SLB219
Library SL
(Link to library)
Clone ID SLB219
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15912-1
Original site URL
Representative seq. ID SLB219Z
(Link to Original site)
Representative DNA sequence
>SLB219 (SLB219Q) /CSM/SL/SLB2-A/SLB219Q.Seq.d/
XXXXXXXXXXTTTCGGTTCAACCGATGGTTCAAGCAATGATTGCTTATACTTTGAAACCA
ATGGTTTGGTCATCACAACCATTGATGTTCAATCTGTAGAACCAGTCGATCAACGTACTC
TTGATTCTTTACAAAAATCTGTTCAATTAGCCATTGAAATTACCACCAAATCACAAGAAG
CCACTGCTCGTCAAGAAGCTGAACGTTTAGAACAAATGGCTCGTGGTGAACTTGAACGTC
AAAAGATTATCGATGAAGCCAAGAACGAAGAATCTCGTTCCAAATTGGTCCAATTACAGG
CTCAATCAGCTGCTGTCGAATCAACTGGTCAAGCTGTTGCTGAAGCTCGTGCTCGTGCTG
AAGCCGCCATCATTGAAGCTGAAAGTGAAATCAAACAAGCTCGTCTCTCAACCAGAGCCA
TTGAAATTGAAGCTCTCTCTGAAATTGAAAATCTTAAAGCCAAACATATTGTTGAAATCC
AACACATCAAATCACTCAACAATCTCGAATTAATTAAAGCCAAAGAAAGTGCTACCATCG
AAACTACCAAATTCGAAAACTATGTTGAAGCCCTCGGTTCCGATACTATCAAATCAATCG
CCCAAGCTCCAGAAGAAACCAAGGCTAAATTATTAGCTGGTTTGGGTCTCAAATCATTCA
TGATTACTGATGGTAAATCACCACTCAATCTTTTCGATACTGCCAATGGTTTAATTGCTG
ATGCTCAAAGATCAGAAGTCGATGAAGAATAAAATTTTTAGTAATCACAG
sequence update 1998. 3.28
Translated Amino Acid sequence
---FGSTDGSSNDCLYFETNGLVITTIDVQSVEPVDQRTLDSLQKSVQLAIEITTKSQEA
TARQEAERLEQMARGELERQKIIDEAKNEESRSKLVQLQAQSAAVESTGQAVAEARARAE
AAIIEAESEIKQARLSTRAIEIEALSEIENLKAKHIVEIQHIKSLNNLELIKAKESATIE
TTKFENYVEALGSDTIKSIAQAPEETKAKLLAGLGLKSFMITDGKSPLNLFDTANGLIAD
AQRSEVDEE*nf**sq


Translated Amino Acid sequence (All Frames)
Frame A:
---FGSTDGSSNDCLYFETNGLVITTIDVQSVEPVDQRTLDSLQKSVQLAIEITTKSQEA
TARQEAERLEQMARGELERQKIIDEAKNEESRSKLVQLQAQSAAVESTGQAVAEARARAE
AAIIEAESEIKQARLSTRAIEIEALSEIENLKAKHIVEIQHIKSLNNLELIKAKESATIE
TTKFENYVEALGSDTIKSIAQAPEETKAKLLAGLGLKSFMITDGKSPLNLFDTANGLIAD
AQRSEVDEE*nf**sq


Frame B:
---svqpmvqamiaytlkpmvwssqplmfnl*nqsinvllilyknlfn*plklppnhkkp
llvkklnv*nkwlvvnlnvkrlsmkprtknlvpnwsnyrlnqllsnqlvklllklvlvlk
ppslklkvksnklvsqpeplklklslklkilkpnillksntsnhstisn*lkpkkvlpsk
lpnsktmlkpsvpilsnqspklqkkprlny*lvwvsnhs*llmvnhhsifsilpmv*llm
lkdqksmknkifsnh


Frame C:
---rfnrwfkq*llil*nqwfghhnh*csicrtsrstys*fftkicsish*nyhqitrsh
cssrs*tfrtngsw*t*tskdyr*sqerrisfqigpitgsisccrinwsscc*sscsc*s
rhh*s*k*nqtssslnqsh*n*ssl*n*ks*sqtyc*npthqitqqsrin*sqrkcyhrn
yqirklc*sprfryyqinrpssrrnqg*iiswfgsqiihdy*w*ittqsfrycqwfnc*c
skirsr*rikflvit


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLB219 (SLB219Q) /CSM/SL/SLB2-A/SLB219Q.Seq.d/ 1507 0.0
VHJ686 (VHJ686Q) /CSM/VH/VHJ6-D/VHJ686Q.Seq.d/ 1435 0.0
AHL591 (AHL591Q) /CSM/AH/AHL5-D/AHL591Q.Seq.d/ 1425 0.0
SHL153 (SHL153Q) /CSM/SH/SHL1-C/SHL153Q.Seq.d/ 1421 0.0
AFK544 (AFK544Q) /CSM/AF/AFK5-B/AFK544Q.Seq.d/ 1421 0.0
AHL354 (AHL354Q) /CSM/AH/AHL3-C/AHL354Q.Seq.d/ 1415 0.0
VHI718 (VHI718Q) /CSM/VH/VHI7-A/VHI718Q.Seq.d/ 1403 0.0
VHI266 (VHI266Q) /CSM/VH/VHI2-C/VHI266Q.Seq.d/ 1400 0.0
AHC287 (AHC287Q) /CSM/AH/AHC2-D/AHC287Q.Seq.d/ 1364 0.0
VHM426 (VHM426Q) /CSM/VH/VHM4-B/VHM426Q.Seq.d/ 1334 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU033602) Dictyostelium discoideum slug cDNA, clone SLB219. 1507 0.0 1
(Z37109) D.discoideum mRNA for major vault protein B. 1455 0.0 1
(BJ442761) Dictyostelium discoideum cDNA clone:ddv50k22, 3' ... 1435 0.0 1
(BJ354803) Dictyostelium discoideum cDNA clone:dda54e23, 3' ... 1425 0.0 1
(BJ441691) Dictyostelium discoideum cDNA clone:ddv47c18, 3' ... 1400 0.0 1
(BJ441840) Dictyostelium discoideum cDNA clone:ddv48d05, 3' ... 1396 0.0 2
(BJ354446) Dictyostelium discoideum cDNA clone:dda53l13, 3' ... 1388 0.0 2
(BJ408678) Dictyostelium discoideum cDNA clone:dds46i13, 3' ... 1364 0.0 2
(BJ444109) Dictyostelium discoideum cDNA clone:ddv55d08, 3' ... 1334 0.0 1
(BJ349261) Dictyostelium discoideum cDNA clone:dda35m22, 3' ... 1324 0.0 2
dna update 2009. 1.31
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54659) RecName: Full=Major vault protein beta; Short=... 401 e-110
(Q6PF69) RecName: Full=Major vault protein; Short=MVP; ... 194 3e-48
(Q62667) RecName: Full=Major vault protein; Short=MVP; ... 193 6e-48
AK167899_1(AK167899|pid:none) Mus musculus TIB-55 BB88 cDNA, RIK... 192 7e-48
AK088046_1(AK088046|pid:none) Mus musculus 2 days neonate thymus... 192 7e-48
(Q9EQK5) RecName: Full=Major vault protein; Short=MVP; ... 192 7e-48
AC116668_48(AC116668|pid:none) Trypanosoma brucei chromosome 5 c... 192 1e-47
(Q90405) RecName: Full=Major vault protein; AltName: Full=MVP100... 189 6e-47
AK298238_1(AK298238|pid:none) Homo sapiens cDNA FLJ53437 complet... 187 2e-46
AK293302_1(AK293302|pid:none) Homo sapiens cDNA FLJ54588 complet... 187 2e-46
protein update 2009. 6. 1
PSORT

psg: 0.75 gvh: 0.43 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
20.0 %: nuclear
12.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for SLB219 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLB219Z
3' end seq.
>SLB219Z.Seq
----------TTTCGGTTCAACCGATGGTTCAAGCAATGATTGCTTATACTTTGAAACCA
ATGGTTTGGTCATCACAACCATTGATGTTCAATCTGTAGAACCAGTCGATCAACGTACTC
TTGATTCTTTACAAAAATCTGTTCAATTAGCCATTGAAATTACCACCAAATCACAAGAAG
CCACTGCTCGTCAAGAAGCTGAACGTTTAGAACAAATGGCTCGTGGTGAACTTGAACGTC
AAAAGATTATCGATGAAGCCAAGAACGAAGAATCTCGTTCCAAATTGGTCCAATTACAGG
CTCAATCAGCTGCTGTCGAATCAACTGGTCAAGCTGTTGCTGAAGCTCGTGCTCGTGCTG
AAGCCGCCATCATTGAAGCTGAAAGTGAAATCAAACAAGCTCGTCTCTCAACCAGAGCCA
TTGAAATTGAAGCTCTCTCTGAAATTGAAAATCTTAAAGCCAAACATATTGTTGAAATCC
AACACATCAAATCACTCAACAATCTCGAATTAATTAAAGCCAAAGAAAGTGCTACCATCG
AAACTACCAAATTCGAAAACTATGTTGAAGCCCTCGGTTCCGATACTATCAAATCAATCG
CCCAAGCTCCAGAAGAAACCAAGGCTAAATTATTAGCTGGTTTGGGTCTCAAATCATTCA
TGATTACTGATGGTAAATCACCACTCAATCTTTTCGATACTGCCAATGGTTTAATTGCTG
ATGCTCAAAGATCAGAAGTCGATGAAGAATAAAATTTTTAGTAATCACAG
Length of 3' end seq. 760
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -