SLB233
Library SL
(Link to library)
Clone ID SLB233
Atlas ID
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16290-1
Original site URL
Representative seq. ID SLB233P
(Link to Original site)
Representative DNA sequence
>SLB233 (SLB233Q) /CSM/SL/SLB2-B/SLB233Q.Seq.d/
GTCAAGATTGGAAATCAATGTCAATGGGACAATATCTTAAAAAGATTGATCCGGAATTAA
GTAGATCTACCTTTGTTTTCACTAAATTCCATCATACAGTACGTGGTTTCAGTAGTACTC
GTGATATTAATAAATACTTGAGTGGTACAGTGCCTGATATTAAAGGGTTCTTTGTGACCT
TACCAAATCATCAAGTACGTGCAAGCTATTCAGAAGCAAATCGTTTCCAAGAGAAAATCT
ATCAAGCTCATAAGAGGGATATGCATGCTTTGGAACAACTTCAATATGATAAAAGATATG
AACGTACAATTGGTGTGGCACCATTGAGAAGATACATTTTAAATATCGTTTGGAAATCCT
ATCAAGATACAATTCCACGTATTCTCAAACATTTAAGATCAAAACGTCAAACTGCTGAAG
CAACACTCAATGAATTACAAAAACAATCCTCATCATTGGATAGCACTAAACTTCGTTCAA
TCGCATCCAATTACACTGTCACCTTTTTACAAATCACTGAGAAACTCCTTAGTGGTACAA
GCGAGGGTAATCCATCAGCAAATGGTCAAACTTTGGACGAGGAGAAATCTCAACAAGGTG
ATTGTGGTGAATGGGTTGACGCATACAAAGAGGCAATCTACATTGATCCTGAAGAATGGA
ACATTCCATATTGGTCAAGTAAATTATATGGTGGTCAXXXXXXXXXXATAATATTAACAG
CGGCGGCAATAATGGCATCAACATCAATGATCGTTTATCAAATACTGATATGGATAGTTT
AGATCAATATCCATTCTTTACTCATCATGTAAAGAATCTGTATTATGATTTCGTTCATAG
AGCTGCCAAAGGTTGTAAAGAGAAATGTATGGACGAATTCTATTCTTCAAGAACTATCTA
TTGGGAATTAACTGAACATCCAGATAGTTCATTACCAAGTATTAGAAATGATCATCATGA
AACTAAAACTGCTGTTTGTCAATTGGCTACAAAATTATTTGATTCCATTCGTCAAAGAAT
CACTAAAAATGTTTTATTAAAGTTATACAATTTCTTTTTGGTACCAATGCAAACTGACCT
TTGGAATGAAATTCAAGCTCAAATCACTTGTCTCTCAAATGAACAATTGGAACAACTCTT
TGAAGTTCAAGCAACTCGTGAACAATTAAAACAAGAAGAAAAGAAACAACAACAAATTTT
AGAAAAATATTCTCAAATTGATGAGCAATTTTTAAAAGCTGCTTCATTATTTTGTAGACC
ATTATCTAATCCAACTCCATCTGCTTAAAAATAAAATTATAAATAAATAAATAAATAAAA
AAAAAATTAAAAAAAATT
sequence update 1999. 1.12
Translated Amino Acid sequence
QDWKSMSMGQYLKKIDPELSRSTFVFTKFHHTVRGFSSTRDINKYLSGTVPDIKGFFVTL
PNHQVRASYSEANRFQEKIYQAHKRDMHALEQLQYDKRYERTIGVAPLRRYILNIVWKSY
QDTIPRILKHLRSKRQTAEATLNELQKQSSSLDSTKLRSIASNYTVTFLQITEKLLSGTS
EGNPSANGQTLDEEKSQQGDCGEWVDAYKEAIYIDPEEWNIPYWSSKLYGG---

---NINSGGNNGININDRLSNTDMDSLDQYPFFTHHVKNLYYDFVHRAAKGCKEKCMDEF
YSSRTIYWELTEHPDSSLPSIRNDHHETKTAVCQLATKLFDSIRQRITKNVLLKLYNFFL
VPMQTDLWNEIQAQITCLSNEQLEQLFEVQATREQLKQEEKKQQQILEKYSQIDEQFLKA
ASLFCRPLSNPTPSA*k*nyk*ink*kkn*kk


Translated Amino Acid sequence (All Frames)
Frame A:
vkignqcqwdnilkrlirn*vdlplfslnsiiqyvvsvvlvilint*vvqclilkgsl*p
yqiikyvqaiqkqivskrksiklirgicmlwnnfnmikdmnvqlvwhh*edtf*isfgnp
ikiqfhvfsni*dqnvkllkqhsmnyknnphhwialnfvqshpitlspfykslrnslvvq
arvihqqmvklwtrrnlnkvivvnglthtkrqstlilkngtfhigqvnymvv---

---iiltaaaimastsmivyqiliwiv*inihsllim*ricimisfielpkvvkrnvwtn
silqelsign*lniqivhyqvlemiimklkllfvnwlqnylipfvkeslkmfy*sytisf
wyqckltfgmkfklkslvsqmnnwnnslkfkqlvnn*nkkkrnnnkf*knilklmsnf*k
llhyfvdhyliqlhllknkiink*inkkkikkn

Frame B:
srleinvngtis*kd*sgik*iylcfh*ipsystwfq*ys*y**ilewysa*y*rvlcdl
tkssstcklfrsksfprenlsss*egyacfgttsi**ki*tynwcgtiekihfkyrleil
srynstysqtfkiktsnc*sntq*itktiliig*h*tsfnriqlhchlftnh*etp*wyk
rg*siskwsnfgrgeistr*lw*mg*riqrgnlh*s*rmehsilvk*iiwws---

---*y*qrrq*whqhq*sfiky*yg*frsisilyssckesvl*frs*scqrl*remygri
lffknyllgin*tsr*fitky*k*ss*n*ncclsigykii*fhssknh*kcfikviqflf
gtnan*ple*nsssnhlslk*tigttl*sssns*tiktrrketttnfrkifsn**aifks
cfiil*tii*snsiclkikl*ink*ikkklkki

Frame C:
QDWKSMSMGQYLKKIDPELSRSTFVFTKFHHTVRGFSSTRDINKYLSGTVPDIKGFFVTL
PNHQVRASYSEANRFQEKIYQAHKRDMHALEQLQYDKRYERTIGVAPLRRYILNIVWKSY
QDTIPRILKHLRSKRQTAEATLNELQKQSSSLDSTKLRSIASNYTVTFLQITEKLLSGTS
EGNPSANGQTLDEEKSQQGDCGEWVDAYKEAIYIDPEEWNIPYWSSKLYGG---

---NINSGGNNGININDRLSNTDMDSLDQYPFFTHHVKNLYYDFVHRAAKGCKEKCMDEF
YSSRTIYWELTEHPDSSLPSIRNDHHETKTAVCQLATKLFDSIRQRITKNVLLKLYNFFL
VPMQTDLWNEIQAQITCLSNEQLEQLFEVQATREQLKQEEKKQQQILEKYSQIDEQFLKA
ASLFCRPLSNPTPSA*k*nyk*ink*kkn*kk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLB233 (SLB233Q) /CSM/SL/SLB2-B/SLB233Q.Seq.d/ 2486 0.0
VHI820 (VHI820Q) /CSM/VH/VHI8-A/VHI820Q.Seq.d/ 1136 0.0
SHA511 (SHA511Q) /CSM/SH/SHA5-A/SHA511Q.Seq.d/ 1136 0.0
CHN790 (CHN790Q) /CSM/CH/CHN7-D/CHN790Q.Seq.d/ 1136 0.0
CHF430 (CHF430Q) /CSM/CH/CHF4-B/CHF430Q.Seq.d/ 1136 0.0
AFN584 (AFN584Q) /CSM/AF/AFN5-D/AFN584Q.Seq.d/ 1136 0.0
AFA833 (AFA833Q) /CSM/AF/AFA8-B/AFA833Q.Seq.d/ 1136 0.0
AHR457 (AHR457Q) /CSM/AH/AHR4-C/AHR457Q.Seq.d/ 1134 0.0
VHP620 (VHP620Q) /CSM/VH/VHP6-A/VHP620Q.Seq.d/ 1130 0.0
VHA558 (VHA558Q) /CSM/VH/VHA5-C/VHA558Q.Seq.d/ 1130 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU060722) Dictyostelium discoideum slug cDNA, clone SLB233. 1382 0.0 1
(AU033616) Dictyostelium discoideum slug cDNA, clone SLB233. 1146 0.0 1
(BJ441861) Dictyostelium discoideum cDNA clone:ddv48h06, 3' ... 1138 0.0 1
(BJ403408) Dictyostelium discoideum cDNA clone:dds25e03, 3' ... 1138 0.0 1
(BJ378648) Dictyostelium discoideum cDNA clone:ddc32l08, 3' ... 1138 0.0 1
(BJ369232) Dictyostelium discoideum cDNA clone:ddc49d23, 5' ... 1138 0.0 1
(BJ345787) Dictyostelium discoideum cDNA clone:dda28g21, 3' ... 1138 0.0 1
(BJ340470) Dictyostelium discoideum cDNA clone:dda2b10, 3' e... 1138 0.0 1
(BJ358018) Dictyostelium discoideum cDNA clone:dda65b16, 3' ... 1134 0.0 1
(BJ446235) Dictyostelium discoideum cDNA clone:ddv62g06, 3' ... 1130 0.0 1
dna update 2009. 1.31
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AY212885_1(AY212885|pid:none) Arabidopsis thaliana dynamin-like ... 90 2e-16
AC116982_36(AC116982|pid:none) Dictyostelium discoideum chromoso... 86 3e-15
AB426138_1(AB426138|pid:none) Physcomitrella patens PpDRP5B-2 ge... 82 4e-14
BT066817_1(BT066817|pid:none) Zea mays full-length cDNA clone ZM... 74 9e-12
AK072318_1(AK072318|pid:none) Oryza sativa Japonica Group cDNA c... 74 9e-12
AC186755_23(AC186755|pid:none) Musa balbisiana clone MBP_91N22, ... 71 7e-11
AM483765_2(AM483765|pid:none) Vitis vinifera contig VV78X210202.... 70 2e-10
BT062745_1(BT062745|pid:none) Zea mays full-length cDNA clone ZM... 67 1e-09
BT033550_1(BT033550|pid:none) Zea mays full-length cDNA clone ZM... 66 3e-09
AB094119_1(AB094119|pid:none) Cyanidioschyzon merolae Cmdnm2 gen... 63 3e-08
protein update 2009. 6. 1
PSORT

psg: 0.83 gvh: 0.43 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.15 mip: 0.07
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
36.0 %: cytoplasmic
8.0 %: cytoskeletal
8.0 %: vacuolar
4.0 %: mitochondrial

>> prediction for SLB233 is nuc

5' end seq. ID SLB233F
5' end seq.
>SLB233F.Seq
GTCAAGATTGGAAATCAATGTCAATGGGACAATATCTTAAAAAGATTGATCCGGAATTAA
GTAGATCTACCTTTGTTTTCACTAAATTCCATCATACAGTACGTGGTTTCAGTAGTACTC
GTGATATTAATAAATACTTGAGTGGTACAGTGCCTGATATTAAAGGGTTCTTTGTGACCT
TACCAAATCATCAAGTACGTGCAAGCTATTCAGAAGCAAATCGTTTCCAAGAGAAAATCT
ATCAAGCTCATAAGAGGGATATGCATGCTTTGGAACAACTTCAATATGATAAAAGATATG
AACGTACAATTGGTGTGGCACCATTGAGAAGATACATTTTAAATATCGTTTGGAAATCCT
ATCAAGATACAATTCCACGTATTCTCAAACATTTAAGATCAAAACGTCAAACTGCTGAAG
CAACACTCAATGAATTACAAAAACAATCCTCATCATTGGATAGCACTAAACTTCGTTCAA
TCGCATCCAATTACACTGTCACCTTTTTACAAATCACTGAGAAACTCCTTAGTGGTACAA
GCGAGGGTAATCCATCAGCAAATGGTCAAACTTTGGACGAGGAGAAATCTCAACAAGGTG
ATTGTGGTGAATGGGTTGACGCATACAAAGAGGCAATCTACATTGATCCTGAAGAATGGA
ACATTCCATATTGGTCAAGTAAATTATATGGTGGTCA----------
Length of 5' end seq. 697
3' end seq. ID SLB233Z
3' end seq.
>SLB233Z.Seq
----------ATAATATTAACAGCGGCGGCAATAATGGCATCAACATCAATGATCGTTTA
TCAAATACTGATATGGATAGTTTAGATCAATATCCATTCTTTACTCATCATGTAAAGAAT
CTGTATTATGATTTCGTTCATAGAGCTGCCAAAGGTTGTAAAGAGAAATGTATGGACGAA
TTCTATTCTTCAAGAACTATCTATTGGGAATTAACTGAACATCCAGATAGTTCATTACCA
AGTATTAGAAATGATCATCATGAAACTAAAACTGCTGTTTGTCAATTGGCTACAAAATTA
TTTGATTCCATTCGTCAAAGAATCACTAAAAATGTTTTATTAAAGTTATACAATTTCTTT
TTGGTACCAATGCAAACTGACCTTTGGAATGAAATTCAAGCTCAAATCACTTGTCTCTCA
AATGAACAATTGGAACAACTCTTTGAAGTTCAAGCAACTCGTGAACAATTAAAACAAGAA
GAAAAGAAACAACAACAAATTTTAGAAAAATATTCTCAAATTGATGAGCAATTTTTAAAA
GCTGCTTCATTATTTTGTAGACCATTATCTAATCCAACTCCATCTGCTTAAAAATAAAAT
TATAAATAAATAAATAAATAAAAAAAAAATTAAAAAAAATT
Length of 3' end seq. 631
Connected seq. ID SLB233P
Connected seq.
>SLB233P.Seq
GTCAAGATTGGAAATCAATGTCAATGGGACAATATCTTAAAAAGATTGATCCGGAATTAA
GTAGATCTACCTTTGTTTTCACTAAATTCCATCATACAGTACGTGGTTTCAGTAGTACTC
GTGATATTAATAAATACTTGAGTGGTACAGTGCCTGATATTAAAGGGTTCTTTGTGACCT
TACCAAATCATCAAGTACGTGCAAGCTATTCAGAAGCAAATCGTTTCCAAGAGAAAATCT
ATCAAGCTCATAAGAGGGATATGCATGCTTTGGAACAACTTCAATATGATAAAAGATATG
AACGTACAATTGGTGTGGCACCATTGAGAAGATACATTTTAAATATCGTTTGGAAATCCT
ATCAAGATACAATTCCACGTATTCTCAAACATTTAAGATCAAAACGTCAAACTGCTGAAG
CAACACTCAATGAATTACAAAAACAATCCTCATCATTGGATAGCACTAAACTTCGTTCAA
TCGCATCCAATTACACTGTCACCTTTTTACAAATCACTGAGAAACTCCTTAGTGGTACAA
GCGAGGGTAATCCATCAGCAAATGGTCAAACTTTGGACGAGGAGAAATCTCAACAAGGTG
ATTGTGGTGAATGGGTTGACGCATACAAAGAGGCAATCTACATTGATCCTGAAGAATGGA
ACATTCCATATTGGTCAAGTAAATTATATGGTGGTCA----------ATAATATTAACAG
CGGCGGCAATAATGGCATCAACATCAATGATCGTTTATCAAATACTGATATGGATAGTTT
AGATCAATATCCATTCTTTACTCATCATGTAAAGAATCTGTATTATGATTTCGTTCATAG
AGCTGCCAAAGGTTGTAAAGAGAAATGTATGGACGAATTCTATTCTTCAAGAACTATCTA
TTGGGAATTAACTGAACATCCAGATAGTTCATTACCAAGTATTAGAAATGATCATCATGA
AACTAAAACTGCTGTTTGTCAATTGGCTACAAAATTATTTGATTCCATTCGTCAAAGAAT
CACTAAAAATGTTTTATTAAAGTTATACAATTTCTTTTTGGTACCAATGCAAACTGACCT
TTGGAATGAAATTCAAGCTCAAATCACTTGTCTCTCAAATGAACAATTGGAACAACTCTT
TGAAGTTCAAGCAACTCGTGAACAATTAAAACAAGAAGAAAAGAAACAACAACAAATTTT
AGAAAAATATTCTCAAATTGATGAGCAATTTTTAAAAGCTGCTTCATTATTTTGTAGACC
ATTATCTAATCCAACTCCATCTGCTTAAAAATAAAATTATAAATAAATAAATAAATAAAA
AAAAAATTAAAAAAAATT
Length of connected seq. 1328
Full length Seq ID -
Full length Seq. -
Length of full length seq. -