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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLB275
Library SL
(Link to library)
Clone ID SLB275
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16513-1
Original site URL
Representative seq. ID SLB275Z
(Link to Original site)
Representative DNA sequence 
>SLB275 (SLB275Q) /CSM/SL/SLB2-D/SLB275Q.Seq.d/
XXXXXXXXXXTGAATTCCTTGGTAACACCTCCGCCAATGAAAAAGATGTTGTCATCGCCA
AAATTGATTGCGATGCTGCTGATAACAAAGCCATCTGCTCCAAATATGGTGTCACTGGTT
TCCCAACACTCAAATGGTTCGGTAAACAAAGCAAAGACGGTGAAAAATATGAACAAGGTC
GTGATCTTGATACTTTCATCAACTACATCAACAAACAAGCTGGTGTTAACCGTGTCAAAG
GTGGTAAACTCGCTGTTGGTGCTGGTCGTGTTGAACAACTCGATACTATTGCCACTGAAT
TCATCGCTGCCGCTGCTGAAGTCCGTAAGGAACTCGTCAAGAAAGCTCAAACCGTCGTTG
ATTCTCTCCCAGAAGAATTAAGAACTGAAGGTTCATACTACGTCAAAGTCATGAAAACCA
TTGCTGAAAAATCAATCGATTTTGTAACCACTGAAATCGCTCGTATCACCAAATTAGTCT
CTGGTTCAATGTCTGGAAAGAAAGCTGATGAATTTGCCAAGAAACTCAATATTTTAGAAT
CTTTCAAATCAAAATAAATTAAATTTAATTTAGAAAATAAAAAAAAAAAAAAAAAAAAA
sequence update 1998. 3.28
Translated Amino Acid sequence 
---EFLGNTSANEKDVVIAKIDCDAADNKAICSKYGVTGFPTLKWFGKQSKDGEKYEQGR
DLDTFINYINKQAGVNRVKGGKLAVGAGRVEQLDTIATEFIAAAAEVRKELVKKAQTVVD
SLPEELRTEGSYYVKVMKTIAEKSIDFVTTEIARITKLVSGSMSGKKADEFAKKLNILES
FKSK*ikfnlenkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---EFLGNTSANEKDVVIAKIDCDAADNKAICSKYGVTGFPTLKWFGKQSKDGEKYEQGR
DLDTFINYINKQAGVNRVKGGKLAVGAGRVEQLDTIATEFIAAAAEVRKELVKKAQTVVD
SLPEELRTEGSYYVKVMKTIAEKSIDFVTTEIARITKLVSGSMSGKKADEFAKKLNILES
FKSK*ikfnlenkkkkkkk


Frame B:
---nslvtpppmkkmlsspkliamllitkpsapnmvslvsqhsngsvnkaktvknmnkvv
ililssttstnklvltvskvvnsllvlvvlnnsillplnsslpllksvrnssrklkpsli
lsqkn*elkvhttsks*kpllknqsil*plkslvspn*slvqclerklmnlprnsif*nl
snqnklnli*kikkkkkk


Frame C:
---ipw*hlrq*krcchrqn*lrcc**qshllqiwchwfpntqmvr*tkqrr*ki*trs*
s*yfhqlhqqtswc*pcqrw*trcwcwsc*ttryych*ihrcrc*sp*gtrqessnrr*f
sprrikn*rfilrqshenhc*kinrfcnh*nrsyhqislwfnvwkes**icqetqyfrif
qikin*i*frk*kkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLB275 (SLB275Q) /CSM/SL/SLB2-D/SLB275Q.Seq.d/                       1126   0.0
VFN233 (VFN233Q) /CSM/VF/VFN2-B/VFN233Q.Seq.d/                       1110   0.0
VFN206 (VFN206Q) /CSM/VF/VFN2-A/VFN206Q.Seq.d/                       1110   0.0
VFM578 (VFM578Q) /CSM/VF/VFM5-D/VFM578Q.Seq.d/                       1110   0.0
VFM537 (VFM537Q) /CSM/VF/VFM5-B/VFM537Q.Seq.d/                       1110   0.0
VFM151 (VFM151Q) /CSM/VF/VFM1-C/VFM151Q.Seq.d/                       1110   0.0
VFL584 (VFL584Q) /CSM/VF/VFL5-D/VFL584Q.Seq.d/                       1110   0.0
VFL481 (VFL481Q) /CSM/VF/VFL4-D/VFL481Q.Seq.d/                       1110   0.0
VFL139 (VFL139Q) /CSM/VF/VFL1-B/VFL139Q.Seq.d/                       1110   0.0
VFI769 (VFI769Q) /CSM/VF/VFI7-C/VFI769Q.Seq.d/                       1110   0.0
own update 2001.12. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU033656) Dictyostelium discoideum slug cDNA, clone SLB275.     1061   0.0    1
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...  1045   0.0    1
(AU035020) Dictyostelium discoideum slug cDNA, clone SLE505.     1045   0.0    1
(AU034838) Dictyostelium discoideum slug cDNA, clone SLE567.     1045   0.0    1
(AU034824) Dictyostelium discoideum slug cDNA, clone SLE550.     1045   0.0    1
(AU034445) Dictyostelium discoideum slug cDNA, clone SLC885.     1045   0.0    1
(AU033592) Dictyostelium discoideum slug cDNA, clone SLB208.     1045   0.0    1
(BJ436145) Dictyostelium discoideum cDNA clone:ddv30j06, 3' ...  1045   0.0    1
(BJ435983) Dictyostelium discoideum cDNA clone:ddv29a12, 3' ...  1045   0.0    1
(BJ435573) Dictyostelium discoideum cDNA clone:ddv27f15, 3' ...  1045   0.0    1
dna update 2009. 2. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q86IA3) RecName: Full=Protein disulfide-isomerase 1;          S...   323   2e-87
AF019112_1(AF019112|pid:none) Dictyostelium discoideum protein d...   321   1e-86
AE017341_67(AE017341|pid:none) Cryptococcus neoformans var. neof...   130   3e-29
EF086125_1(EF086125|pid:none) Picea sitchensis clone WS0285_I21 ...   122   6e-27
EU284948_1(EU284948|pid:none) TSA: Elaeis guineensis EgEfMPOB001...   120   2e-26
DQ222488_1(DQ222488|pid:none) Solanum tuberosum clone 098B03 dis...   118   1e-25
(O22263) RecName: Full=Probable protein disulfide-isomerase A6; ...   118   1e-25
AK317714_1(AK317714|pid:none) Arabidopsis thaliana AT2G47470 mRN...   118   1e-25
AY730725_1(AY730725|pid:none) Entamoeba histolytica protein disu...   117   2e-25
AC087425_4(AC087425|pid:none) Oryza sativa (japonica cultivar-gr...   116   4e-25
protein update 2009. 6. 1
PSORT 

 psg: 0.75  gvh: 0.28  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.13  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 20.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: mitochondrial

>> prediction for SLB275 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLB275Z
3' end seq. 
>SLB275Z.Seq
----------TGAATTCCTTGGTAACACCTCCGCCAATGAAAAAGATGTTGTCATCGCCA
AAATTGATTGCGATGCTGCTGATAACAAAGCCATCTGCTCCAAATATGGTGTCACTGGTT
TCCCAACACTCAAATGGTTCGGTAAACAAAGCAAAGACGGTGAAAAATATGAACAAGGTC
GTGATCTTGATACTTTCATCAACTACATCAACAAACAAGCTGGTGTTAACCGTGTCAAAG
GTGGTAAACTCGCTGTTGGTGCTGGTCGTGTTGAACAACTCGATACTATTGCCACTGAAT
TCATCGCTGCCGCTGCTGAAGTCCGTAAGGAACTCGTCAAGAAAGCTCAAACCGTCGTTG
ATTCTCTCCCAGAAGAATTAAGAACTGAAGGTTCATACTACGTCAAAGTCATGAAAACCA
TTGCTGAAAAATCAATCGATTTTGTAACCACTGAAATCGCTCGTATCACCAAATTAGTCT
CTGGTTCAATGTCTGGAAAGAAAGCTGATGAATTTGCCAAGAAACTCAATATTTTAGAAT
CTTTCAAATCAAAATAAATTAAATTTAATTTAGAAAATAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 589
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -