATTAAAAGAGTTATTCTCAAAGAAATTAGATAAAAATCAAGTAATTAC AAAACAAGATATTCAATCATTTTTTGTGGACTTGAATGTAAATAAAAAATTTAAGAAATA AA
sequence update	2002. 8. 2
Translated Amino Acid sequence	TDTNPKEPSNVESIITTSEVTPSPPPSTTTSTTTNATTTITTSQPQANIIGGKRSRKDDE IISIQEALNDQLEEEKNLLEEAKEQEQEDWGDESICTFDKGYINQSVFACKTCQLSNDKL FGFCYGCSMHCHLYHDVYELFNKRNFRCDCGTKIQEPNNSFKCQLSGILKEDDNNNVNNI NNSNNTTTTTTTTTTTTTTTNNNHLNDIDIGSYDKSQILNERNHYNHNFKGKYCYCDSPY DYKEDMIQCIFCEDWFHENCLKLNSNVTDIPSPGEFSDLICADCLSKNQFLLLYPQIRCY IENDHIIIGDNNNNNNNSNNSNSICKVEGGVITPNKKYDLFCKELWKDELCSCLKCKEIY KDKKVEFLFEKDENSLKKKNKTVDENLDNKPVNVFEMGQDVFSKTLPPTQQRALIEGFSD MKEKLKELFSKKLDKNQVITKQDIQSFFVDLNVNKKFKK*
Translated Amino Acid sequence (All Frames)	Frame A: drykskrtfkciyhynirsntftttinnnfnyhkrnynyhnftttskynwrkkkr* dyinsrsiesirrgkefirgskrtrtrglgkylyfrlysiciclnlsiiki iwillwmfnalsfisrlvikefmlwyknsrt*fmsiirnsrr*cy ***ynynynnnnnnnnnnkpfkyywii*ksnfkkkslsfrkilllsl lrrydsmyilrlvprelfkikfkryryskswifrfnlclfikksipfiistdml yksyhnw***q****ylsrwsynskqkvfilrvmervmlfkvrnl rksvlikrklfkkkencrks*tccfngsrcinittnstkssnrrf* yereikrvilkeirkssnyktrysiifcgleckkiei Frame B: TDTNPKEPSNVESIITTSEVTPSPPPSTTTSTTTNATTTITTSQPQANIIGGKRSRKDDE IISIQEALNDQLEEEKNLLEEAKEQEQEDWGDESICTFDKGYINQSVFACKTCQLSNDKL FGFCYGCSMHCHLYHDVYELFNKRNFRCDCGTKIQEPNNSFKCQLSGILKEDDNNNVNNI NNSNNTTTTTTTTTTTTTTTNNNHLNDIDIGSYDKSQILNERNHYNHNFKGKYCYCDSPY DYKEDMIQCIFCEDWFHENCLKLNSNVTDIPSPGEFSDLICADCLSKNQFLLLYPQIRCY IENDHIIIGDNNNNNNNSNNSNSICKVEGGVITPNKKYDLFCKELWKDELCSCLKCKEIY KDKKVEFLFEKDENSLKKKNKTVDENLDNKPVNVFEMGQDVFSKTLPPTQQRALIEGFSD MKEKLKELFSKKLDKNQVITKQDIQSFFVDLNVNKKFKK Frame C: qiqiqknlqmlnlslqhqkhlhhhhqqqlqlpqtqlqlsqlhnhkqilevkevekmmr lyqfkkhminkrkriyrkqknknkrigvmkvfvllikvilinlyllvklvnyqminy ldfamdvqciviyimtfmsylikgildvivvqkfknliivlnvnyqeflkkmiiimliil iiviiqlqlqqqqqqqqqqqiitimilildhmikvkfmkeiiiiiilkenivivivlm tikkifnvyfvkigstrivniqtlqifqvlvnfqifvlivyqkinsfyyihrldvi lkmiislviiiiitiiviivivfvklkvellqtksmiyfvksygkmsyvvvsvkkfi kikklssylkkmktlkkriklmkiliinllmflkwvkmylvkhyhqlnkel*kvlvi krnksysqrnikiklqnkifnhflwtm*iknlrnk
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value SLB394 (SLB394Q) /CSM/SL/SLB3-D/SLB394Q.Seq.d/ 1027 0.0 AFN777 (AFN777Q) /CSM/AF/AFN7-D/AFN777Q.Seq.d/ 1027 0.0 AHP251 (AHP251Q) /CSM/AH/AHP2-C/AHP251Q.Seq.d/ 452 e-126 SSM879 (SSM879Q) /CSM/SS/SSM8-D/SSM879Q.Seq.d/ 46 0.001 SLB461 (SLB461Q) /CSM/SL/SLB4-C/SLB461Q.Seq.d/ 46 0.001 SFI822 (SFI822Q) /CSM/SF/SFI8-A/SFI822Q.Seq.d/ 46 0.001 AFM790 (AFM790Q) /CSM/AF/AFM7-D/AFM790Q.Seq.d/ 46 0.001 VSB313 (VSB313Q) /CSM/VS/VSB3-A/VSB313Q.Seq.d/ 44 0.006 VHJ158 (VHJ158Q) /CSM/VH/VHJ1-C/VHJ158Q.Seq.d/ 44 0.006 VHO759 (VHO759Q) /CSM/VH/VHO7-C/VHO759Q.Seq.d/ 42 0.022
own update	2009. 4. 4
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC116986\|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 34 7e-17 30 AC116957\|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 36 3e-10 25 AC116977\|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence. 38 1e-09 22 AB063522\|AB063522.2 Wigglesworthia brevipalpis DNA, complete genome, section 2/2. 38 2e-09 23 AF063866\|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome. 38 4e-09 18 AC115577\|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 38 5e-09 21 AC116984\|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 42 2e-08 27 AC116305\|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 36 2e-08 23 AC117072\|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence. 38 3e-08 17 AL035476\|AL035476.7 Plasmodium falciparum MAL4P3. 36 3e-08 20
dna update	2003.11.18
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q54DV0) RecName: Full=Putative E3 ubiquitin-protein ligase ubr7... 706 0.0 (Q09329) RecName: Full=Protein mlo2; &AL121863_6(AL121863\|pid:n... 143 2e-32 BT083338_1(BT083338\|pid:none) Anoplopoma fimbria clone afim-evh-... 130 1e-28 EF145632_1(EF145632\|pid:none) Populus trichocarpa clone WS0112_C... 124 1e-26 AB493695_1(AB493695\|pid:none) Arabidopsis thaliana At4g23860 mRN... 117 1e-24 FN313996_1(FN313996\|pid:none) Schistosoma japonicum isolate Anhu... 117 1e-24 AL078468_3(AL078468\|pid:none) Arabidopsis thaliana DNA chromosom... 117 1e-24 AP005450_3(AP005450\|pid:none) Oryza sativa Japonica Group genomi... 115 3e-24 AC142526_17(AC142526\|pid:none) Medicago truncatula clone mth2-34... 114 6e-24 BT043029_1(BT043029\|pid:none) Zea mays full-length cDNA clone ZM... 114 8e-24
protein update	2009. 7. 4
PSORT	psg: 0.75 gvh: 0.34 alm: 0.46 top: 0.53 tms: 0.00 mit: 0.24 mip: 0.00 nuc: 0.06 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 52.0 %: nuclear 28.0 %: cytoplasmic 8.0 %: mitochondrial 8.0 %: peroxisomal 4.0 %: vacuolar >> prediction for SLB394 is nuc
5' end seq. ID	SLB394F
5' end seq.	>SLB394F.Seq GACAGATACAAATCCAAAAGAACCTTCAAATGTTGAATCTATCATTACAACATCAGAAGT AACACCTTCACCACCACCATCAACAACAACTTCAACTACCACAAACGCAACTACAACTAT CACAACTTCACAACCACAAGCAAATATAATTGGAGGTAAAAGAAGTAGAAAAGATGATGA GATTATATCAATTCAAGAAGCATTGAATGATCAATTAGAAGAGGAAAAGAATTTATTAGA GGAAGCAAAAGAACAAGAACAAGAGGATTGGGGTGATGAAAGTATTTGTACTTTTGATAA AGGTTATATTAATCAATCTGTATTTGCTTGTAAAACTTGTCAATTATCAAATGATAAATT ATTTGGATTTTGCTATGGATGTTCAATGCATTGTCATTTATATCATGACGTTTATGAGTT ATTTAATAAAAGGAATTTTAGATGTGATTGTGGTACAAAAATTCAAGAACCTAATAATAG TTTTAAATGTCAATTATCAGGAATTCTTAAAGAAGATGATAATAATAATGTTAATAATAT TAATAATAGTAATAATACAACTACAACTACAACAACAACAACAACAACAACAACAACAAC AAATAATAACCATTTAAATGATATTGATATTGGATCATATGATAAAAGTCAAATTTTAAA TGAAAGAAATCATTATAATCATAATTTTAAAGGAAAATATTGTTATTGTGATAGTCCTTA TGACTATAAAGAAGATATGATTCAATGTATATTTTGTGAAGATTGGTTCCACGAGAATTG TTTAAAATTAAATTCAAACGTTACAGATATTCCAAGTCCTGGTGAATTTTCAGATTTAAT TTGTGCTGATTGTTTATCAAAAAATCAATTCCTTTTATTATATCCACAGATTAGATGTTA TATTGAAAATGATCATATCATAATTGGTGATAATAATAATAATAACAATAATAGTAATAA TAGTAATAGTATTTGTAAAGTTGAAGGTGGAGTTATAACTCCAAACAAAAAGTATGATTT ATTTTGTAAAGAGNNNNNNNNNN
Length of 5' end seq.	1043
3' end seq. ID	SLB394Z
3' end seq.	>SLB394Z.Seq ----------ATAATAGTAATAGTATTTGTAAAGTTGAAGGTGGAGTTATAACTCCAAAC AAAAAGTATGATTTATTTTGTAAAGAGTTATGGAAAGATGAGTTATGTAGTTGTTTAAAG TGTAAAGAAATTTATAAAGATAAAAAAGTTGAGTTCTTATTTGAAAAAGATGAAAACTCT TTAAAAAAAAAGAATAAAACTGTAGATGAAAATCTTGATAATAAACCTGTTAATGTTTTT GAAATGGGTCAAGATGTATTTAGTAAAACATTACCACCAACTCAACAAAGAGCTCTAATA GAAGGTTTTAGTGATATGAAAGAGAAATTAAAAGAGTTATTCTCAAAGAAATTAGATAAA AATCAAGTAATTACAAAACAAGATATTCAATCATTTTTTGTGGACTTGAATGTAAATAAA AAATTTAAGAAATAAA
Length of 3' end seq.	426
Connected seq. ID	SLB394P
Connected seq.	>SLB394P.Seq GACAGATACAAATCCAAAAGAACCTTCAAATGTTGAATCTATCATTACAACATCAGAAGT AACACCTTCACCACCACCATCAACAACAACTTCAACTACCACAAACGCAACTACAACTAT CACAACTTCACAACCACAAGCAAATATAATTGGAGGTAAAAGAAGTAGAAAAGATGATGA GATTATATCAATTCAAGAAGCATTGAATGATCAATTAGAAGAGGAAAAGAATTTATTAGA GGAAGCAAAAGAACAAGAACAAGAGGATTGGGGTGATGAAAGTATTTGTACTTTTGATAA AGGTTATATTAATCAATCTGTATTTGCTTGTAAAACTTGTCAATTATCAAATGATAAATT ATTTGGATTTTGCTATGGATGTTCAATGCATTGTCATTTATATCATGACGTTTATGAGTT ATTTAATAAAAGGAATTTTAGATGTGATTGTGGTACAAAAATTCAAGAACCTAATAATAG TTTTAAATGTCAATTATCAGGAATTCTTAAAGAAGATGATAATAATAATGTTAATAATAT TAATAATAGTAATAATACAACTACAACTACAACAACAACAACAACAACAACAACAACAAC AAATAATAACCATTTAAATGATATTGATATTGGATCATATGATAAAAGTCAAATTTTAAA TGAAAGAAATCATTATAATCATAATTTTAAAGGAAAATATTGTTATTGTGATAGTCCTTA TGACTATAAAGAAGATATGATTCAATGTATATTTTGTGAAGATTGGTTCCACGAGAATTG TTTAAAATTAAATTCAAACGTTACAGATATTCCAAGTCCTGGTGAATTTTCAGATTTAAT TTGTGCTGATTGTTTATCAAAAAATCAATTCCTTTTATTATATCCACAGATTAGATGTTA TATTGAAAATGATCATATCATAATTGGTGATAATAATAATAATAACAATAATAGTAATAA TAGTAATAGTATTTGTAAAGTTGAAGGTGGAGTTATAACTCCAAACAAAAAGTATGATTT ATTTTGTAAAGAG----------ATAATAGTAATAGTATTTGTAAAGTTGAAGGTGGAGT TATAACTCCAAACAAAAAGTATGATTTATTTTGTAAAGAGTTATGGAAAGATGAGTTATG TAGTTGTTTAAAGTGTAAAGAAATTTATAAAGATAAAAAAGTTGAGTTCTTATTTGAAAA AGATGAAAACTCTTTAAAAAAAAAGAATAAAACTGTAGATGAAAATCTTGATAATAAACC TGTTAATGTTTTTGAAATGGGTCAAGATGTATTTAGTAAAACATTACCACCAACTCAACA AAGAGCTCTAATAGAAGGTTTTAGTGATATGAAAGAGAAATTAAAAGAGTTATTCTCAAA GAAATTAGATAAAAATCAAGTAATTACAAAACAAGATATTCAATCATTTTTTGTGGACTT GAATGTAAATAAAAAATTTAAGAAATAAA
Length of connected seq.	1459
Full length Seq ID	SLB394E
Full length Seq.	>SLB394E.Seq GACAGATACAAATCCAAAAGAACCTTCAAATGTTGAATCTATCATTACAACATCAGAAGT AACACCTTCACCACCACCATCAACAACAACTTCAACTACCACAAACGCAACTACAACTAT CACAACTTCACAACCACAAGCAAATATAATTGGAGGTAAAAGAAGTAGAAAAGATGATGA GATTATATCAATTCAAGAAGCATTGAATGATCAATTAGAAGAGGAAAAGAATTTATTAGA GGAAGCAAAAGAACAAGAACAAGAGGATTGGGGTGATGAAAGTATTTGTACTTTTGATAA AGGTTATATTAATCAATCTGTATTTGCTTGTAAAACTTGTCAATTATCAAATGATAAATT ATTTGGATTTTGCTATGGATGTTCAATGCATTGTCATTTATATCATGACGTTTATGAGTT ATTTAATAAAAGGAATTTTAGATGTGATTGTGGTACAAAAATTCAAGAACCTAATAATAG TTTTAAATGTCAATTATCAGGAATTCTTAAAGAAGATGATAATAATAATGTTAATAATAT TAATAATAGTAATAATACAACTACAACTACAACAACAACAACAACAACAACAACAACAAC AAATAATAACCATTTAAATGATATTGATATTGGATCATATGATAAAAGTCAAATTTTAAA TGAAAGAAATCATTATAATCATAATTTTAAAGGAAAATATTGTTATTGTGATAGTCCTTA TGACTATAAAGAAGATATGATTCAATGTATATTTTGTGAAGATTGGTTCCACGAGAATTG TTTAAAATTAAATTCAAACGTTACAGATATTCCAAGTCCTGGTGAATTTTCAGATTTAAT TTGTGCTGATTGTTTATCAAAAAATCAATTCCTTTTATTATATCCACAGATTAGATGTTA TATTGAAAATGATCATATCATAATTGGTGATAATAATAATAATAACAATAATAGTAATAA TAGTAATAGTATTTGTAAAGTTGAAGGTGGAGTTATAACTCCAAACAAAAAGTATGATTT ATTTTGTAAAGAGTTATGGAAAGATGAGTTATGTAGTTGTTTAAAGTGTAAAGAAATTTA TAAAGATAAAAAAGTTGAGTTCTTATTTGAAAAAGATGAAAACTCTTTAAAAAAAAAGAA TAAAACTGTAGATGAAAATCTTGATAATAAACCTGTTAATGTTTTTGAAATGGGTCAAGA TGTATTTAGTAAAACATTACCACCAACTCAACAAAGAGCTCTAATAGAAGGTTTTAGTGA TATGAAAGAGAAATTAAAAGAGTTATTCTCAAAGAAATTAGATAAAAATCAAGTAATTAC AAAACAAGATATTCAATCATTTTTTGTGGACTTGAATGTAAATAAAAAATTTAAGAAATA AA
Length of full length seq.	1382

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas