SLB179 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

SLB179
Library	SL (Link to library)
Clone ID	SLB179 (Link to dictyBase)
Atlas ID	-
NBRP ID	G01904
dictyBase ID	DDB0231387
Link to Contig	Contig-U15323-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/SL/SLB1-D/SLB179Q.Seq.d/
Representative seq. ID	SLB179E (Link to Original site)
Representative DNA sequence	>SLB179 (SLB179Q) /CSM/SL/SLB1-D/SLB179Q.Seq.d/ CACACCATTATACTATATACTTTTTTTTTTAAAATGAATTCTAAATTTGCTGATGAATTA ATTGCAACTGCTAAAGCAATTGTAGCACCAGGTAAAGGTATTTTAGCAGCAGATGAATCA ACCAATACAATTGGAGCTCGTTTCAAAAAGATTAATTTAGAAAACAATGAAGAGAACAGA AGAGCCTACAGAGAACTTTTAATTGGTACTGGTAATGGTGTTAACGAATTTATTGGTGGT ATTATTTTATATGAAGAAACTCTTTACCAAAAGATGGCAGATGGTAGATTATTCACAGAT GTTTTAAGAGAACAAAAGATTCACATTGGTATTAAAGTTGATAAGGGTGTTGTACCAATT CCAGGTACCGATGGTGAAACCTCAACCCAAGGTTTAGATGGTCTTGCAGAGCGTTGTAAG AAATACTATGAAGCAGGTGCACGTTTCGCAAAATGGAGAGCAGTCTTAAAGATTGATCTT GCCAAGAATTGTCCATCCCAATTATCAATCACTGAAAATGCACACACATTAGCTCGTTAT GCTGCAATTTGTCAAGAGAATGGTTTGGTCCCAATCGTCGAACCAGAAATCTTAATGGAT GGTAATCACACTGTCGAGCAATCTGCTGAAGTCACTGAAAAAGTTTTAGCTGCAGTTTTC AAAGCACTCAATGACCATCATATCTTATTAGAAGGTGCCTTATTAAAACCAAATATGGTC GTCAATGGTACCGACTGTCCAATCAAAGCCACCTCTGAACAAATTGGTAAATTCACCGTC CGTACCCTTCAACGTACTGTTCCACCAGCTCTTACTGGTGTTGTTTTCTTATCTGGTGGT CAAACTGAAATTGAAGCCACTGCAAACTTAAACGCTATGAATGTCTTACCAAATCGTCCA TGGGCTCTCTCTTTCTCATACGGTCGTGCCTTACAGGCCTCTGTCATCTCCACTTGGAAA GGTGAATCTGCCAACGTTGAAGCTGCTCGTAAAGTTTATTTACATCGTGCCAAGTGTAAC TCTCTTGCTCAACTCGGTAAATACACTGGTGAGGAATCAACTGGTTCAGCATCTGAATCA TTATATGTAAAAGATTACAAATTTTAAATATATAAAATAAATATCTAAACATTNNNNAAA TAATAATAATAATAATAATAATTTATTAAAATTTA
sequence update	1999. 6.18
Translated Amino Acid sequence	HTIILYTFFFKMNSKFADELIATAKAIVAPGKGILAADESTNTIGARFKKINLENNEENR RAYRELLIGTGNGVNEFIGGIILYEETLYQKMADGRLFTDVLREQKIHIGIKVDKGVVPI PGTDGETSTQGLDGLAERCKKYYEAGARFAKWRAVLKIDLAKNCPSQLSITENAHTLARY AAICQENGLVPIVEPEILMDGNHTVEQSAEVTEKVLAAVFKALNDHHILLEGALLKPNMV VNGTDCPIKATSEQIGKFTVRTLQRTVPPALTGVVFLSGGQTEIEATANLNAMNVLPNRP WALSFSYGRALQASVISTWKGESANVEAARKVYLHRAKCNSLAQLGKYTGEESTGSASES LYVKDYKFiykinitxxk*******fiki
Translated Amino Acid sequence (All Frames)	Frame A: HTIILYTFFFKMNSKFADELIATAKAIVAPGKGILAADESTNTIGARFKKINLENNEENR RAYRELLIGTGNGVNEFIGGIILYEETLYQKMADGRLFTDVLREQKIHIGIKVDKGVVPI PGTDGETSTQGLDGLAERCKKYYEAGARFAKWRAVLKIDLAKNCPSQLSITENAHTLARY AAICQENGLVPIVEPEILMDGNHTVEQSAEVTEKVLAAVFKALNDHHILLEGALLKPNMV VNGTDCPIKATSEQIGKFTVRTLQRTVPPALTGVVFLSGGQTEIEATANLNAMNVLPNRP WALSFSYGRALQASVISTWKGESANVEAARKVYLHRAKCNSLAQLGKYTGEESTGSASES LYVKDYKFiykinitxxk******fiki Frame B: tplyyilfflkilnllmnlqllkqlhqvkvfqqmnqpiqlelvskrliktmkrte eptenflvlvmvltnllvvlfymkklftkrwqmvdysqmfenkrftlvlklirvlyqf qvpmvkpqpkvmvlqsvvrntmkqvhvsqngeqsrlilprivhpnyqslkmhthlvm lqfvkrmvwsqssnqkswmvitlssnllkslkkflqfskhsmtiisykvpynqiws smvptvqskpplnklvnspsvpfnvlfhqlllvlfsylvvklklkplqttlmsyqivh glslshtvvpyrplssplgkvnlptlkllvkfiyivpsvtlllnsvntlvrnqlvqhlnh ymkitnfkyikiskhxxnnnnnnnnllkf Frame C: hhytiyfffneficincncsncstrryfssrinqynwssfqkdfrkqreqk slqrtfnwywwcriywwyyfirnslpkdgrwiihrcfkrtkdshwysgcctns ryrwnlnprfrwscraleilsrctfrkmesslkdscqelsipiinhkcthisslc cnlsrewfgpnrrtrnlngwshcraicshksfscsfqstqpsylirrcliktkygr qwyrlsnqshltnwihrpypstycstssywccfliwwsnnshcklkryecltkssm gslflirscltglchlhlericqrscsslftscqvlscstrihwginwfsiii ickrlqilninkylnixxiiiiiiiiy*nl
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value SLB179 (SLB179Q) /CSM/SL/SLB1-D/SLB179Q.Seq.d/ 2093 0.0 VFK562 (VFK562Q) /CSM/VF/VFK5-C/VFK562Q.Seq.d/ 2087 0.0 VFI422 (VFI422Q) /CSM/VF/VFI4-A/VFI422Q.Seq.d/ 2087 0.0 CFF463 (CFF463Q) /CSM/CF/CFF4-C/CFF463Q.Seq.d/ 2087 0.0 VFM531 (VFM531Q) /CSM/VF/VFM5-B/VFM531Q.Seq.d/ 2079 0.0 AFN510 (AFN510Q) /CSM/AF/AFN5-A/AFN510Q.Seq.d/ 2072 0.0 CFH402 (CFH402Q) /CSM/CF/CFH4-A/CFH402Q.Seq.d/ 2068 0.0 CFE766 (CFE766Q) /CSM/CF/CFE7-C/CFE766Q.Seq.d/ 2068 0.0 CFC320 (CFC320Q) /CSM/CF/CFC3-A/CFC320Q.Seq.d/ 2064 0.0 CFJ531 (CFJ531Q) /CSM/CF/CFJ5-B/CFJ531Q.Seq.d/ 2062 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N (AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 2012 0.0 1 (BJ371955) Dictyostelium discoideum cDNA clone:ddc10d17, 3' ... 1467 0.0 1 (BJ398047) Dictyostelium discoideum cDNA clone:dds10b24, 3' ... 1358 0.0 1 (BJ372209) Dictyostelium discoideum cDNA clone:ddc11n16, 3' ... 1358 0.0 1 (BJ431957) Dictyostelium discoideum cDNA clone:ddv17l06, 3' ... 1356 0.0 1 (AU060706) Dictyostelium discoideum slug cDNA, clone SLB179. 1344 0.0 2 (BJ402554) Dictyostelium discoideum cDNA clone:dds17f11, 3' ... 1344 0.0 1 (BJ397913) Dictyostelium discoideum cDNA clone:dds10l05, 3' ... 1342 0.0 1 (BJ373859) Dictyostelium discoideum cDNA clone:ddc5h05, 3' e... 1342 0.0 1 (BJ429633) Dictyostelium discoideum cDNA clone:ddv4e11, 3' e... 1340 0.0 1
dna update	2009. 1.31
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q86A67) RecName: Full=Fructose-bisphosphate aldolase; ... 640 0.0 AL162506_11(AL162506\|pid:none) Arabidopsis thaliana DNA chromoso... 394 e-108 AF308587_1(AF308587\|pid:none) Fragaria x ananassa cytosolic aldo... 394 e-108 AM910994_614(AM910994\|pid:none) Plasmodium knowlesi strain H chr... 394 e-108 AF247063_1(AF247063\|pid:none) Plasmodium vivax WDK fructose 1,6-... 393 e-108 AY062566_1(AY062566\|pid:none) Arabidopsis thaliana fructose-bisp... 392 e-107 EF144942_1(EF144942\|pid:none) Populus trichocarpa clone WS0111_B... 392 e-107 AF247060_1(AF247060\|pid:none) Plasmodium chabaudi AS fructose 1,... 391 e-107 DQ874472_1(DQ874472\|pid:none) Plasmodium vivax strain A11 fructo... 389 e-107 A45610(A45610)fructose-bisphosphate aldolase (EC 4.1.2.13) 2 - P... 389 e-106
protein update	2009. 7. 4
PSORT	psg: 0.53 gvh: 0.40 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 48.0 %: cytoplasmic 36.0 %: nuclear 12.0 %: mitochondrial 4.0 %: peroxisomal >> prediction for SLB179 is cyt
5' end seq. ID	SLB179F
5' end seq.	>SLB179F.Seq CACACCATTATACTATATACTTTTTTTTTTAAAATGAATTCTAAATTTGCTGATGAATTA ATTGCAACTGCTAAAGCAATTGTAGCACCAGGTAAAGGTATTTTAGCAGCAGATGAATCA ACCAATACAATTGGAGCTCGTTTCAAAAAGATTAATTTAGAAAACAATGAAGAGAACAGA AGAGCCTACAGAGAACTTTTAATTGGTACTGGTAATGGTGTTAACGAATTTATTGGTGGT ATTATTTTATATGAAGAAACTCTTTACCAAAAGATGGCAGATGGTAGATTATTCACAGAT GTTTTAAGAGAACAAAAGATTCACATTGGTATTAAAGTTGATAAGGGTGTTGTACCAATT CCAGGTACCGATGGTGAAACCTCAACCCAAGGTTTAGATGGTCTTGCAGAGCGTTGTAAG AAATACTATGAAGCAGGTGCACGTTTCGCAAAATGGAGAGCAGTCTTAAAGATTGATCTT GCCAAGAATTGTCCATCCCAATTATCAATCACTGAAAATGCACACACATTAGCTCGTTAT GCTGCAATTTGTCAAGAGAATGGTTTGGTCCCAATCGTCGAACCAGAAATCTTAATGGAT GGTAATCACACTGTCGAGCAATCTGCTGAAGTCACTGAAAAAGTTTTAGCTGCAGTTTTC AAAGCACTCAATGACCATCATATCTTATTAGAAGGTGCCTTATTAAAA----------
Length of 5' end seq.	708
3' end seq. ID	SLB179Z
3' end seq.	>SLB179Z.Seq ----------AATACTATGAAGCAGGTGCACGTTTCGCAAAATGGAGAGCAGTCTTAAAG ATTGATCTTGCCAAGAATTGTCCATCCCAATTATCAATCACTGAAAATGCACACACATTA GCTCGTTATGCTGCAATTTGTCAAGAGAATGGTTTGGTCCCAATCGTCGAACCAGAAATC TTAATGGATGGTAATCACACTGTCGAGCAATCTGCTGAAGTCACTGAAAAAGTTTTAGCT GCAGTTTTCAAAGCACTCAATGACCATCATATCTTATTAGAAGGTGCCTTATTAAAACCA AATATGGTCGTCAATGGTACCGACTGTCCAATCAAAGCCACCTCTGAACAAATTGGTAAA TTCACCGTCCGTACCCTTCAACGTACTGTTCCACCAGCTCTTACTGGTGTTGTTTTCTTA TCTGGTGGTCAAACTGAAATTGAAGCCACTGCAAACTTAAACGCTATGAATGTCTTACCA AATCGTCCATGGGCTCTCTCTTTCTCATACGGTCGTGCCTTACAGGCCTCTGTCATCTCC ACTTGGAAAGGTGAATCTGCCAACGTTGAAGCTGCTCGTAAAGTTTATTTACATCGTGCC AAGTGTAACTCTCTTGCTCAACTCGGTAAATACACTGGTGAGGAATCAACTGGTTCAGCA TCTGAATCATTATATGTAAAAGATTACAAATTTTAAATATATAAAATAAATATCTAAACA TTNNNNAAATAATAATAATAATAATAATAATTTATTAAAATTTA
Length of 3' end seq.	754
Connected seq. ID	SLB179P
Connected seq.	>SLB179P.Seq CACACCATTATACTATATACTTTTTTTTTTAAAATGAATTCTAAATTTGCTGATGAATTA ATTGCAACTGCTAAAGCAATTGTAGCACCAGGTAAAGGTATTTTAGCAGCAGATGAATCA ACCAATACAATTGGAGCTCGTTTCAAAAAGATTAATTTAGAAAACAATGAAGAGAACAGA AGAGCCTACAGAGAACTTTTAATTGGTACTGGTAATGGTGTTAACGAATTTATTGGTGGT ATTATTTTATATGAAGAAACTCTTTACCAAAAGATGGCAGATGGTAGATTATTCACAGAT GTTTTAAGAGAACAAAAGATTCACATTGGTATTAAAGTTGATAAGGGTGTTGTACCAATT CCAGGTACCGATGGTGAAACCTCAACCCAAGGTTTAGATGGTCTTGCAGAGCGTTGTAAG AAATACTATGAAGCAGGTGCACGTTTCGCAAAATGGAGAGCAGTCTTAAAGATTGATCTT GCCAAGAATTGTCCATCCCAATTATCAATCACTGAAAATGCACACACATTAGCTCGTTAT GCTGCAATTTGTCAAGAGAATGGTTTGGTCCCAATCGTCGAACCAGAAATCTTAATGGAT GGTAATCACACTGTCGAGCAATCTGCTGAAGTCACTGAAAAAGTTTTAGCTGCAGTTTTC AAAGCACTCAATGACCATCATATCTTATTAGAAGGTGCCTTATTAAAA----------AA TACTATGAAGCAGGTGCACGTTTCGCAAAATGGAGAGCAGTCTTAAAGATTGATCTTGCC AAGAATTGTCCATCCCAATTATCAATCACTGAAAATGCACACACATTAGCTCGTTATGCT GCAATTTGTCAAGAGAATGGTTTGGTCCCAATCGTCGAACCAGAAATCTTAATGGATGGT AATCACACTGTCGAGCAATCTGCTGAAGTCACTGAAAAAGTTTTAGCTGCAGTTTTCAAA GCACTCAATGACCATCATATCTTATTAGAAGGTGCCTTATTAAAACCAAATATGGTCGTC AATGGTACCGACTGTCCAATCAAAGCCACCTCTGAACAAATTGGTAAATTCACCGTCCGT ACCCTTCAACGTACTGTTCCACCAGCTCTTACTGGTGTTGTTTTCTTATCTGGTGGTCAA ACTGAAATTGAAGCCACTGCAAACTTAAACGCTATGAATGTCTTACCAAATCGTCCATGG GCTCTCTCTTTCTCATACGGTCGTGCCTTACAGGCCTCTGTCATCTCCACTTGGAAAGGT GAATCTGCCAACGTTGAAGCTGCTCGTAAAGTTTATTTACATCGTGCCAAGTGTAACTCT CTTGCTCAACTCGGTAAATACACTGGTGAGGAATCAACTGGTTCAGCATCTGAATCATTA TATGTAAAAGATTACAAATTTTAAATATATAAAATAAATATCTAAACATTNNNNAAATAA TAATAATAATAATAATAATTTATTAAAATTTA
Length of connected seq.	1462
Full length Seq ID	SLB179E
Full length Seq.	>SLB179E.Seq CACACCATTATACTATATACTTTTTTTTTTAAAATGAATTCTAAATTTGCTGATGAATTA ATTGCAACTGCTAAAGCAATTGTAGCACCAGGTAAAGGTATTTTAGCAGCAGATGAATCA ACCAATACAATTGGAGCTCGTTTCAAAAAGATTAATTTAGAAAACAATGAAGAGAACAGA AGAGCCTACAGAGAACTTTTAATTGGTACTGGTAATGGTGTTAACGAATTTATTGGTGGT ATTATTTTATATGAAGAAACTCTTTACCAAAAGATGGCAGATGGTAGATTATTCACAGAT GTTTTAAGAGAACAAAAGATTCACATTGGTATTAAAGTTGATAAGGGTGTTGTACCAATT CCAGGTACCGATGGTGAAACCTCAACCCAAGGTTTAGATGGTCTTGCAGAGCGTTGTAAG AAATACTATGAAGCAGGTGCACGTTTCGCAAAATGGAGAGCAGTCTTAAAGATTGATCTT GCCAAGAATTGTCCATCCCAATTATCAATCACTGAAAATGCACACACATTAGCTCGTTAT GCTGCAATTTGTCAAGAGAATGGTTTGGTCCCAATCGTCGAACCAGAAATCTTAATGGAT GGTAATCACACTGTCGAGCAATCTGCTGAAGTCACTGAAAAAGTTTTAGCTGCAGTTTTC AAAGCACTCAATGACCATCATATCTTATTAGAAGGTGCCTTATTAAAACCAAATATGGTC GTCAATGGTACCGACTGTCCAATCAAAGCCACCTCTGAACAAATTGGTAAATTCACCGTC CGTACCCTTCAACGTACTGTTCCACCAGCTCTTACTGGTGTTGTTTTCTTATCTGGTGGT CAAACTGAAATTGAAGCCACTGCAAACTTAAACGCTATGAATGTCTTACCAAATCGTCCA TGGGCTCTCTCTTTCTCATACGGTCGTGCCTTACAGGCCTCTGTCATCTCCACTTGGAAA GGTGAATCTGCCAACGTTGAAGCTGCTCGTAAAGTTTATTTACATCGTGCCAAGTGTAAC TCTCTTGCTCAACTCGGTAAATACACTGGTGAGGAATCAACTGGTTCAGCATCTGAATCA TTATATGTAAAAGATTACAAATTTTAAATATATAAAATAAATATCTAAACATTNNNNAAA TAATAATAATAATAATAATAATTTATTAAAATTTA
Length of full length seq.	1175

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas