NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLB182
Library SL
(Link to library)
Clone ID SLB182
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SLB182Z
(Link to Original site)
Representative DNA sequence 
>SLB182 (SLB182Q) /CSM/SL/SLB1-D/SLB182Q.Seq.d/
XXXXXXXXXXAAACCATTAAAATCGGTAATCCACTTGAAGAAGGTGTTTTAGTAGGTCCA
CTCCACACCCAAAGCGCTGTTAAAGAATTCACTGAAGGTCTTGAAGAAATAAAAAAGCAA
GGTGGTAAGGTCGTCATTGGTGGTAATAAACTCGATATCAGTGGTGGAAACTTTGTTGAA
CCAACCGTCGTTGCCATTGAACATGATGCTCCAATCGTAAAGACTGAACTCTTTGTTCCA
ATTCTCTACATAATGAAATTCAAAAATCTTGACGATGCTTTTGCCTGGAATAATGAAGTC
CCACAAGGTCTCTCATCTTCCCTCTTCACAAACAATCAAAAGAATATCTTCAAATGGCTT
GGACCTACCGGATCTGACTGTGGTATAGTTAACGTAAATGTAGCTACAAACGGTGCTGAA
ATTGGTGGTGCCTTTGGAGGTGAAAAAGAGACCGGAGGTGGTAGAGAATCTGGCTCAGAC
AGCTGGAAACAGTATTGCCGTCGTAGTACTAATACAATCAACTATGGTAATACTATGCCA
TTATCACAAGGTATCAATTTTAACTAAAATTACCAAAAAAAAAAAACCAAATGTAACTTA
CATAACATAAATAAAAGAATATTGTTGATATTTGTTCATAATTAAACAAAAAAA
sequence update 1998. 3.27
Translated Amino Acid sequence 
---TIKIGNPLEEGVLVGPLHTQSAVKEFTEGLEEIKKQGGKVVIGGNKLDISGGNFVEP
TVVAIEHDAPIVKTELFVPILYIMKFKNLDDAFAWNNEVPQGLSSSLFTNNQKNIFKWLG
PTGSDCGIVNVNVATNGAEIGGAFGGEKETGGGRESGSDSWKQYCRRSTNTINYGNTMPL
SQGINFN*nyqkkktkcnlhninkrillifvhn*tkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---nh*nr*st*rrcfsrstphpkrc*rih*rs*rnkkarw*grhww**tryqwwklc*t
nrrch*t*csnrkd*tlcsnslhneiqks*rcfcle**sptrslifplhkqskeylqmaw
tyri*lwys*rkcsykrc*nwwclwr*krdrrw*riwlrqletvlps*y*ynqlw*yyai
itryqf*lklpkkknqm*lt*hk*knivdics*lnkk


Frame B:
---TIKIGNPLEEGVLVGPLHTQSAVKEFTEGLEEIKKQGGKVVIGGNKLDISGGNFVEP
TVVAIEHDAPIVKTELFVPILYIMKFKNLDDAFAWNNEVPQGLSSSLFTNNQKNIFKWLG
PTGSDCGIVNVNVATNGAEIGGAFGGEKETGGGRESGSDSWKQYCRRSTNTINYGNTMPL
SQGINFN*nyqkkktkcnlhninkrillifvhn*tkk


Frame C:
---plksvihlkkvf**vhstpkallknslkvlkk*kskvvrsslvvinsisvvetllnq
pslplnmmlqs*rlnslfqfst**nskiltmllpgimkshkvshlpssqtikrissngld
lpdltvv*lt*m*lqtvlklvvplevkkrpevvenlaqtagnsiavvvliqstmvilchy
hkvsiltkitkkkkpnvtyit*ikeyc*ylfiikqk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLB182 (SLB182Q) /CSM/SL/SLB1-D/SLB182Q.Seq.d/                       1191   0.0
SLC178 (SLC178Q) /CSM/SL/SLC1-D/SLC178Q.Seq.d/                       1189   0.0
SLH643 (SLH643Q) /CSM/SL/SLH6-B/SLH643Q.Seq.d/                       1187   0.0
SLG622 (SLG622Q) /CSM/SL/SLG6-A/SLG622Q.Seq.d/                       1183   0.0
SLC819 (SLC819Q) /CSM/SL/SLC8-A/SLC819Q.Seq.d/                       1183   0.0
SLE339 (SLE339Q) /CSM/SL/SLE3-B/SLE339Q.Seq.d/                       1179   0.0
SLA115 (SLA115Q) /CSM/SL/SLA1-A/SLA115Q.Seq.d/                       1172   0.0
SLB294 (SLB294Q) /CSM/SL/SLB2-D/SLB294Q.Seq.d/                       1170   0.0
SLE408 (SLE408Q) /CSM/SL/SLE4-A/SLE408Q.Seq.d/                       1158   0.0
SLB181 (SLB181Q) /CSM/SL/SLB1-D/SLB181Q.Seq.d/                       1118   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC117076) Dictyostelium discoideum chromosome 2 map 3323568...  1118   0.0    2
(AU039868) Dictyostelium discoideum slug cDNA, clone SLG622.     1118   0.0    2
(AU034467) Dictyostelium discoideum slug cDNA, clone SLC178.     1118   0.0    2
(AU034398) Dictyostelium discoideum slug cDNA, clone SLC819.     1118   0.0    2
(AU033573) Dictyostelium discoideum slug cDNA, clone SLB182.     1118   0.0    2
(AU033572) Dictyostelium discoideum slug cDNA, clone SLB181.     1118   0.0    1
(AU039362) Dictyostelium discoideum slug cDNA, clone SLH643.     1116   0.0    2
(BJ377414) Dictyostelium discoideum cDNA clone:ddc24a16, 3' ...  1112   0.0    1
(BJ375976) Dictyostelium discoideum cDNA clone:ddc20o18, 3' ...  1112   0.0    1
(AU034795) Dictyostelium discoideum slug cDNA, clone SLE339.     1110   0.0    2
dna update 2009. 1.31
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P83401) RecName: Full=Putative aldehyde dehydrogenase family 7 ...   304   2e-81
AY250704_1(AY250704|pid:none) Glycine max aldehyde dehydrogenase...   206   4e-52
EF145268_1(EF145268|pid:none) Populus trichocarpa clone WS01122_...   194   2e-48
BT067707_1(BT067707|pid:none) Zea mays full-length cDNA clone ZM...   191   2e-47
AY847462_1(AY847462|pid:none) Acanthopagrus schlegelii antiquiti...   188   1e-46
BT044648_1(BT044648|pid:none) Salmo salar clone ssal-rgf-001-326...   187   3e-46
AF323586_1(AF323586|pid:none) Oryza sativa aldehyde dehydrogenas...   186   4e-46
(P49419) RecName: Full=Alpha-aminoadipic semialdehyde dehydrogen...   185   9e-46
BC044367_1(BC044367|pid:none) Danio rerio aldehyde dehydrogenase...   184   2e-45
AK145873_1(AK145873|pid:none) Mus musculus 14 days embryo liver ...   184   2e-45
protein update 2009. 5.31
PSORT 

 psg: 0.75  gvh: 0.41  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 32.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for SLB182 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLB182Z
3' end seq. 
>SLB182Z.Seq
----------AAACCATTAAAATCGGTAATCCACTTGAAGAAGGTGTTTTAGTAGGTCCA
CTCCACACCCAAAGCGCTGTTAAAGAATTCACTGAAGGTCTTGAAGAAATAAAAAAGCAA
GGTGGTAAGGTCGTCATTGGTGGTAATAAACTCGATATCAGTGGTGGAAACTTTGTTGAA
CCAACCGTCGTTGCCATTGAACATGATGCTCCAATCGTAAAGACTGAACTCTTTGTTCCA
ATTCTCTACATAATGAAATTCAAAAATCTTGACGATGCTTTTGCCTGGAATAATGAAGTC
CCACAAGGTCTCTCATCTTCCCTCTTCACAAACAATCAAAAGAATATCTTCAAATGGCTT
GGACCTACCGGATCTGACTGTGGTATAGTTAACGTAAATGTAGCTACAAACGGTGCTGAA
ATTGGTGGTGCCTTTGGAGGTGAAAAAGAGACCGGAGGTGGTAGAGAATCTGGCTCAGAC
AGCTGGAAACAGTATTGCCGTCGTAGTACTAATACAATCAACTATGGTAATACTATGCCA
TTATCACAAGGTATCAATTTTAACTAAAATTACCAAAAAAAAAAAACCAAATGTAACTTA
CATAACATAAATAAAAGAATATTGTTGATATTTGTTCATAATTAAACAAAAAAA
Length of 3' end seq. 644
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -