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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLB232
Library SL
(Link to library)
Clone ID SLB232
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U16083-1
Original site URL
Representative seq. ID SLB232P
(Link to Original site)
Representative DNA sequence 
>SLB232 (SLB232Q) /CSM/SL/SLB2-B/SLB232Q.Seq.d/
ATATATTTAAAAATAATAAAATAAAAAAAAAAAAAAAAACTGTATTAAAAAAAAAAAAAA
TTGTAGTATATTAGTTTATTAAATAATTTGTAATTATAATAGAAATAAAAATAAAAATGA
ATAACGAAGAATATGATGAAAATAATAATAATGATGTTGGTGGTGAAGAATATTATGACA
ATTATAATTTTGAACCAATTTGGGTAAGAGCGTTATATGATTATGATGCAGCTGACGATA
CAGAGATTAGTTTCAAAGAGAATGATGTTATATGTATTACACAAGATTTTGAAGATGGTT
GGTGGAATGGTGATCTCAATGGTAATGTTGGTAGAGTTCCTGCAAATTATTTCGAATATT
TAAATCAAGATCAAACTGGTGATTATCAACAAGACAATTATGATGATGCTCAAGATCAAC
AACAACAACAATACTACGAAGGTGAAGATGGCCAACTATATTACACTGGTGAAGATGGTC
AACAATACTATTATGACGGTGGTCAAGAACAACAACAACAACAATACGATGGTGGTGATT
ATGATCAACAAAACCAACAAGAAGGATATGGCGACGATGGTGACGATGAAGAAGGAGGTA
ATATTGGTAGTGGTGGTGTTXXXXXXXXXXAAAGAATTGTTAAGACAAAAGAGAGAGGTC
TATAAAAAAGAGATGAAAGATCTTCAAGATAATTTAAAGAATCAAAATGATTGTAAAGAT
AGATTAGGTACCAGTGTAGAGTCATTAGAGAAGAAAAGAGATGAATTAGAGGACCATATT
AGATTATTGAAACTTTTGAAATTTATAAATTTAGAAATCATAAAGACAGAGATTGATATT
GATGTTGATTCCGACTCTTCAACTACATCACGTCAAACTGGTATTGCAATTACACAAGAT
TTAAAATCAATTAGAACTTTATTAGGTATTAAATCTTCAACATCCTCCTCTTCTTCATCA
TCATCATCCTCTGCAGTCGATGCACCAAAAAAACAATTTGATTTGAAATTGGAAGATATT
GAAAAGAAAGTAATTAATAATTTAAATTTATTAGATAGTTGTGATAATTTAAAGAAATCT
TTATTATTAAGTTTACAACTATTTCAAACAACTTATTTAAATGGAAATGGTATACCACCA
CCATCACCTACTAGAATTAAATCAATACCTACCAATTCAACAAATATACAGCAACAACAA
CAACAACAACAACAACCACCACTACCACCATCCTCTTCCTCCAATACTAATACTTCAAAT
AATTTTTATGTTTCAACATCATCCACACCATCAAATGCATTCTTTAGTGCACCTTCAACT
CCATTATCTGATAAAGATAAAAGAAAATCTGTTAAAGAAGCTA
sequence update 1999. 1.12
Translated Amino Acid sequence 
ifknnkikkkkktvlkkkkivvy*fik*FVIIIEIKIKMNNEEYDENNNNDVGGEEYYDN
YNFEPIWVRALYDYDAADDTEISFKENDVICITQDFEDGWWNGDLNGNVGRVPANYFEYL
NQDQTGDYQQDNYDDAQDQQQQQYYEGEDGQLYYTGEDGQQYYYDGGQEQQQQQYDGGDY
DQQNQQEGYGDDGDDEEGGNIGSGGV---

---KELLRQKREVYKKEMKDLQDNLKNQNDCKDRLGTSVESLEKKRDELEDHIRLLKLLK
FINLEIIKTEIDIDVDSDSSTTSRQTGIAITQDLKSIRTLLGIKSSTSSSSSSSSSSAVD
APKKQFDLKLEDIEKKVINNLNLLDSCDNLKKSLLLSLQLFQTTYLNGNGIPPPSPTRIK
SIPTNSTNIQQQQQQQQQPPLPPSSSSNTNTSNNFYVSTSSTPSNAFFSAPSTPLSDKDK
RKSVKEA
Translated Amino Acid sequence (All Frames) 
Frame A:
iylkiik*kkkkkly*kkkkl*yisllnnl*l**k*k*k*itknmmkiiimmlvvknimt
iiilnqfg*erymimmqltiqrlvskrmmlyvlhkilkmvggmvismvmlveflqiisni
*ikiklviinktimmmlkinnnnnttkvkmanyitlvkmvnntimtvvknnnnnntmvvi
minktnkkdmatmvtmkkevilvvvv---

---KELLRQKREVYKKEMKDLQDNLKNQNDCKDRLGTSVESLEKKRDELEDHIRLLKLLK
FINLEIIKTEIDIDVDSDSSTTSRQTGIAITQDLKSIRTLLGIKSSTSSSSSSSSSSAVD
APKKQFDLKLEDIEKKVINNLNLLDSCDNLKKSLLLSLQLFQTTYLNGNGIPPPSPTRIK
SIPTNSTNIQQQQQQQQQPPLPPSSSSNTNTSNNFYVSTSSTPSNAFFSAPSTPLSDKDK
RKSVKEA

Frame B:
yi*k**nkkkkkncikkkkncsilvy*iicnynrnknkne*rri**k****cww*ril*q
l*f*tnlgksvi*l*cs*ryrd*fqre*cymyytrf*rwlvew*sqw*cw*sscklfrif
ksrsnw*lstrql**csrsttttilrr*rwptilhw*rwstill*rwsrtttttirww*l
*stkptrriwrrw*r*rrr*yw*wwc---

---knc*dkrersikkr*kifkii*rikmivkid*vpv*sh*rrkemn*rtildy*nf*n
l*i*ks*rqrlilmliptlqlhhvklvlqlhki*nqlely*vlnlqhppllhhhhplqsm
hqknnli*nwkilkrk*lii*iy*ivvii*rnlyy*vynyfkqli*memvyhhhhlleln
qylpiqqiysnnnnnnnnhhyhhplppililqiifmfqhhphhqmhslvhlqlhylikik
enllkkl

Frame C:
ifknnkikkkkktvlkkkkivvy*fik*FVIIIEIKIKMNNEEYDENNNNDVGGEEYYDN
YNFEPIWVRALYDYDAADDTEISFKENDVICITQDFEDGWWNGDLNGNVGRVPANYFEYL
NQDQTGDYQQDNYDDAQDQQQQQYYEGEDGQLYYTGEDGQQYYYDGGQEQQQQQYDGGDY
DQQNQQEGYGDDGDDEEGGNIGSGGV---

---rivktkergl*krderssr*fkesk*l*r*iryqcrvireekr*irgpy*iietfei
ykfrnhkdrd*y*c*frlfnyitsnwycnytrfkin*nfiry*ifnillffiiiilcsrc
tkkti*feigry*kesn**fkfir*l**fkeifiikfttisnnlfkwkwytttity*n*i
ntyqfnkytattttttttttttilflqy*yfk*flcfniihtikcil*ctfnsii**r*k
kic*rs
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLB232 (SLB232Q) /CSM/SL/SLB2-B/SLB232Q.Seq.d/                       1221   0.0
AFM288 (AFM288Q) /CSM/AF/AFM2-D/AFM288Q.Seq.d/                        922   0.0
FC-BI08 (FC-BI08Q) /CSM/FC/FC-BI/FC-BI08Q.Seq.d/                      910   0.0
SLB630 (SLB630Q) /CSM/SL/SLB6-B/SLB630Q.Seq.d/                        751   0.0
SSJ103 (SSJ103Q) /CSM/SS/SSJ1-A/SSJ103Q.Seq.d/                        728   0.0
SLB628 (SLB628Q) /CSM/SL/SLB6-B/SLB628Q.Seq.d/                        595   e-169
SSH295 (SSH295Q) /CSM/SS/SSH2-D/SSH295Q.Seq.d/                        291   1e-77
AHL533 (AHL533Q) /CSM/AH/AHL5-B/AHL533Q.Seq.d/                        224   3e-57
VFD294 (VFD294Q) /CSM/VF/VFD2-D/VFD294Q.Seq.d/                         46   0.001
SLD495 (SLD495Q) /CSM/SL/SLD4-D/SLD495Q.Seq.d/                         46   0.001
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...   706   0.0    5
(AU033615) Dictyostelium discoideum slug cDNA, clone SLB232.      706   0.0    3
(AU284715) Dictyostelium discoideum gamete cDNA clone:FC-BI0...   545   0.0    3
(AU033934) Dictyostelium discoideum slug cDNA, clone SLB630.      392   0.0    3
(C90747) Dictyostelium discoideum slug cDNA, clone SSJ103.        392   0.0    3
(BJ347047) Dictyostelium discoideum cDNA clone:dda25o22, 3' ...   557   0.0    3
(AU033932) Dictyostelium discoideum slug cDNA, clone SLB628.      392   0.0    3
(AU060721) Dictyostelium discoideum slug cDNA, clone SLB232.      696   0.0    2
(AF487784) Dictyostelium discoideum prenyl cysteine carboxyl...   688   0.0    2
(BJ354624) Dictyostelium discoideum cDNA clone:dda54a09, 3' ...   224   2e-98  2
dna update 2009. 1.31
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116984_47(AC116984|pid:none) Dictyostelium discoideum chromoso...   272   2e-71
(P19706) RecName: Full=Myosin heavy chain IB; AltName: Full=Myos...    64   2e-08
MWAXIB(JQ0095;B34448)myosin heavy chain IB - Acanthamoeba castel...    64   2e-08
(Q6GM14) RecName: Full=Drebrin-like protein B;  &BC074277_1(BC07...    63   2e-08
CU633900_651(CU633900|pid:none) Podospora anserina genomic DNA c...    62   4e-08
BC095818_1(BC095818|pid:none) Danio rerio zgc:112450, mRNA (cDNA...    62   5e-08
AY812038_1(AY812038|pid:none) Schistosoma japonicum SJCHGC01829 ...    62   6e-08
AY812778_1(AY812778|pid:none) Schistosoma japonicum clone SJCHGC...    62   6e-08
(Q7ZXQ9) RecName: Full=Drebrin-like protein A;  &BC044296_1(BC04...    61   8e-08
AE017356_184(AE017356|pid:none) Cryptococcus neoformans var. neo...    61   1e-07
protein update 2009. 6. 1
PSORT 

 psg: 0.33  gvh: 0.19  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.14  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for SLB232 is cyt
5' end seq. ID SLB232F
5' end seq. 
>SLB232F.Seq
ATATATTTAAAAATAATAAAATAAAAAAAAAAAAAAAAACTGTATTAAAAAAAAAAAAAA
TTGTAGTATATTAGTTTATTAAATAATTTGTAATTATAATAGAAATAAAAATAAAAATGA
ATAACGAAGAATATGATGAAAATAATAATAATGATGTTGGTGGTGAAGAATATTATGACA
ATTATAATTTTGAACCAATTTGGGTAAGAGCGTTATATGATTATGATGCAGCTGACGATA
CAGAGATTAGTTTCAAAGAGAATGATGTTATATGTATTACACAAGATTTTGAAGATGGTT
GGTGGAATGGTGATCTCAATGGTAATGTTGGTAGAGTTCCTGCAAATTATTTCGAATATT
TAAATCAAGATCAAACTGGTGATTATCAACAAGACAATTATGATGATGCTCAAGATCAAC
AACAACAACAATACTACGAAGGTGAAGATGGCCAACTATATTACACTGGTGAAGATGGTC
AACAATACTATTATGACGGTGGTCAAGAACAACAACAACAACAATACGATGGTGGTGATT
ATGATCAACAAAACCAACAAGAAGGATATGGCGACGATGGTGACGATGAAGAAGGAGGTA
ATATTGGTAGTGGTGGTGTT----------
Length of 5' end seq. 620
3' end seq. ID SLB232Z
3' end seq. 
>SLB232Z.Seq
----------AAAGAATTGTTAAGACAAAAGAGAGAGGTCTATAAAAAAGAGATGAAAGA
TCTTCAAGATAATTTAAAGAATCAAAATGATTGTAAAGATAGATTAGGTACCAGTGTAGA
GTCATTAGAGAAGAAAAGAGATGAATTAGAGGACCATATTAGATTATTGAAACTTTTGAA
ATTTATAAATTTAGAAATCATAAAGACAGAGATTGATATTGATGTTGATTCCGACTCTTC
AACTACATCACGTCAAACTGGTATTGCAATTACACAAGATTTAAAATCAATTAGAACTTT
ATTAGGTATTAAATCTTCAACATCCTCCTCTTCTTCATCATCATCATCCTCTGCAGTCGA
TGCACCAAAAAAACAATTTGATTTGAAATTGGAAGATATTGAAAAGAAAGTAATTAATAA
TTTAAATTTATTAGATAGTTGTGATAATTTAAAGAAATCTTTATTATTAAGTTTACAACT
ATTTCAAACAACTTATTTAAATGGAAATGGTATACCACCACCATCACCTACTAGAATTAA
ATCAATACCTACCAATTCAACAAATATACAGCAACAACAACAACAACAACAACAACCACC
ACTACCACCATCCTCTTCCTCCAATACTAATACTTCAAATAATTTTTATGTTTCAACATC
ATCCACACCATCAAATGCATTCTTTAGTGCACCTTCAACTCCATTATCTGATAAAGATAA
AAGAAAATCTGTTAAAGAAGCTA
Length of 3' end seq. 733
Connected seq. ID SLB232P
Connected seq. 
>SLB232P.Seq
ATATATTTAAAAATAATAAAATAAAAAAAAAAAAAAAAACTGTATTAAAAAAAAAAAAAA
TTGTAGTATATTAGTTTATTAAATAATTTGTAATTATAATAGAAATAAAAATAAAAATGA
ATAACGAAGAATATGATGAAAATAATAATAATGATGTTGGTGGTGAAGAATATTATGACA
ATTATAATTTTGAACCAATTTGGGTAAGAGCGTTATATGATTATGATGCAGCTGACGATA
CAGAGATTAGTTTCAAAGAGAATGATGTTATATGTATTACACAAGATTTTGAAGATGGTT
GGTGGAATGGTGATCTCAATGGTAATGTTGGTAGAGTTCCTGCAAATTATTTCGAATATT
TAAATCAAGATCAAACTGGTGATTATCAACAAGACAATTATGATGATGCTCAAGATCAAC
AACAACAACAATACTACGAAGGTGAAGATGGCCAACTATATTACACTGGTGAAGATGGTC
AACAATACTATTATGACGGTGGTCAAGAACAACAACAACAACAATACGATGGTGGTGATT
ATGATCAACAAAACCAACAAGAAGGATATGGCGACGATGGTGACGATGAAGAAGGAGGTA
ATATTGGTAGTGGTGGTGTT----------AAAGAATTGTTAAGACAAAAGAGAGAGGTC
TATAAAAAAGAGATGAAAGATCTTCAAGATAATTTAAAGAATCAAAATGATTGTAAAGAT
AGATTAGGTACCAGTGTAGAGTCATTAGAGAAGAAAAGAGATGAATTAGAGGACCATATT
AGATTATTGAAACTTTTGAAATTTATAAATTTAGAAATCATAAAGACAGAGATTGATATT
GATGTTGATTCCGACTCTTCAACTACATCACGTCAAACTGGTATTGCAATTACACAAGAT
TTAAAATCAATTAGAACTTTATTAGGTATTAAATCTTCAACATCCTCCTCTTCTTCATCA
TCATCATCCTCTGCAGTCGATGCACCAAAAAAACAATTTGATTTGAAATTGGAAGATATT
GAAAAGAAAGTAATTAATAATTTAAATTTATTAGATAGTTGTGATAATTTAAAGAAATCT
TTATTATTAAGTTTACAACTATTTCAAACAACTTATTTAAATGGAAATGGTATACCACCA
CCATCACCTACTAGAATTAAATCAATACCTACCAATTCAACAAATATACAGCAACAACAA
CAACAACAACAACAACCACCACTACCACCATCCTCTTCCTCCAATACTAATACTTCAAAT
AATTTTTATGTTTCAACATCATCCACACCATCAAATGCATTCTTTAGTGCACCTTCAACT
CCATTATCTGATAAAGATAAAAGAAAATCTGTTAAAGAAGCTA
Length of connected seq. 1353
Full length Seq ID -
Full length Seq. -
Length of full length seq. -