SLB181
Library SL
(Link to library)
Clone ID SLB181
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16358-1
Original site URL
Representative seq. ID SLB181Z
(Link to Original site)
Representative DNA sequence
>SLB181 (SLB181Q) /CSM/SL/SLB1-D/SLB181Q.Seq.d/
XXXXXXXXXXCAATGCCATCGTTGTTGCTGAAGATGCTGATATTGAACTCGTTCTCCGTG
CCGTTCTCTTTGCTTCTGTTGGTACCACTGGACAACGTTGTACCACTTGTAGACGTTTAT
TCGTTCACGAATCATTGTATGACACCATTTTGGAACGTTTAACCAAAGCCTACAAAACCA
TTAAAATCGGTAATCCACTTGAAGAAGGTGTTTTAGTAGGTCCACTCCACACCCAAAGCG
CTGTTAAAGAATTCACTGAAGGTCTTGAAGAAATAAAAAAGCAAGGTGGTAAGGTCGTCA
TTGGTGGTAATAAACTCGATATCAGTGGTGGAAACTTTGTTGAACCAACCGTCGTTGCCA
TTGAACATGATGCTCCAATCGTAAAGACTGAACTCTTTGTTCCAATTCTCTACATAATGA
AATTCAAAAATCTTGACGATGCTTTTGCCTGGAATAATGAAGTCCCACAAGGTCTCTCAT
CTTCCCTCTTCACAAACAATCAAAAGAATATCTTCAAATGGCTTGGACCTACCGGATCTG
ACTGTGGTATAGTTAACGTAAATGTAGCTACAAACGGTGCTGAAATTGGTGGTGCCTTTG
GAGGTGAAAAAGAGACCGGAGGTGGTAGAGAATCTGGCTCAGACAGCTGGAAACAGTATT
GCCGTCGTAGTACTAATACAATCAACTATGGTAATACTATGCCATTATCACAAGGTATCA
ATTTTAACTAAAATTACCAAAAAAA
sequence update 1998. 3.27
Translated Amino Acid sequence
---NAIVVAEDADIELVLRAVLFASVGTTGQRCTTCRRLFVHESLYDTILERLTKAYKTI
KIGNPLEEGVLVGPLHTQSAVKEFTEGLEEIKKQGGKVVIGGNKLDISGGNFVEPTVVAI
EHDAPIVKTELFVPILYIMKFKNLDDAFAWNNEVPQGLSSSLFTNNQKNIFKWLGPTGSD
CGIVNVNVATNGAEIGGAFGGEKETGGGRESGSDSWKQYCRRSTNTINYGNTMPLSQGIN
FN*nyqk


Translated Amino Acid sequence (All Frames)
Frame A:
---NAIVVAEDADIELVLRAVLFASVGTTGQRCTTCRRLFVHESLYDTILERLTKAYKTI
KIGNPLEEGVLVGPLHTQSAVKEFTEGLEEIKKQGGKVVIGGNKLDISGGNFVEPTVVAI
EHDAPIVKTELFVPILYIMKFKNLDDAFAWNNEVPQGLSSSLFTNNQKNIFKWLGPTGSD
CGIVNVNVATNGAEIGGAFGGEKETGGGRESGSDSWKQYCRRSTNTINYGNTMPLSQGIN
FN*nyqk


Frame B:
---mpslllkmlilnsfsvpfsllllvpldnvvplvdvysftnhcmtpfwnv*pkptkpl
ksvihlkkvf**vhstpkallknslkvlkk*kskvvrsslvvinsisvvetllnqpslpl
nmmlqs*rlnslfqfst**nskiltmllpgimkshkvshlpssqtikrissngldlpdlt
vv*lt*m*lqtvlklvvplevkkrpevvenlaqtagnsiavvvliqstmvilchyhkvsi
ltkitkk


Frame C:
---chrcc*rc*y*trspcrslcfcwyhwttlyhl*tfirsriiv*hhfgtfnqslqnh*
nr*st*rrcfsrstphpkrc*rih*rs*rnkkarw*grhww**tryqwwklc*tnrrch*
t*csnrkd*tlcsnslhneiqks*rcfcle**sptrslifplhkqskeylqmawtyri*l
wys*rkcsykrc*nwwclwr*krdrrw*riwlrqletvlps*y*ynqlw*yyaiitryqf
*lklpkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLB181 (SLB181Q) /CSM/SL/SLB1-D/SLB181Q.Seq.d/ 1443 0.0
CFI506 (CFI506Q) /CSM/CF/CFI5-A/CFI506Q.Seq.d/ 1431 0.0
SFE588 (SFE588Q) /CSM/SF/SFE5-D/SFE588Q.Seq.d/ 1429 0.0
CFJ667 (CFJ667Q) /CSM/CF/CFJ6-C/CFJ667Q.Seq.d/ 1427 0.0
SFJ536 (SFJ536Q) /CSM/SF/SFJ5-B/SFJ536Q.Seq.d/ 1411 0.0
SFD368 (SFD368Q) /CSM/SF/SFD3-C/SFD368Q.Seq.d/ 1411 0.0
VFH586 (VFH586Q) /CSM/VF/VFH5-D/VFH586Q.Seq.d/ 1409 0.0
AFC489 (AFC489Q) /CSM/AF/AFC4-D/AFC489Q.Seq.d/ 1409 0.0
CFH212 (CFH212Q) /CSM/CF/CFH2-A/CFH212Q.Seq.d/ 1398 0.0
VFJ233 (VFJ233Q) /CSM/VF/VFJ2-B/VFJ233Q.Seq.d/ 1360 0.0

own update 2001.11.27
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 1443 0.0 1
(AU033572) Dictyostelium discoideum slug cDNA, clone SLB181. 1443 0.0 1
(BJ375278) Dictyostelium discoideum cDNA clone:ddc18k01, 3' ... 1431 0.0 1
(BJ398092) Dictyostelium discoideum cDNA clone:dds10o21, 3' ... 1429 0.0 1
(BJ375925) Dictyostelium discoideum cDNA clone:ddc20e18, 3' ... 1427 0.0 1
(BJ434447) Dictyostelium discoideum cDNA clone:ddv16k21, 3' ... 1409 0.0 1
(BJ402059) Dictyostelium discoideum cDNA clone:dds20g09, 3' ... 1409 0.0 1
(BJ399814) Dictyostelium discoideum cDNA clone:dds7h17, 3' e... 1409 0.0 1
(BJ341229) Dictyostelium discoideum cDNA clone:dda5b24, 3' e... 1409 0.0 1
(BJ432623) Dictyostelium discoideum cDNA clone:ddv19a10, 3' ... 1360 0.0 1
dna update 2009. 1.31
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P83401) RecName: Full=Putative aldehyde dehydrogenase family 7 ... 378 e-103
BT067707_1(BT067707|pid:none) Zea mays full-length cDNA clone ZM... 238 1e-61
EF145268_1(EF145268|pid:none) Populus trichocarpa clone WS01122_... 236 4e-61
AY847462_1(AY847462|pid:none) Acanthopagrus schlegelii antiquiti... 236 5e-61
AF323586_1(AF323586|pid:none) Oryza sativa aldehyde dehydrogenas... 234 3e-60
BC044367_1(BC044367|pid:none) Danio rerio aldehyde dehydrogenase... 232 1e-59
AY250704_1(AY250704|pid:none) Glycine max aldehyde dehydrogenase... 231 1e-59
BT044648_1(BT044648|pid:none) Salmo salar clone ssal-rgf-001-326... 231 1e-59
(P49419) RecName: Full=Alpha-aminoadipic semialdehyde dehydrogen... 231 2e-59
EF678715_1(EF678715|pid:none) Picea sitchensis clone WS0295_M17 ... 228 1e-58
protein update 2009. 5.31
PSORT

psg: 0.75 gvh: 0.60 alm: 0.38 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: Golgi

>> prediction for SLB181 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLB181Z
3' end seq.
>SLB181Z.Seq
----------CAATGCCATCGTTGTTGCTGAAGATGCTGATATTGAACTCGTTCTCCGTG
CCGTTCTCTTTGCTTCTGTTGGTACCACTGGACAACGTTGTACCACTTGTAGACGTTTAT
TCGTTCACGAATCATTGTATGACACCATTTTGGAACGTTTAACCAAAGCCTACAAAACCA
TTAAAATCGGTAATCCACTTGAAGAAGGTGTTTTAGTAGGTCCACTCCACACCCAAAGCG
CTGTTAAAGAATTCACTGAAGGTCTTGAAGAAATAAAAAAGCAAGGTGGTAAGGTCGTCA
TTGGTGGTAATAAACTCGATATCAGTGGTGGAAACTTTGTTGAACCAACCGTCGTTGCCA
TTGAACATGATGCTCCAATCGTAAAGACTGAACTCTTTGTTCCAATTCTCTACATAATGA
AATTCAAAAATCTTGACGATGCTTTTGCCTGGAATAATGAAGTCCCACAAGGTCTCTCAT
CTTCCCTCTTCACAAACAATCAAAAGAATATCTTCAAATGGCTTGGACCTACCGGATCTG
ACTGTGGTATAGTTAACGTAAATGTAGCTACAAACGGTGCTGAAATTGGTGGTGCCTTTG
GAGGTGAAAAAGAGACCGGAGGTGGTAGAGAATCTGGCTCAGACAGCTGGAAACAGTATT
GCCGTCGTAGTACTAATACAATCAACTATGGTAATACTATGCCATTATCACAAGGTATCA
ATTTTAACTAAAATTACCAAAAAAA
Length of 3' end seq. 735
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -