SLB242
Library SL
(Link to library)
Clone ID SLB242
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SLB242E
(Link to Original site)
Representative DNA sequence
>SLB242 (SLB242Q) /CSM/SL/SLB2-B/SLB242Q.Seq.d/
ATCAAATCAAACCGCAGAAAAGGATGAATATGAAGATAAGATGAAAGCCTTAGAAGCAGT
TGTCAATCCAATCATGAGTAAACTCTATCAAGAAGGAGGTATGCCACAAGGTGGTGGTAT
GCCAGGTGGTATGTCAAATGATTCACCAAAGAGTTCAAACAACAAAGTAGACGAATTAGA
TTGACGGAATTTTTCAGAGGAAAACATCTCTATCAAATAGATTTCTTAAAAAATAATAAG
TTAGTAAAATCAATAAAGCTTCTCATATATAGTACACATTAA
sequence update 1998. 3.28
Translated Amino Acid sequence
SNQTAEKDEYEDKMKALEAVVNPIMSKLYQEGGMPQGGGMPGGMSNDSPKSSNNKVDELD
*rnfseenisik*is*kiis**nq*sfsyivhi


Translated Amino Acid sequence (All Frames)
Frame A:
iksnrrkg*i*r*deslrsscqsnhe*tlsrrryatrwwyarwyvk*ftkefkqqsrrir
lteffrgkhlyqidflknnklvksiklliysth*


Frame B:
SNQTAEKDEYEDKMKALEAVVNPIMSKLYQEGGMPQGGGMPGGMSNDSPKSSNNKVDELD
*rnfseenisik*is*kiis**nq*sfsyivhi


Frame C:
qikpqkrmnmkir*kp*kqlsiqs*vnsikkevchkvvvcqvvcqmihqrvqttk*tn*i
dgifqrktslsnrflkk**vskinkashi*ytl


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSA155 (VSA155Q) /CSM/VS/VSA1-C/VSA155Q.Seq.d/ 559 e-159
VHP266 (VHP266Q) /CSM/VH/VHP2-C/VHP266Q.Seq.d/ 559 e-159
SSK478 (SSK478Q) /CSM/SS/SSK4-D/SSK478Q.Seq.d/ 559 e-159
SSJ888 (SSJ888Q) /CSM/SS/SSJ8-D/SSJ888Q.Seq.d/ 559 e-159
SSF159 (SSF159Q) /CSM/SS/SSF1-C/SSF159Q.Seq.d/ 559 e-159
SSE694 (SSE694Q) /CSM/SS/SSE6-D/SSE694Q.Seq.d/ 559 e-159
SSE386 (SSE386Q) /CSM/SS/SSE3-D/SSE386Q.Seq.d/ 559 e-159
SSB749 (SSB749Q) /CSM/SS/SSB7-C/SSB749Q.Seq.d/ 559 e-159
SLI714 (SLI714Q) /CSM/SL/SLI7-A/SLI714Q.Seq.d/ 559 e-159
SLI245 (SLI245Q) /CSM/SL/SLI2-B/SLI245Q.Seq.d/ 559 e-159

own update 2002.12.10
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(X75263) D.discoideum (AX3) mRNA for heat shock cognate prot... 559 e-155 1
(AU284399) Dictyostelium discoideum gamete cDNA clone:FC-AS0... 559 e-155 1
(AU261314) Dictyostelium discoideum vegetative cDNA clone:VS... 559 e-155 1
(AU053467) Dictyostelium discoideum slug cDNA, clone SLI714. 559 e-155 1
(AU053255) Dictyostelium discoideum slug cDNA, clone SLI245. 559 e-155 1
(AU052489) Dictyostelium discoideum slug cDNA, clone SLD412. 559 e-155 1
(AU052200) Dictyostelium discoideum slug cDNA, clone SLA226. 559 e-155 1
(AU039449) Dictyostelium discoideum slug cDNA, clone SLH812. 559 e-155 1
(AU037867) Dictyostelium discoideum slug cDNA, clone SSE386. 559 e-155 1
(AU037311) Dictyostelium discoideum slug cDNA, clone SSB749. 559 e-155 1
dna update 2009. 2. 2
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P36415) RecName: Full=Heat shock cognate 70 kDa protein 1; ... 91 1e-17
S37394(S37394) dnaK-type molecular chaperone hsc70 - slime mold ... 91 1e-17
(P22953) RecName: Full=Heat shock cognate 70 kDa protein 1; ... 50 2e-05
S46302(S46302;S41402;JA0169;S36623) dnaK-type molecular chaperon... 50 2e-05
AY035123_1(AY035123|pid:none) Arabidopsis thaliana putative dnaK... 50 2e-05
X77199_1(X77199|pid:none) A.thaliana hsc70-1 gene. 50 2e-05
CU928174_28(CU928174|pid:none) Zygosaccharomyces rouxii strain C... 49 6e-05
(P24629) RecName: Full=Heat shock cognate 70 kDa protein 1; &FB... 49 7e-05
AY253326_1(AY253326|pid:none) Nicotiana tabacum heat shock prote... 49 7e-05
DQ675540_1(DQ675540|pid:none) Diaphorina citri clone WHDc0146 pu... 48 9e-05
protein update 2009. 7. 4
PSORT

psg: 0.75 gvh: 0.29 alm: 0.55 top: 0.53 tms: 0.00 mit: 0.25 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
36.0 %: cytoplasmic
8.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for SLB242 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLB242E
Full length Seq.
>SLB242E.Seq
ATCAAATCAAACCGCAGAAAAGGATGAATATGAAGATAAGATGAAAGCCTTAGAAGCAGT
TGTCAATCCAATCATGAGTAAACTCTATCAAGAAGGAGGTATGCCACAAGGTGGTGGTAT
GCCAGGTGGTATGTCAAATGATTCACCAAAGAGTTCAAACAACAAAGTAGACGAATTAGA
TTGACGGAATTTTTCAGAGGAAAACATCTCTATCAAATAGATTTCTTAAAAAATAATAAG
TTAGTAAAATCAATAAAGCTTCTCATATATAGTACACATTAA
Length of full length seq. 282