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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLB259
Library SL
(Link to library)
Clone ID SLB259
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16475-1
Original site URL
Representative seq. ID SLB259Z
(Link to Original site)
Representative DNA sequence 
>SLB259 (SLB259Q) /CSM/SL/SLB2-C/SLB259Q.Seq.d/
XXXXXXXXXXCGCCAATAGCCAAGTTGGTCAATGCACTCAAACTCCAACTGCTAAATGTG
ATTTGGGTGATAAATGTATGGTTTACAGTTGTACCTTGGAAGGTGGTTGTAATGCAACTC
AACGTGTTTGTCCAAACTCTGGTGCTTGTAAAATTGGTTATTGTGAACCTGGTTTCGGTT
GTAAATTAAAGGATAGAGTTTGTTCTTCCGATTGGTATTGTATTGAAGCTCAATGTGATG
CAAAATATGGTTGCATTCAATTCGATAGAAGATGTGCTCCTGATAATAGTAAATGTCAAG
AAGGTGTCTGTGTAAACAATACTGCTATCGGTAAAAATGATGGAAAATGTATTTCTGAAG
ATTATGATCCAAAACCATTTGTTTGTCAAAAAGCTGCTTTAGTTTCAACTGCTGTTATTG
CAAGTGTTGTTGTAGTTGGTGCTGTTGTTTTAGGTGCTGCTATATTTGCGGGTAAGAAAG
GTTATGATGCTTGGAAAACAAGTCAAGGAAATGTTATGGCAGCTTCACAAGCTAATCCAT
TATATACTCAATCAAGTAATGGAGGTGAAAATCCACTCTATAACTCACCAACATAAATCC
AAAAACCTAATTTATAAAATCATGTATTGTTTTAATTTTAATTTTTTTCCAGTCTTATTT
TCATAAAAATGCGCCTCAAATATATAATGTACAA
sequence update 1998. 3.28
Translated Amino Acid sequence 
---ANSQVGQCTQTPTAKCDLGDKCMVYSCTLEGGCNATQRVCPNSGACKIGYCEPGFGC
KLKDRVCSSDWYCIEAQCDAKYGCIQFDRRCAPDNSKCQEGVCVNNTAIGKNDGKCISED
YDPKPFVCQKAALVSTAVIASVVVVGAVVLGAAIFAGKKGYDAWKTSQGNVMAASQANPL
YTQSSNGGENPLYNSPT*iqkpnl*nhvlf*f*ffsslifikmrlkyimy
Translated Amino Acid sequence (All Frames) 
Frame A:
---ANSQVGQCTQTPTAKCDLGDKCMVYSCTLEGGCNATQRVCPNSGACKIGYCEPGFGC
KLKDRVCSSDWYCIEAQCDAKYGCIQFDRRCAPDNSKCQEGVCVNNTAIGKNDGKCISED
YDPKPFVCQKAALVSTAVIASVVVVGAVVLGAAIFAGKKGYDAWKTSQGNVMAASQANPL
YTQSSNGGENPLYNSPT*iqkpnl*nhvlf*f*ffsslifikmrlkyimy


Frame B:
---piaklvnalklqllnviwvinvwftvvpwkvvvmqlnvfvqtlvlvklvivnlvsvv
n*riefvlpigivlklnvmqnmvafnsiedvlliivnvkkvsv*tillsvkmmenvflki
miqnhlfvkkll*fqllllqvll*lvllf*vllylrvrkvmmlgkqvkemlwqlhklihy
ilnqvmevkihsithqhksknliykimycfnfnffpvlfs*kcasni*ct


Frame C:
---q*pswsmhsnsnc*m*fg**myglqlylgrwl*cnstclsklwcl*nwll*twfrl*
ikg*slffrlvly*ssm*ckiwlhsir*kmcs****msrrclckqycyr*k*wkmyf*rl
*skticlskscfsfnccyckcccswcccfrccyicg*erl*clenksrkcygsfts*sii
ysik*wr*kstl*ltninpkt*fikscivliliffqsyfhknapqiynvq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLB259 (SLB259Q) /CSM/SL/SLB2-C/SLB259Q.Seq.d/                       1227   0.0
SHL876 (SHL876Q) /CSM/SH/SHL8-D/SHL876Q.Seq.d/                       1227   0.0
SHG135 (SHG135Q) /CSM/SH/SHG1-B/SHG135Q.Seq.d/                       1227   0.0
SHF677 (SHF677Q) /CSM/SH/SHF6-D/SHF677Q.Seq.d/                       1227   0.0
SFI733 (SFI733Q) /CSM/SF/SFI7-B/SFI733Q.Seq.d/                       1227   0.0
SFG433 (SFG433Q) /CSM/SF/SFG4-B/SFG433Q.Seq.d/                       1227   0.0
SFE864 (SFE864Q) /CSM/SF/SFE8-C/SFE864Q.Seq.d/                       1227   0.0
SFE223 (SFE223Q) /CSM/SF/SFE2-A/SFE223Q.Seq.d/                       1227   0.0
CHR774 (CHR774Q) /CSM/CH/CHR7-D/CHR774Q.Seq.d/                       1227   0.0
CHR444 (CHR444Q) /CSM/CH/CHR4-B/CHR444Q.Seq.d/                       1227   0.0
own update 2003. 6.10
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU033641) Dictyostelium discoideum slug cDNA, clone SLB259.     1227   0.0    2
(BJ409628) Dictyostelium discoideum cDNA clone:dds42a24, 3' ...  1227   0.0    2
(BJ409047) Dictyostelium discoideum cDNA clone:dds47h20, 3' ...  1227   0.0    2
(BJ406741) Dictyostelium discoideum cDNA clone:dds36e09, 3' ...  1227   0.0    2
(BJ406607) Dictyostelium discoideum cDNA clone:dds35i20, 3' ...  1227   0.0    2
(BJ402775) Dictyostelium discoideum cDNA clone:dds18b09, 3' ...  1227   0.0    2
(BJ400431) Dictyostelium discoideum cDNA clone:dds13b10, 3' ...  1227   0.0    1
(BJ400195) Dictyostelium discoideum cDNA clone:dds9m06, 3' e...  1227   0.0    2
(BJ398039) Dictyostelium discoideum cDNA clone:dds10p16, 3' ...  1227   0.0    2
(BJ386302) Dictyostelium discoideum cDNA clone:ddc57d19, 3' ...  1227   0.0    2
dna update 2009. 2. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54P69) RecName: Full=Protein psiM; Flags: Precursor;                363   2e-99
(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor;  &AC11695...   169   5e-41
(Q557E9) RecName: Full=Protein psiG; Flags: Precursor;  &AC11568...   162   9e-39
(Q94494) RecName: Full=Protein psiH; Flags: Precursor;  &U67940_...   154   2e-36
(Q54VS2) RecName: Full=Protein psiP; Flags: Precursor;                149   1e-34
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                121   2e-26
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                118   2e-25
S44208(S44208) extracellular matrix protein B - Dictyostelium mi...    59   2e-07
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso...    54   3e-06
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos...    52   2e-05
protein update 2009. 6. 1
PSORT 

 psg: 0.75  gvh: 0.57  alm: 0.16  top: 0.73  tms: 0.07  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SLB259 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLB259Z
3' end seq. 
>SLB259Z.Seq
----------CGCCAATAGCCAAGTTGGTCAATGCACTCAAACTCCAACTGCTAAATGTG
ATTTGGGTGATAAATGTATGGTTTACAGTTGTACCTTGGAAGGTGGTTGTAATGCAACTC
AACGTGTTTGTCCAAACTCTGGTGCTTGTAAAATTGGTTATTGTGAACCTGGTTTCGGTT
GTAAATTAAAGGATAGAGTTTGTTCTTCCGATTGGTATTGTATTGAAGCTCAATGTGATG
CAAAATATGGTTGCATTCAATTCGATAGAAGATGTGCTCCTGATAATAGTAAATGTCAAG
AAGGTGTCTGTGTAAACAATACTGCTATCGGTAAAAATGATGGAAAATGTATTTCTGAAG
ATTATGATCCAAAACCATTTGTTTGTCAAAAAGCTGCTTTAGTTTCAACTGCTGTTATTG
CAAGTGTTGTTGTAGTTGGTGCTGTTGTTTTAGGTGCTGCTATATTTGCGGGTAAGAAAG
GTTATGATGCTTGGAAAACAAGTCAAGGAAATGTTATGGCAGCTTCACAAGCTAATCCAT
TATATACTCAATCAAGTAATGGAGGTGAAAATCCACTCTATAACTCACCAACATAAATCC
AAAAACCTAATTTATAAAATCATGTATTGTTTTAATTTTAATTTTTTTCCAGTCTTATTT
TCATAAAAATGCGCCTCAAATATATAATGTACAA
Length of 3' end seq. 684
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -