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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLB189
Library SL
(Link to library)
Clone ID SLB189
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SLB189Z
(Link to Original site)
Representative DNA sequence 
>SLB189 (SLB189Q) /CSM/SL/SLB1-D/SLB189Q.Seq.d/
XXXXXXXXXXGTGAACGTGCTATGACCAAAGATAATAATTTATTGGGTAAATTTGAACTT
TCTGGTATTCCACCAGCACCAAGAGGTGTACCACAAGTTGAAGTTTACATTTGATGTTGA
TGCAAATGGTATCTTAAATGTATCAGCTGAAGATAAATCAACTGGTAACAAACAAAAGAT
TACAATTACCAATGATAAAGGTCGTCTTTCAAAAGAAGAAATTGAAAAAATGGTTGCTGA
TGCAGAGAAATTCAAACAACAAGATGAACAACAAAAAGATCGTGTTGAATCAAAGAATAA
ATTGGAAAATTATGCATTCACTGTTAAAAATTCAATTAAAGATGAAAAAGTTGCAGCCAA
AATTTCAGATTCAGATAAATCAACTATTGAATCTGAAACTGAAAGTGTACTCAAATGGTT
AGAATCAAATCAAACCGCAGAAAAGGATGAATATGAAGATAAGATGAAAGCCTTAGAAGC
AGTTGTCAATCCAATCATGAGTAAACTCTATCAAGAAGGAGGTATGCCACAAGGTGGTGG
TATGCCAGGTGGTATGTCAAATGATTCACCAAAGAGTTCAAACAACAAAGTAGACGAATT
AGATTGACGGAATTTTTCAGAGGAAAACATCTCTATCAAATAGATTTCTTAAAAAATAAT
AAGTTAGTAAAATCAATAAAGCTTCTCATATATAGTACACATT
sequence update 1998. 3.27
Translated Amino Acid sequence 
---nvl*PKIIIYWVNLNFLVFHQHQEVYHKLKFTFDVDANGILNVSAEDKSTGNKQKIT
ITNDKGRLSKEEIEKMVADAEKFKQQDEQQKDRVESKNKLENYAFTVKNSIKDEKVAAKI
SDSDKSTIESETESVLKWLESNQTAEKDEYEDKMKALEAVVNPIMSKLYQEGGMPQGGGM
PGGMSNDSPKSSNNKVDELD*rnfseenisik*is*kiis**nq*sfsyivhi
Translated Amino Acid sequence (All Frames) 
Frame A:
---*tcydqr**fig*i*tfwyststkrctts*slhlmlmqmvs*myqlkinqlvtnkrl
qlpmikvvfqkkklkkwllmqrnsnnkmnnkkivlnqrinwkimhsllkiqlkmkklqpk
fqiqinqllnlklkvysng*nqikpqkrmnmkir*kp*kqlsiqs*vnsikkevchkvvv
cqvvcqmihqrvqttk*tn*idgifqrktslsnrflkk**vskinkashi*yt


Frame B:
---eramtkdnnllgkfelsgippaprgvpqvevyi*c*ckwylkcis*r*inw*qtkdy
nyq**rssfkrrn*kngc*creiqttr*ttkrsc*ike*igklcihc*kfn*r*kscsqn
frfr*iny*i*n*kctqmvriksnrrkg*i*r*deslrsscqsnhe*tlsrrryatrwwy
arwyvk*ftkefkqqsrrirlteffrgkhlyqidflknnklvksiklliysth


Frame C:
---nvl*PKIIIYWVNLNFLVFHQHQEVYHKLKFTFDVDANGILNVSAEDKSTGNKQKIT
ITNDKGRLSKEEIEKMVADAEKFKQQDEQQKDRVESKNKLENYAFTVKNSIKDEKVAAKI
SDSDKSTIESETESVLKWLESNQTAEKDEYEDKMKALEAVVNPIMSKLYQEGGMPQGGGM
PGGMSNDSPKSSNNKVDELD*rnfseenisik*is*kiis**nq*sfsyivhi
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLB189 (SLB189Q) /CSM/SL/SLB1-D/SLB189Q.Seq.d/                       1374   0.0
VHP266 (VHP266Q) /CSM/VH/VHP2-C/VHP266Q.Seq.d/                       1358   0.0
VFL101 (VFL101Q) /CSM/VF/VFL1-A/VFL101Q.Seq.d/                       1358   0.0
CHS481 (CHS481Q) /CSM/CH/CHS4-D/CHS481Q.Seq.d/                       1358   0.0
CHS205 (CHS205Q) /CSM/CH/CHS2-A/CHS205Q.Seq.d/                       1358   0.0
CHQ771 (CHQ771Q) /CSM/CH/CHQ7-C/CHQ771Q.Seq.d/                       1358   0.0
AHC324 (AHC324Q) /CSM/AH/AHC3-A/AHC324Q.Seq.d/                       1358   0.0
CHQ617 (CHQ617Q) /CSM/CH/CHQ6-A/CHQ617Q.Seq.d/                       1356   0.0
VHP719 (VHP719Q) /CSM/VH/VHP7-A/VHP719Q.Seq.d/                       1354   0.0
VHP716 (VHP716Q) /CSM/VH/VHP7-A/VHP716Q.Seq.d/                       1354   0.0
own update 2002.12.10
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU033579) Dictyostelium discoideum slug cDNA, clone SLB189.     1372   0.0    1
(X75263) D.discoideum (AX3) mRNA for heat shock cognate prot...  1187   0.0    2
(AU039449) Dictyostelium discoideum slug cDNA, clone SLH812.     1187   0.0    2
(AU034156) Dictyostelium discoideum slug cDNA, clone SLC111.     1187   0.0    2
(C92565) Dictyostelium discoideum slug cDNA, clone SSE694.       1187   0.0    2
(BJ446063) Dictyostelium discoideum cDNA clone:ddv61c18, 3' ...  1187   0.0    2
(BJ433801) Dictyostelium discoideum cDNA clone:ddv23a01, 3' ...  1187   0.0    2
(BJ386592) Dictyostelium discoideum cDNA clone:ddc58b22, 3' ...  1187   0.0    2
(BJ386397) Dictyostelium discoideum cDNA clone:ddc58i02, 3' ...  1187   0.0    2
(BJ385656) Dictyostelium discoideum cDNA clone:ddc55n17, 3' ...  1187   0.0    2
dna update 2009. 1.31
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P36415) RecName: Full=Heat shock cognate 70 kDa protein 1;     ...   265   8e-83
S37394(S37394) dnaK-type molecular chaperone hsc70 - slime mold ...   265   8e-83
(Q54BE0) RecName: Full=Heat shock cognate 70 kDa protein 3;           174   2e-54
AF033852_1(AF033852|pid:none) Spinacia oleracea cytosolic heat s...   177   2e-54
FB790108_1(FB790108|pid:none) Sequence 9381 from Patent WO200803...   175   3e-54
EF506932_1(EF506932|pid:none) Fasciola hepatica heat shock prote...   171   3e-54
FB790112_1(FB790112|pid:none) Sequence 9385 from Patent WO200803...   173   7e-54
EF506931_1(EF506931|pid:none) Fasciola gigantica heat shock prot...   169   7e-54
(P22953) RecName: Full=Heat shock cognate 70 kDa protein 1;     ...   172   9e-54
S46302(S46302;S41402;JA0169;S36623) dnaK-type molecular chaperon...   172   9e-54
protein update 2009. 5.31
PSORT 

 psg: 0.87  gvh: 0.33  alm: 0.48  top: 0.50  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 24.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: endoplasmic reticulum
	  4.0 %: peroxisomal

>> prediction for SLB189 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLB189Z
3' end seq. 
>SLB189Z.Seq
----------GTGAACGTGCTATGACCAAAGATAATAATTTATTGGGTAAATTTGAACTT
TCTGGTATTCCACCAGCACCAAGAGGTGTACCACAAGTTGAAGTTTACATTTGATGTTGA
TGCAAATGGTATCTTAAATGTATCAGCTGAAGATAAATCAACTGGTAACAAACAAAAGAT
TACAATTACCAATGATAAAGGTCGTCTTTCAAAAGAAGAAATTGAAAAAATGGTTGCTGA
TGCAGAGAAATTCAAACAACAAGATGAACAACAAAAAGATCGTGTTGAATCAAAGAATAA
ATTGGAAAATTATGCATTCACTGTTAAAAATTCAATTAAAGATGAAAAAGTTGCAGCCAA
AATTTCAGATTCAGATAAATCAACTATTGAATCTGAAACTGAAAGTGTACTCAAATGGTT
AGAATCAAATCAAACCGCAGAAAAGGATGAATATGAAGATAAGATGAAAGCCTTAGAAGC
AGTTGTCAATCCAATCATGAGTAAACTCTATCAAGAAGGAGGTATGCCACAAGGTGGTGG
TATGCCAGGTGGTATGTCAAATGATTCACCAAAGAGTTCAAACAACAAAGTAGACGAATT
AGATTGACGGAATTTTTCAGAGGAAAACATCTCTATCAAATAGATTTCTTAAAAAATAAT
AAGTTAGTAAAATCAATAAAGCTTCTCATATATAGTACACATT
Length of 3' end seq. 693
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -