NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLB240
Library SL
(Link to library)
Clone ID SLB240
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U01115-1|Contig-U16357-1
Original site URL
Representative seq. ID SLB240P
(Link to Original site)
Representative DNA sequence 
>SLB240 (SLB240Q) /CSM/SL/SLB2-B/SLB240Q.Seq.d/
CAACAATATGAAACCTGAAGATGCAAACGCTGCCATCGATAATTCAAATGCCAATGCCAA
TAGCAATGTAAATGGNATACTATTCTTCACCAAGTTCAAATTATTCACATTCTCCAAGAT
CACCAACATCTTCATTGGCTGATTGAGCTACAACTGTTGATGAAGATCACCAACAACCAC
AACCACCACAACAACAGCAACCACCACAACAACACCAATCCTCACAACCGATGCAAGAAA
GTAAACCAATCCAAACTCACATACAACACTTAACTGCAAATTCAACTAGTCCACAACAAC
AACAACAACAACAACAACAACCACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAXXXXXXXXXXTAATAATAATAATAATAATAATAATAATTTAAACAAAAACAAA
ATATTTTTTCAAAAAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAATTAAAACTAAAAAA
AAAAAAAAAAAAAAAAAAAAAACAATAAACAAAACAAATATTATATGTACTCTAAA
sequence update 1999. 1.12
Translated Amino Acid sequence 
ti*nlkmqtlpsiiqmpmpiam*mxyysspssnyshsprsptsslad*ATTVDEDHQQPQ
PPQQQQPPQQHQSSQPMQESKPIQTHIQHLTANSTSPQQQQQQQQQPQQQQQQQQQQQQQ
Q---

---NNNNNNNNNLNKNKIFFQKI*kkkkkkkkiktkkkkkkkkktinktniictl
Translated Amino Acid sequence (All Frames) 
Frame A:
qqyet*rckrchr*fkcqcq*qckwxtilhqvqiihilqdhqhlhwlielqllmkitnnh
nhhnnsnhhnntnphnrckkvnqskltynt*lqiqlvhnnnnnnnnnhnnnnnnnnnnnn
nn---

---*********fkqkqnifsknlkkkkkkkkn*n*kkkkkkkknnkqnkyymysk

Frame B:
nnmkpedanaaidnsnanansnvngilfftkfklftfskitnifig*lsync**rspttt
tttttatttttpilttdark*tnpnshttlnckfn*sttttttttttttttttttttttt
tt---

---NNNNNNNNNLNKNKIFFQKI*kkkkkkkkiktkkkkkkkkktinktniictl

Frame C:
ti*nlkmqtlpsiiqmpmpiam*mxyysspssnyshsprsptsslad*ATTVDEDHQQPQ
PPQQQQPPQQHQSSQPMQESKPIQTHIQHLTANSTSPQQQQQQQQQPQQQQQQQQQQQQQ
Q---

---iiiiiiiii*tktkyffkkfkkkkkkkkklklkkkkkkkkkq*tkqilyvl*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLB240 (SLB240Q) /CSM/SL/SLB2-B/SLB240Q.Seq.d/                        325   4e-88
SLA450 (SLA450Q) /CSM/SL/SLA4-C/SLA450Q.Seq.d/                        315   4e-85
SHE221 (SHE221Q) /CSM/SH/SHE2-A/SHE221Q.Seq.d/                         38   0.13
SSJ396 (SSJ396Q) /CSM/SS/SSJ3-D/SSJ396Q.Seq.d/                         36   0.53
VSB507 (VSB507Q) /CSM/VS/VSB5-A/VSB507Q.Seq.d/                         34   2.1
VHN891 (VHN891Q) /CSM/VH/VHN8-D/VHN891Q.Seq.d/                         34   2.1
VFJ582 (VFJ582Q) /CSM/VF/VFJ5-D/VFJ582Q.Seq.d/                         34   2.1
SSL864 (SSL864Q) /CSM/SS/SSL8-C/SSL864Q.Seq.d/                         34   2.1
SSL513 (SSL513Q) /CSM/SS/SSL5-A/SSL513Q.Seq.d/                         34   2.1
SSK675 (SSK675Q) /CSM/SS/SSK6-D/SSK675Q.Seq.d/                         34   2.1
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU060723) Dictyostelium discoideum slug cDNA, clone SLB240.      325   e-115  2
(AU060154) Dictyostelium discoideum slug cDNA, clone SLA450.      180   e-109  3
(AU033623) Dictyostelium discoideum slug cDNA, clone SLB240.       68   4e-07  1
(EC057816) 37756 CK01 Drosophila melanogaster cDNA clone CK0...    44   0.41   2
(CO188518) EK040662.5prime Exelixis FlyTag CK01 pCDNA-SK+ Dr...    44   0.41   2
(CQ579432) Sequence 7190 from Patent WO0171042.                    44   1.0    2
(AC006265) Homo sapiens chromosome 17, clone hRPK.566_B_16, ...    42   1.1    3
(CQ579431) Sequence 7189 from Patent WO0171042.                    44   1.8    2
(AY122166) Drosophila melanogaster LD24507 full insert cDNA.       44   2.1    2
(AL021726) Drosophila melanogaster cosmid clone 171E4.             44   5.2    1
dna update 2009. 2. 1
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 276,137,589
protein update 2009. 6. 1
PSORT 

 psg: 0.75  gvh: 0.38  alm: 0.72  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 24.0 %: cytoplasmic
	 20.0 %: mitochondrial
	 12.0 %: cytoskeletal

>> prediction for SLB240 is nuc
5' end seq. ID SLB240F
5' end seq. 
>SLB240F.Seq
CAACAATATGAAACCTGAAGATGCAAACGCTGCCATCGATAATTCAAATGCCAATGCCAA
TAGCAATGTAAATGGNATACTATTCTTCACCAAGTTCAAATTATTCACATTCTCCAAGAT
CACCAACATCTTCATTGGCTGATTGAGCTACAACTGTTGATGAAGATCACCAACAACCAC
AACCACCACAACAACAGCAACCACCACAACAACACCAATCCTCACAACCGATGCAAGAAA
GTAAACCAATCCAAACTCACATACAACACTTAACTGCAAATTCAACTAGTCCACAACAAC
AACAACAACAACAACAACAACCACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACA----------
Length of 5' end seq. 367
3' end seq. ID SLB240Z
3' end seq. 
>SLB240Z.Seq
----------TAATAATAATAATAATAATAATAATAATTTAAACAAAAACAAAATATTTT
TTCAAAAAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAATTAAAACTAAAAAAAAAAAAA
AAAAAAAAAAAAAAACAATAAACAAAACAAATATTATATGTACTCTAAA
Length of 3' end seq. 159
Connected seq. ID SLB240P
Connected seq. 
>SLB240P.Seq
CAACAATATGAAACCTGAAGATGCAAACGCTGCCATCGATAATTCAAATGCCAATGCCAA
TAGCAATGTAAATGGNATACTATTCTTCACCAAGTTCAAATTATTCACATTCTCCAAGAT
CACCAACATCTTCATTGGCTGATTGAGCTACAACTGTTGATGAAGATCACCAACAACCAC
AACCACCACAACAACAGCAACCACCACAACAACACCAATCCTCACAACCGATGCAAGAAA
GTAAACCAATCCAAACTCACATACAACACTTAACTGCAAATTCAACTAGTCCACAACAAC
AACAACAACAACAACAACAACCACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACA----------TAATAATAATAATAATAATAATAATAATTTAAACAAAAACAAA
ATATTTTTTCAAAAAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAATTAAAACTAAAAAA
AAAAAAAAAAAAAAAAAAAAAACAATAAACAAAACAAATATTATATGTACTCTAAA
Length of connected seq. 526
Full length Seq ID -
Full length Seq. -
Length of full length seq. -