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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLB204
Library SL
(Link to library)
Clone ID SLB204
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15749-1
Original site URL
Representative seq. ID SLB204E
(Link to Original site)
Representative DNA sequence 
>SLB204 (SLB204Q) /CSM/SL/SLB2-A/SLB204Q.Seq.d/
CGATGCCATTAGTACCGATCATACAATTAAACCATCCGATAATACTACAACTGATGAAGA
TGATTCAGATTTAAGTAGTAGTAGTGGTGGTGAAAGTAGTGGTATAATAGGTTCAAGTAA
TGAAAGTAAATCAATGTATAATAATGTAAATAGTAAACAAAAAATTCAAAATCAAAATCA
AAATCAAAATCAAAATCAAAATCAAAATCAAAATCAAAATCAAAATCAAAATCATAATCA
AAATCAAAATCAAAATCATATTCAAAACAATAATAACAATTCATTAATTGAAAAATCAAA
TATCTCAATACCAGCATCATCATCATCGATTAGTAATAATGATAGTTGCTATGAAAATAG
AAATGTATATATAAAAGATGAAGAAATGAATATGATATGTAACGACAGTGTAATTATGGA
TCCAATTAAAGAATTAAACAAAATTGATGGATTAAATTATGGTTGTGATTTCCAAATTGG
NAAAGAATATTCAGATTTTCAATATAACAGTGGCCATTTTATTTATGATTTGGTCGATGA
AAATGAATCTCAAATATCAAGAGAATCTGCCAAATGATTACTATTTACCTTTTAAAACAA
ATAAATATCTAAACAATAAATCAATTGTTTAATTTTCATTGTTTTTTAAAATTAAAAATA
AAAATAAAAATAAAATAAAAAA
sequence update 1999. 7.28
Translated Amino Acid sequence 
DAISTDHTIKPSDNTTTDEDDSDLSSSSGGESSGIIGSSNESKSMYNNVNSKQKIQNQNQ
NQNQNQNQNQNQNQNQNHNQNQNQNHIQNNNNNSLIEKSNISIPASSSSISNNDSCYENR
NVYIKDEEMNMICNDSVIMDPIKELNKIDGLNYGCDFQIGKEYSDFQYNSGHFIYDLVDE
NESQISRESAK*llftf*nk*iskq*inclifivf*n*k*k*k*nkk
Translated Amino Acid sequence (All Frames) 
Frame A:
rch*yrsyn*tir*yyn**r*frfk***ww*k*wynrfk**k*inv**ck**tknsksks
ksksksksksksksksks*sksksksyskq**qfin*kikylntsiiiid*****ll*k*
kciykr*rneydm*rqcnygsn*rikqn*wiklwl*fpnwxrifrfsi*qwpfyl*fgr*
k*isnikricqmitiyllkqini*tinqlfnfhcflklkikikik*k


Frame B:
DAISTDHTIKPSDNTTTDEDDSDLSSSSGGESSGIIGSSNESKSMYNNVNSKQKIQNQNQ
NQNQNQNQNQNQNQNQNHNQNQNQNHIQNNNNNSLIEKSNISIPASSSSISNNDSCYENR
NVYIKDEEMNMICNDSVIMDPIKELNKIDGLNYGCDFQIGKEYSDFQYNSGHFIYDLVDE
NESQISRESAK*llftf*nk*iskq*inclifivf*n*k*k*k*nkk


Frame C:
mplvpiiqlnhpiilqlmkmiqi*vvvvvvkvvv**vqvmkvnqciim*ivnkkfkikik
ikikikikikikikikiiikikikiifktiitih*lknqisqyqhhhhrlvimivamkie
myi*kmkk*i*yvttv*lwiqlkn*tklmd*imvvisklxkniqifnitvailfmiwsmk
mnlkyqenlpndyylpfktnkylnnksiv*fslffkiknknknkik
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLB204 (SLB204Q) /CSM/SL/SLB2-A/SLB204Q.Seq.d/                        704   0.0
FC-BF12 (FC-BF12Q) /CSM/FC/FC-BF/FC-BF12Q.Seq.d/                      674   0.0
AFI548 (AFI548Q) /CSM/AF/AFI5-B/AFI548Q.Seq.d/                        634   0.0
AHD710 (AHD710Q) /CSM/AH/AHD7-A/AHD710Q.Seq.d/                        319   3e-86
AHL453 (AHL453Q) /CSM/AH/AHL4-C/AHL453Q.Seq.d/                        305   5e-82
VHH486 (VHH486Q) /CSM/VH/VHH4-D/VHH486Q.Seq.d/                        226   3e-58
SSF807 (SSF807Q) /CSM/SS/SSF8-A/SSF807Q.Seq.d/                         44   0.003
SSA232 (SSA232Q) /CSM/SS/SSA2-B/SSA232Q.Seq.d/                         44   0.003
SSM891 (SSM891Q) /CSM/SS/SSM8-D/SSM891Q.Seq.d/                         42   0.011
VSF677 (VSF677Q) /CSM/VS/VSF6-D/VSF677Q.Seq.d/                         40   0.043
own update 2002.12.10
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ344106) Dictyostelium discoideum cDNA clone:dda18o11, 3' ...   509   0.0    3
(AU284629) Dictyostelium discoideum gamete cDNA clone:FC-BF1...   509   0.0    3
(AU060713) Dictyostelium discoideum slug cDNA, clone SLB204.      498   0.0    2
(AU033589) Dictyostelium discoideum slug cDNA, clone SLB204.      509   e-147  2
(BJ349903) Dictyostelium discoideum cDNA clone:dda38d03, 3' ...   276   e-128  2
(BJ354437) Dictyostelium discoideum cDNA clone:dda53j14, 3' ...   222   7e-92  2
(BJ441175) Dictyostelium discoideum cDNA clone:ddv45l22, 3' ...   143   7e-53  2
(EJ609235) 1092962031055 Global-Ocean-Sampling_GS-29-01-01-1...    38   0.002  2
(CT518319) A BAC library has been constructed from cultivar ...    52   0.028  1
(CR391927) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   0.081  3
dna update 2009. 1.31
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54WW7) RecName: Full=Probable serine/threonine-protein kinase ...   161   2e-45
AL031745_94(AL031745|pid:none) Plasmodium falciparum DNA from MA...    35   1.6
(Q56YU0) RecName: Full=Aldehyde dehydrogenase family 2 member C4...    33   6.1
protein update 2009. 7. 4
PSORT 

 psg: 0.75  gvh: 0.43  alm: 0.55  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for SLB204 is cyt
5' end seq. ID SLB204F
5' end seq. 
>SLB204F.Seq
CGATGCCATTAGTACCGATCATACAATTAAACCATCCGATAATACTACAACTGATGAAGA
TGATTCAGATTTAAGTAGTAGTAGTGGTGGTGAAAGTAGTGGTATAATAGGTTCAAGTAA
TGAAAGTAAATCAATGTATAATAATGTAAATAGTAAACAAAAAATTCAAAATCAAAATCA
AAATCAAAATCAAAATCAAAATCAAAATCAAAATCAAAATCAAAATCAAAATCATAATCA
AAATCAAAATCAAAATCATATTCAAAACAATAATAACAATTCATTAATTGAAAAATCAAA
TATCTCAATACCAGCATCATCATCATCGATTAGTAATAATGATAGTTGCTATGAAAATAG
AAATGTATATATAAAAGATGAAGAAATGAATATGATATGTAACGACAGTGTAATTATGGA
TCCAATTAAAGAATTAAACAAAATTGATGGATTAAATTATGGTTGTGATTTCCAAATTGG
GAAAGAATATTCAGATTTTCAATATAACAGTGGCCATTTTATTTATGATTTGGTCGATGA
AAATGAATCTCAAATATCAAGAGATCTGC----------
Length of 5' end seq. 569
3' end seq. ID SLB204Z
3' end seq. 
>SLB204Z.Seq
----------ATAACAATTCATTAATTGAAAAATCAAATATCTCAATACCAGCATCATCA
TCATCGATTAGTAATAATGATAGTTGCTATGAAAATAGAAATGTATATATAAAAGATGAA
GAAATGAATATGATATGTAACGACAGTGTAATTATGGATCCAATTAAAGAATTAAACAAA
ATTGATGGATTAAATTATGGTTGTGATTTCCAAATTGGAAAAGAATATTCAGATTTTCAA
TATAACAGTGGCCATTTTATTTATGATTTGGTCGATGAAAATGAATCTCAAATATCAAGA
GAATCTGCAAATGATTACTATTTACCTTTTAAAACAAATAAATATCTAAACAATAAATCA
ATTGTTTAATTTTCATTGTTTTTTAAAATTAAAAATAAAAATAAAAATAAAATAAAAAA
Length of 3' end seq. 409
Connected seq. ID SLB204P
Connected seq. 
>SLB204P.Seq
CGATGCCATTAGTACCGATCATACAATTAAACCATCCGATAATACTACAACTGATGAAGA
TGATTCAGATTTAAGTAGTAGTAGTGGTGGTGAAAGTAGTGGTATAATAGGTTCAAGTAA
TGAAAGTAAATCAATGTATAATAATGTAAATAGTAAACAAAAAATTCAAAATCAAAATCA
AAATCAAAATCAAAATCAAAATCAAAATCAAAATCAAAATCAAAATCAAAATCATAATCA
AAATCAAAATCAAAATCATATTCAAAACAATAATAACAATTCATTAATTGAAAAATCAAA
TATCTCAATACCAGCATCATCATCATCGATTAGTAATAATGATAGTTGCTATGAAAATAG
AAATGTATATATAAAAGATGAAGAAATGAATATGATATGTAACGACAGTGTAATTATGGA
TCCAATTAAAGAATTAAACAAAATTGATGGATTAAATTATGGTTGTGATTTCCAAATTGG
GAAAGAATATTCAGATTTTCAATATAACAGTGGCCATTTTATTTATGATTTGGTCGATGA
AAATGAATCTCAAATATCAAGAGATCTGC----------ATAACAATTCATTAATTGAAA
AATCAAATATCTCAATACCAGCATCATCATCATCGATTAGTAATAATGATAGTTGCTATG
AAAATAGAAATGTATATATAAAAGATGAAGAAATGAATATGATATGTAACGACAGTGTAA
TTATGGATCCAATTAAAGAATTAAACAAAATTGATGGATTAAATTATGGTTGTGATTTCC
AAATTGGAAAAGAATATTCAGATTTTCAATATAACAGTGGCCATTTTATTTATGATTTGG
TCGATGAAAATGAATCTCAAATATCAAGAGAATCTGCAAATGATTACTATTTACCTTTTA
AAACAAATAAATATCTAAACAATAAATCAATTGTTTAATTTTCATTGTTTTTTAAAATTA
AAAATAAAAATAAAAATAAAATAAAAAA
Length of connected seq. 978
Full length Seq ID SLB204E
Full length Seq. 
>SLB204E.Seq
CGATGCCATTAGTACCGATCATACAATTAAACCATCCGATAATACTACAACTGATGAAGA
TGATTCAGATTTAAGTAGTAGTAGTGGTGGTGAAAGTAGTGGTATAATAGGTTCAAGTAA
TGAAAGTAAATCAATGTATAATAATGTAAATAGTAAACAAAAAATTCAAAATCAAAATCA
AAATCAAAATCAAAATCAAAATCAAAATCAAAATCAAAATCAAAATCAAAATCATAATCA
AAATCAAAATCAAAATCATATTCAAAACAATAATAACAATTCATTAATTGAAAAATCAAA
TATCTCAATACCAGCATCATCATCATCGATTAGTAATAATGATAGTTGCTATGAAAATAG
AAATGTATATATAAAAGATGAAGAAATGAATATGATATGTAACGACAGTGTAATTATGGA
TCCAATTAAAGAATTAAACAAAATTGATGGATTAAATTATGGTTGTGATTTCCAAATTGG
NAAAGAATATTCAGATTTTCAATATAACAGTGGCCATTTTATTTATGATTTGGTCGATGA
AAATGAATCTCAAATATCAAGAGAATCTGCCAAATGATTACTATTTACCTTTTAAAACAA
ATAAATATCTAAACAATAAATCAATTGTTTAATTTTCATTGTTTTTTAAAATTAAAAATA
AAAATAAAAATAAAATAAAAAA
Length of full length seq. 682