SLB213 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

SLB213
Library	SL (Link to library)
Clone ID	SLB213 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U15036-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/SL/SLB2-A/SLB213Q.Seq.d/
Representative seq. ID	SLB213E (Link to Original site)
Representative DNA sequence	>SLB213 (SLB213Q) /CSM/SL/SLB2-A/SLB213Q.Seq.d/ ATCTTTTTAAAAAAAAAAAAAATAAAACAAATAAAGAAAGAAATTAAATAAATATTAATA ATGACAACAGCAATAAATAATAATATTGTAAATAAAGAGTTTGACTTAAAAGATAAAACT TTTTTAGCATCTGGTATAACCAAAACCATTTATCAATTAAATAAAGAAGATCAATATGTT TTAATTGAATCAAATTCAGCAATTACAGCTGGTGACGGTGCAAAAAAGGATATTTTACCA AATAAAGACATTTATTCAACAATTTCAACCGTTAACAATTTCAAAGTATTACAATTATCT GGTATTAATACCCATTTTGTTAAACAAGTTGAACCAAATGCATTCATTGCAAAGAAATGT TCAATGATTCCATTGGAAGTAATTGTTAGAAGATTAGCAACTGGTAGTTATTTAAAAAGA AATACACATGTTACAGAGGGTACTAAATTCAATCCACCATTAATCGAATTTACATTCAAA GATGATGTTCAACATGATCCATTAGTTACTGAACAAGATATTTTAGANNNNATTTAAAGA TTGGTGGCGTTCCAATCACTTCAAAATTATTATCTCAAACTAGACATATTGCAACTTTAT CATTTGAAGCTTTAGAAAGAGCTTGGCAATCACTTGATGTAACTTTAGTTGATTTTAAAG TTGAATTTGGTATTACATCACAAGGTGAATTAATTTTAGCAGATGTTATTGATAATGATT CATGGAGAATTTGGCCAAAAGGTGATAAAACATTAATGAAAGATAAACAAGTTTATCGTA ATCTTCCATCTGCACTCAATACACCAGGTGCAACACCAACAACACAATCTGGTCCATTAC TTAATACTTTATCAGATCAACAATTAAAAATGATTGAAGATAATTATGCTTGGGTTGCAA CTTCCACTGAAAAATTAGTTGAATTCACTGCTGCAAATTTAAATAATAATAATAATAATA ATAATAATAATAGTAATAATAATAATAATAATACAAGTTCTACATCAGTATAATATCATT ATTTATATTACTTCATTCCTCCTCCCCATCATCATCGTCATCATCATGTATATAAAATAC CCTCTTTCACACTACCATAAAAAAAAAAAAAA
sequence update	1999. 6.18
Translated Amino Acid sequence	lfkkkknktnkernininndnsnkyckrvlkrnffsiwynqnhlsikrrsicf nikfsnyswrckkgyftkrhlfnnfnrqfqsitiiwyypfctstkcihckemf ndsigsnckisnwlfkkkytcyrgyiqstinriyiqrcstsisyTRYFRXXLKI GGVPITSKLLSQTRHIATLSFEALERAWQSLDVTLVDFKVEFGITSQGELILADVIDNDS WRIWPKGDKTLMKDKQVYRNLPSALNTPGATPTTQSGPLLNTLSDQQLKMIEDNYAWVAT STEKLVEFTAANLNNNNNNNNNNSNNNNNNTSSTSVyhylyyfippphhhrhhhvykip sftlpkkkk
Translated Amino Acid sequence (All Frames)	Frame A: iflkkkkikqikkeikilimttainnnivnkefdlkdktflasgitktiyqlnkedqyv liesnsaitagdgakkdilpnkdiystistvnnfkvlqlsginthfvkqvepnafiakkc smiplevivrrlatgsylkrnthvtegtkfnpplieftfkddvqhdplvteqdilxxir lvafqslqnyylkldilqlyhlklkelgnhlmllilklnlvlhhkvnfqmllimi hgefgqkvikhkinkfivifhlhsihqvqhqqhnlvhylilyqinnklkiimlglq lplknlnsllqiiiiiiiiiiiviiiiiiqvlhqyniiiyitsfllpiiiviimyiky plshyhkkkk Frame B: sfkkkknkrkklnky**qqqiiiliksltkiklfhlvpkpfinikkinmf lnqiqqlqlvtvqkrifyqiktfiqqfqpltiskyynylvlipillnklnqmhslqrnv qfhwklledqlvvikeihmlqrvlnsihhsnlhskmmfnmihllnkifxxfkd wwrsnhfkiiisntycnfiisfrkslaitcnfsfsiwyyitrinfsrcy*f menlakrninertslsssictqytrcntnntiwsityfirstikndrlclgcn fhkisihcckfk**************ykfyisiislfillhssspsssssscint lfhttikkkk Frame C: lfkkkknktnkernininndnsnkyckrvlkrnffsiwynqnhlsikrrsicf nikfsnyswrckkgyftkrhlfnnfnrqfqsitiiwyypfctstkcihckemf ndsigsnckisnwlfkkkytcyrgyiqstinriyiqrcstsisyTRYFRXXLKI GGVPITSKLLSQTRHIATLSFEALERAWQSLDVTLVDFKVEFGITSQGELILADVIDNDS WRIWPKGDKTLMKDKQVYRNLPSALNTPGATPTTQSGPLLNTLSDQQLKMIEDNYAWVAT STEKLVEFTAANLNNNNNNNNNNSNNNNNNTSSTSVyhylyyfippphhhrhhhvykip sftlpkkkk
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value SLB213 (SLB213Q) /CSM/SL/SLB2-A/SLB213Q.Seq.d/ 1669 0.0 VHQ389 (VHQ389Q) /CSM/VH/VHQ3-D/VHQ389Q.Seq.d/ 712 0.0 VHH651 (VHH651Q) /CSM/VH/VHH6-C/VHH651Q.Seq.d/ 595 e-169 VHB573 (VHB573Q) /CSM/VH/VHB5-D/VHB573Q.Seq.d/ 505 e-142 VHN643 (VHN643Q) /CSM/VH/VHN6-B/VHN643Q.Seq.d/ 149 1e-34 VFC768 (VFC768Q) /CSM/VF/VFC7-C/VFC768Q.Seq.d/ 44 0.005 VFC253 (VFC253Q) /CSM/VF/VFC2-C/VFC253Q.Seq.d/ 44 0.005 VSB761 (VSB761Q) /CSM/VS/VSB7-C/VSB761Q.Seq.d/ 42 0.018 VHP250 (VHP250Q) /CSM/VH/VHP2-C/VHP250Q.Seq.d/ 42 0.018 VHL589 (VHL589Q) /CSM/VH/VHL5-D/VHL589Q.Seq.d/ 42 0.018
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N (AU033597) Dictyostelium discoideum slug cDNA, clone SLB213. 809 0.0 2 (AU060716) Dictyostelium discoideum slug cDNA, clone SLB213. 959 0.0 1 (BJ427834) Dictyostelium discoideum cDNA clone:ddv63b23, 5' ... 553 0.0 4 (BJ422623) Dictyostelium discoideum cDNA clone:ddv46e14, 5' ... 434 e-165 4 (BJ419003) Dictyostelium discoideum cDNA clone:ddv34a19, 5' ... 505 e-138 1 (BJ426227) Dictyostelium discoideum cDNA clone:ddv58e12, 5' ... 149 2e-35 3 (CN625049) tae65d08.y1 Hydra EST Darmstadt I Hydra magnipapi... 54 5e-12 2 (CN553082) tae43h09.y1 Hydra EST Darmstadt I Hydra magnipapi... 54 5e-12 2 (AV968205) Ciona intestinalis cDNA, clone:cilv14o05, 5' end,... 54 2e-07 2 (EC760166) PPE00006391 Agencourt Biosciences Agen-0020 Non-n... 38 1e-06 3
dna update	2009. 1.31
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q9I7S8) RecName: Full=Multifunctional protein ADE2; AltName: Fu... 116 1e-48 (A5UWC5) RecName: Full=Phosphoribosylaminoimidazole-succinocarbo... 130 9e-48 (A7NKB4) RecName: Full=Phosphoribosylaminoimidazole-succinocarbo... 128 2e-47 BC041276_1(BC041276\|pid:none) Xenopus laevis phosphoribosylamino... 117 3e-47 (A9WK38) RecName: Full=Phosphoribosylaminoimidazole-succinocarbo... 115 3e-47 (A9B302) RecName: Full=Phosphoribosylaminoimidazole-succinocarbo... 120 2e-46 BC048051_1(BC048051\|pid:none) Danio rerio phosphoribosylaminoimi... 114 6e-46 BT074778_1(BT074778\|pid:none) Osmerus mordax clone omor-rgc-514-... 114 8e-46 (Q10457) RecName: Full=Probable multifunctional protein ADE2; In... 118 1e-45 AB205583_1(AB205583\|pid:none) Enchytraeus japonensis paics mRNA ... 120 1e-45
protein update	2009. 7. 4
PSORT	psg: 0.88 gvh: 0.45 alm: 0.44 top: 0.47 tms: 0.00 mit: 0.48 mip: 0.05 nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 64.0 %: mitochondrial 16.0 %: nuclear 12.0 %: cytoplasmic 4.0 %: cytoskeletal 4.0 %: vacuolar >> prediction for SLB213 is mit
5' end seq. ID	SLB213F
5' end seq.	>SLB213F.Seq ATCTTTTTAAAAAAAAAAAAAATAAAACAAATAAAGAAAGAAATTAAATAAATATTAATA ATGACAACAGCAATAAATAATAATATTGTAAATAAAGAGTTTGACTTAAAAGATAAAACT TTTTTAGCATCTGGTATAACCAAAACCATTTATCAATTAAATAAAGAAGATCAATATGTT TTAATTGAATCAAATTCAGCAATTACAGCTGGTGACGGTGCAAAAAAGGATATTTTACCA AATAAAGACATTTATTCAACAATTTCAACCGTTAACAATTTCAAAGTATTACAATTATCT GGTATTAATACCCATTTTGTTAAACAAGTTGAACCAAATGCATTCATTGCAAAGAAATGT TCAATGATTCCATTGGAAGTAATTGTTAGAAGATTAGCAACTGGTAGTTATTTAAAAAGA AATACACATGTTACAGAGGGTACTAAATTCAATCCACCATTAATCGAATTTACATTCAAA GATGATGTTCAACATGATCCATTAGTTACTGAACAAGATATTTTAGAGATGATTTAAAGA TTGGTGGCGTTCCAATCACTTCAAAATTATTATCTCAAACTAGACATATTGC-------- --
Length of 5' end seq.	592
3' end seq. ID	SLB213Z
3' end seq.	>SLB213Z.Seq ----------ATGAATTTAAAGATTGGTGGCGTTCCAATCACTTCAAAATTATTATCTCA AACTAGACATATTGCAACTTTATCATTTGAAGCTTTAGAAAGAGCTTGGCAATCACTTGA TGTAACTTTAGTTGATTTTAAAGTTGAATTTGGTATTACATCACAAGGTGAATTAATTTT AGCAGATGTTATTGATAATGATTCATGGAGAATTTGGCCAAAAGGTGATAAAACATTAAT GAAAGATAAACAAGTTTATCGTAATCTTCCATCTGCACTCAATACACCAGGTGCAACACC AACAACACAATCTGGTCCATTACTTAATACTTTATCAGATCAACAATTAAAAATGATTGA AGATAATTATGCTTGGGTTGCAACTTCCACTGAAAAATTAGTTGAATTCACTGCTGCAAA TTTAAATAATAATAATAATAATAATAATAATAATAGTAATAATAATAATAATAATACAAG TTCTACATCAGTATAATATCATTATTTATATTACTTCATTCCTCCTCCCCATCATCATCG TCATCATCATGTATATAAAATACCCTCTTTCACACTACCATAAAAAAAAAAAAAA
Length of 3' end seq.	585
Connected seq. ID	SLB213P
Connected seq.	>SLB213P.Seq ATCTTTTTAAAAAAAAAAAAAATAAAACAAATAAAGAAAGAAATTAAATAAATATTAATA ATGACAACAGCAATAAATAATAATATTGTAAATAAAGAGTTTGACTTAAAAGATAAAACT TTTTTAGCATCTGGTATAACCAAAACCATTTATCAATTAAATAAAGAAGATCAATATGTT TTAATTGAATCAAATTCAGCAATTACAGCTGGTGACGGTGCAAAAAAGGATATTTTACCA AATAAAGACATTTATTCAACAATTTCAACCGTTAACAATTTCAAAGTATTACAATTATCT GGTATTAATACCCATTTTGTTAAACAAGTTGAACCAAATGCATTCATTGCAAAGAAATGT TCAATGATTCCATTGGAAGTAATTGTTAGAAGATTAGCAACTGGTAGTTATTTAAAAAGA AATACACATGTTACAGAGGGTACTAAATTCAATCCACCATTAATCGAATTTACATTCAAA GATGATGTTCAACATGATCCATTAGTTACTGAACAAGATATTTTAGAGATGATTTAAAGA TTGGTGGCGTTCCAATCACTTCAAAATTATTATCTCAAACTAGACATATTGC-------- --ATGAATTTAAAGATTGGTGGCGTTCCAATCACTTCAAAATTATTATCTCAAACTAGAC ATATTGCAACTTTATCATTTGAAGCTTTAGAAAGAGCTTGGCAATCACTTGATGTAACTT TAGTTGATTTTAAAGTTGAATTTGGTATTACATCACAAGGTGAATTAATTTTAGCAGATG TTATTGATAATGATTCATGGAGAATTTGGCCAAAAGGTGATAAAACATTAATGAAAGATA AACAAGTTTATCGTAATCTTCCATCTGCACTCAATACACCAGGTGCAACACCAACAACAC AATCTGGTCCATTACTTAATACTTTATCAGATCAACAATTAAAAATGATTGAAGATAATT ATGCTTGGGTTGCAACTTCCACTGAAAAATTAGTTGAATTCACTGCTGCAAATTTAAATA ATAATAATAATAATAATAATAATAATAGTAATAATAATAATAATAATACAAGTTCTACAT CAGTATAATATCATTATTTATATTACTTCATTCCTCCTCCCCATCATCATCGTCATCATC ATGTATATAAAATACCCTCTTTCACACTACCATAAAAAAAAAAAAAA
Length of connected seq.	1177
Full length Seq ID	SLB213E
Full length Seq.	>SLB213E.Seq ATCTTTTTAAAAAAAAAAAAAATAAAACAAATAAAGAAAGAAATTAAATAAATATTAATA ATGACAACAGCAATAAATAATAATATTGTAAATAAAGAGTTTGACTTAAAAGATAAAACT TTTTTAGCATCTGGTATAACCAAAACCATTTATCAATTAAATAAAGAAGATCAATATGTT TTAATTGAATCAAATTCAGCAATTACAGCTGGTGACGGTGCAAAAAAGGATATTTTACCA AATAAAGACATTTATTCAACAATTTCAACCGTTAACAATTTCAAAGTATTACAATTATCT GGTATTAATACCCATTTTGTTAAACAAGTTGAACCAAATGCATTCATTGCAAAGAAATGT TCAATGATTCCATTGGAAGTAATTGTTAGAAGATTAGCAACTGGTAGTTATTTAAAAAGA AATACACATGTTACAGAGGGTACTAAATTCAATCCACCATTAATCGAATTTACATTCAAA GATGATGTTCAACATGATCCATTAGTTACTGAACAAGATATTTTAGANNNNATTTAAAGA TTGGTGGCGTTCCAATCACTTCAAAATTATTATCTCAAACTAGACATATTGCAACTTTAT CATTTGAAGCTTTAGAAAGAGCTTGGCAATCACTTGATGTAACTTTAGTTGATTTTAAAG TTGAATTTGGTATTACATCACAAGGTGAATTAATTTTAGCAGATGTTATTGATAATGATT CATGGAGAATTTGGCCAAAAGGTGATAAAACATTAATGAAAGATAAACAAGTTTATCGTA ATCTTCCATCTGCACTCAATACACCAGGTGCAACACCAACAACACAATCTGGTCCATTAC TTAATACTTTATCAGATCAACAATTAAAAATGATTGAAGATAATTATGCTTGGGTTGCAA CTTCCACTGAAAAATTAGTTGAATTCACTGCTGCAAATTTAAATAATAATAATAATAATA ATAATAATAATAGTAATAATAATAATAATAATACAAGTTCTACATCAGTATAATATCATT ATTTATATTACTTCATTCCTCCTCCCCATCATCATCGTCATCATCATGTATATAAAATAC CCTCTTTCACACTACCATAAAAAAAAAAAAAA
Length of full length seq.	1112

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas