NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLB239
Library SL
(Link to library)
Clone ID SLB239
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SLB239Z
(Link to Original site)
Representative DNA sequence 
>SLB239 (SLB239Q) /CSM/SL/SLB2-B/SLB239Q.Seq.d/
XXXXXXXXXXTGCCATTCAAGCCGTCTTATCCTTATATGCCTCTGGTCGTACCACTGGTA
TTGTTATGGATTCAGGTGATGGTGTCTCCCACACTGTACCAATCTATGAAGGTTATGCCT
TACCACATGCCATCTTACGTTTAGATTTAGCTGGTCGTGATCTTACTGATTACATGATGA
AAATCTTAACTGAACGTGGTTACTCATTCACCACCACTGCTGAAAGAGAAATCGTCAGAG
ATATCAAAGAAAAATTAGCCTACGTCGCCCTCGACTTTGAAGCTGAAATGCAAACTGCTG
CCTCATCATCAGCCCTCGAAAAATCATACGAATTACCAGACGGTCAAGTCATCACCATTG
GTAACGAACGTTTCCGTTGTCCAGAAGCCCTCTTCCAACCATCATTCTTAGGTATGGAAT
CAGCTGGTATCCACGAAACCACCTACAACTCCATCATGAAATGTGATGTTGATATCCGTA
AAGATTTATACGGTAACGTCGTCTTATCCGGTGGTACAACTATGTTCCCAGGTATTGCTG
ATCGTATGAACAAAGAATTAACTGCTTTAGCCCCATCAACCATGAAAATTAAAATCATTG
CCCCACCAGAACGTAAATACTCTGTTTGGATTGGTGGATCTATCTTAGCTTCACTCTCAA
CTTTCCAACAAATGTGGATCTCCAAAGAAGAATATGACGAATCAGGTCCATCAATTGTCC
ACAGAAAATGTTTCTAAACAATTAATAAATATGTTGTATTTTATTTAAACTTATATTATA
sequence update 1998. 3.28
Translated Amino Acid sequence 
---AIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYMMK
ILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYELPDGQVITIG
NERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIAD
RMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVH
RKCF*tinkyvvfylnlyy
Translated Amino Acid sequence (All Frames) 
Frame A:
---AIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYMMK
ILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYELPDGQVITIG
NERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIAD
RMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVH
RKCF*tinkyvvfylnlyy


Frame B:
---pfkpsypymplvvplvllwiqvmvsptlyqsmkvmpyhmpsyv*i*lvvillit**k
s*lnvvthsppllkeksseiskkn*ptspstlklkckllphhqpsknhtnyqtvkssplv
tnvsvvqkpssnhhs*vwnqlvstkppttps*nvmlisvkiytvtssypvvqlcsqvlli
v*tkn*ll*phqp*klkslphqnvntlfglvdls*lhsqlsnkcgspkknmtnqvhqlst
envskqlinmlyfi*tyii


Frame C:
---hssrliliclwsyhwycygfr*wclphctnl*rlclttchltfrfsws*sy*lhden
ln*twllihhhc*krnrqryqrkislrrprl*s*nanccliisprkiiritrrsshhhw*
rtfplsrsplptiilrygiswyprnhlqlhhem*c*yp*rfir*rrlirwynyvpryc*s
yeqrincfspinhen*nhcptrt*ilcldwwiylsftlnfptnvdlqrri*rirsincpq
kmflnn**iccilfklil
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLB239 (SLB239Q) /CSM/SL/SLB2-B/SLB239Q.Seq.d/                       1526   0.0
SFG379 (SFG379Q) /CSM/SF/SFG3-D/SFG379Q.Seq.d/                       1516   0.0
VHA591 (VHA591Q) /CSM/VH/VHA5-D/VHA591Q.Seq.d/                       1511   0.0
VFD695 (VFD695Q) /CSM/VF/VFD6-D/VFD695Q.Seq.d/                       1511   0.0
VFM615 (VFM615Q) /CSM/VF/VFM6-A/VFM615Q.Seq.d/                       1509   0.0
SLB152 (SLB152Q) /CSM/SL/SLB1-C/SLB152Q.Seq.d/                       1507   0.0
VFI686 (VFI686Q) /CSM/VF/VFI6-D/VFI686Q.Seq.d/                       1499   0.0
SLH419 (SLH419Q) /CSM/SL/SLH4-A/SLH419Q.Seq.d/                       1499   0.0
VFE364 (VFE364Q) /CSM/VF/VFE3-C/VFE364Q.Seq.d/                       1495   0.0
VFE434 (VFE434Q) /CSM/VF/VFE4-B/VFE434Q.Seq.d/                       1491   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU033622) Dictyostelium discoideum slug cDNA, clone SLB239.     1526   0.0    1
(AU033545) Dictyostelium discoideum slug cDNA, clone SLB152.     1507   0.0    1
(AU040004) Dictyostelium discoideum slug cDNA, clone SLH419.     1499   0.0    1
(BJ430922) Dictyostelium discoideum cDNA clone:ddv9d10, 3' e...  1489   0.0    1
(BJ431912) Dictyostelium discoideum cDNA clone:ddv17c04, 3' ...  1475   0.0    1
(BJ400596) Dictyostelium discoideum cDNA clone:dds13n19, 3' ...  1473   0.0    1
(BJ430170) Dictyostelium discoideum cDNA clone:ddv6f11, 3' e...  1471   0.0    1
(BJ430819) Dictyostelium discoideum cDNA clone:ddv8m24, 3' e...  1469   0.0    1
(AU039434) Dictyostelium discoideum slug cDNA, clone SLH781.     1463   0.0    1
(BJ435209) Dictyostelium discoideum cDNA clone:ddv26n07, 3' ...  1463   0.0    1
dna update 2009. 2. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54H30) RecName: Full=Major actin; AltName: Full=Actin-1; AltNa...   479   e-134
X03282_1(X03282|pid:none) dictyostelium discoideum gene for acti...   478   e-133
B23412(B23412)actin 12 - slime mold (Dictyostelium discoideum)        478   e-133
ATDO(A93223;A92871;S67999;A03004)actin - slime mold (Dictyosteli...   475   e-133
(Q553U6) RecName: Full=Putative actin-22;  &AC116305_3(AC116305|...   475   e-133
(P02576) RecName: Full=Actin, plasmodial isoform;  &ATFY(A29044;...   474   e-132
(P07829) RecName: Full=Actin-3; AltName: Full=Actin-3-sub 1;          471   e-131
AF508263_1(AF508263|pid:none) Pyrocystis lunula actin mRNA, comp...   471   e-131
AY615868_1(AY615868|pid:none) Amastigomonas marina actin gene, p...   468   e-131
AY615872_1(AY615872|pid:none) Phalansterium solitarium clone B a...   467   e-130
protein update 2009. 6. 1
PSORT 

 psg: 0.88  gvh: 0.61  alm: 0.46  top: 0.43  tms: 0.00  mit: 0.30  mip: 0.10
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 24.0 %: nuclear
	 20.0 %: mitochondrial
	 16.0 %: extracellular, including cell wall
	 16.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: endoplasmic reticulum
	  4.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for SLB239 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLB239Z
3' end seq. 
>SLB239Z.Seq
----------TGCCATTCAAGCCGTCTTATCCTTATATGCCTCTGGTCGTACCACTGGTA
TTGTTATGGATTCAGGTGATGGTGTCTCCCACACTGTACCAATCTATGAAGGTTATGCCT
TACCACATGCCATCTTACGTTTAGATTTAGCTGGTCGTGATCTTACTGATTACATGATGA
AAATCTTAACTGAACGTGGTTACTCATTCACCACCACTGCTGAAAGAGAAATCGTCAGAG
ATATCAAAGAAAAATTAGCCTACGTCGCCCTCGACTTTGAAGCTGAAATGCAAACTGCTG
CCTCATCATCAGCCCTCGAAAAATCATACGAATTACCAGACGGTCAAGTCATCACCATTG
GTAACGAACGTTTCCGTTGTCCAGAAGCCCTCTTCCAACCATCATTCTTAGGTATGGAAT
CAGCTGGTATCCACGAAACCACCTACAACTCCATCATGAAATGTGATGTTGATATCCGTA
AAGATTTATACGGTAACGTCGTCTTATCCGGTGGTACAACTATGTTCCCAGGTATTGCTG
ATCGTATGAACAAAGAATTAACTGCTTTAGCCCCATCAACCATGAAAATTAAAATCATTG
CCCCACCAGAACGTAAATACTCTGTTTGGATTGGTGGATCTATCTTAGCTTCACTCTCAA
CTTTCCAACAAATGTGGATCTCCAAAGAAGAATATGACGAATCAGGTCCATCAATTGTCC
ACAGAAAATGTTTCTAAACAATTAATAAATATGTTGTATTTTATTTAAACTTATATTATA
Length of 3' end seq. 770
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -