SLB166
Library SL
(Link to library)
Clone ID SLB166
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16381-1
Original site URL
Representative seq. ID SLB166Z
(Link to Original site)
Representative DNA sequence
>SLB166 (SLB166Q) /CSM/SL/SLB1-C/SLB166Q.Seq.d/
XXXXXXXXXXCAGAATCATTTGTGTAAAACCAACTTGTGATAATACTCGTTGTCCTCCAA
ATTACCATTGCATATGTGGTGATAAAATTGATGGTGTAAAATGTGTTCCAGATTGTAAGA
AAGCAAGTTGTGATGATGTCGAATGTCCAGATTTCCATAGCTGTGTTGAAAGACGTGGTG
GTATCTTAAGTTGTGAATTTGATCCACCAAGACAACCAAGATCCCTTGATTGGGCTGAAA
ATGAAAATGATGATCGTGACTATGATGATCGTGACTATGATGATGATGAATATGATGGTG
ATTATGATGGCCGTGACGGTGACTATGATGGTGATTATGATGGTGATTATGATGATGACA
ATTATTATGGTGATGATGACTATGATAATGATTGGGACAATGATAATGATTGGGGTAATG
ATTGGGATAATGATTGGGACAATGAAGATGGTGATAATTGGAATGATGATGACTTCCAAG
ATGCAAATGATGAATGGGACTATTAAGCCATTAATTTTTTAAAAAAAAATAATAATAATA
TTAATACAAATAATTTTTTAAAAAAAAAAAAAGAAAAAAAAAAAAAAGAAAAAAAAAAAA
AAA
sequence update 1998. 3.27
Translated Amino Acid sequence
---RIICVKPTCDNTRCPPNYHCICGDKIDGVKCVPDCKKASCDDVECPDFHSCVERRGG
ILSCEFDPPRQPRSLDWAENENDDRDYDDRDYDDDEYDGDYDGRDGDYDGDYDGDYDDDN
YYGDDDYDNDWDNDNDWGNDWDNDWDNEDGDNWNDDDFQDANDEWDY*ainflkknnnni
ntnnflkkkkekkkkekkkk


Translated Amino Acid sequence (All Frames)
Frame A:
---RIICVKPTCDNTRCPPNYHCICGDKIDGVKCVPDCKKASCDDVECPDFHSCVERRGG
ILSCEFDPPRQPRSLDWAENENDDRDYDDRDYDDDEYDGDYDGRDGDYDGDYDGDYDDDN
YYGDDDYDNDWDNDNDWGNDWDNDWDNEDGDNWNDDDFQDANDEWDY*ainflkknnnni
ntnnflkkkkekkkkekkkk


Frame B:
---esfv*nqlviilvvlqitiayvviklmv*nvfqivrkqvvmmsnvqisiavlkdvvv
s*vvnlihqdnqdpliglkmkmmivtmmivtmmmmnmmvimmavtvtmmvimmvimmmti
imvmmtmimigtmimigvmigimigtmkmviigmmmtskmqmmngtikplif*kkiiiil
iqiif*kkkkkkkkkkkkkk


Frame C:
---nhlcktnl**yslssklplhmw**n*wckmcsrl*eskl**crmsrfp*lc*ktwwy
lkl*i*stkttkip*lg*k*k**s*l**s*l****i*w*l*wp*r*l*w*l*w*l***ql
lw***l***lgq***lg**lg**lgq*rw**le***lprck**mgllsh*ffkkk***y*
yk*ffkkkkrkkkkrkkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLB166 (SLB166Q) /CSM/SL/SLB1-C/SLB166Q.Seq.d/ 444 e-124
SLH820 (SLH820Q) /CSM/SL/SLH8-A/SLH820Q.Seq.d/ 428 e-119
SLH722 (SLH722Q) /CSM/SL/SLH7-A/SLH722Q.Seq.d/ 428 e-119
SLH522 (SLH522Q) /CSM/SL/SLH5-A/SLH522Q.Seq.d/ 428 e-119
SLH221 (SLH221Q) /CSM/SL/SLH2-A/SLH221Q.Seq.d/ 428 e-119
SLG753 (SLG753Q) /CSM/SL/SLG7-C/SLG753Q.Seq.d/ 428 e-119
SLG628 (SLG628Q) /CSM/SL/SLG6-B/SLG628Q.Seq.d/ 428 e-119
SLE585 (SLE585Q) /CSM/SL/SLE5-D/SLE585Q.Seq.d/ 428 e-119
SLE255 (SLE255Q) /CSM/SL/SLE2-C/SLE255Q.Seq.d/ 428 e-119
SLE191 (SLE191Q) /CSM/SL/SLE1-D/SLE191Q.Seq.d/ 428 e-119

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU033558) Dictyostelium discoideum slug cDNA, clone SLB166. 446 e-158 2
(BJ345018) Dictyostelium discoideum cDNA clone:dda21h07, 3' ... 430 e-153 2
(AU039233) Dictyostelium discoideum slug cDNA, clone SLH221. 430 e-153 2
(AU039309) Dictyostelium discoideum slug cDNA, clone SLH522. 430 e-153 2
(AU033720) Dictyostelium discoideum slug cDNA, clone SLB355. 430 e-153 2
(BJ373553) Dictyostelium discoideum cDNA clone:ddc3k16, 3' e... 430 e-153 2
(BJ403029) Dictyostelium discoideum cDNA clone:dds18g06, 3' ... 430 e-153 2
(BJ402024) Dictyostelium discoideum cDNA clone:dds20o04, 3' ... 430 e-153 2
(BJ375357) Dictyostelium discoideum cDNA clone:ddc18m08, 3' ... 430 e-153 2
(AU060078) Dictyostelium discoideum slug cDNA, clone SLA139. 430 e-153 2
dna update 2009. 1.31
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor... 175 1e-42
S72639_1(S72639|pid:none) PspB=prespore-specific gene {5' region... 70 6e-11
(P54704) RecName: Full=Spore coat protein SP85; AltName: Full=Ce... 69 1e-10
AK126919_1(AK126919|pid:none) Homo sapiens cDNA FLJ44971 fis, cl... 42 0.010
AK091762_1(AK091762|pid:none) Homo sapiens cDNA FLJ34443 fis, cl... 42 0.010
AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom... 40 0.037
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -... 40 0.063
(P14328) RecName: Full=Spore coat protein SP96; &AC117075_49(AC... 40 0.063
(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor; 39 0.14
BC131709_1(BC131709|pid:none) Homo sapiens cysteine-rich PAK1 in... 39 0.14
protein update 2009. 5.31
PSORT

psg: 0.55 gvh: 0.42 alm: 0.57 top: 0.53 tms: 0.00 mit: 0.31 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: mitochondrial
28.0 %: cytoplasmic
20.0 %: nuclear
8.0 %: cytoskeletal
8.0 %: vesicles of secretory system

>> prediction for SLB166 is mit

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLB166Z
3' end seq.
>SLB166Z.Seq
----------CAGAATCATTTGTGTAAAACCAACTTGTGATAATACTCGTTGTCCTCCAA
ATTACCATTGCATATGTGGTGATAAAATTGATGGTGTAAAATGTGTTCCAGATTGTAAGA
AAGCAAGTTGTGATGATGTCGAATGTCCAGATTTCCATAGCTGTGTTGAAAGACGTGGTG
GTATCTTAAGTTGTGAATTTGATCCACCAAGACAACCAAGATCCCTTGATTGGGCTGAAA
ATGAAAATGATGATCGTGACTATGATGATCGTGACTATGATGATGATGAATATGATGGTG
ATTATGATGGCCGTGACGGTGACTATGATGGTGATTATGATGGTGATTATGATGATGACA
ATTATTATGGTGATGATGACTATGATAATGATTGGGACAATGATAATGATTGGGGTAATG
ATTGGGATAATGATTGGGACAATGAAGATGGTGATAATTGGAATGATGATGACTTCCAAG
ATGCAAATGATGAATGGGACTATTAAGCCATTAATTTTTTAAAAAAAAATAATAATAATA
TTAATACAAATAATTTTTTAAAAAAAAAAAAAGAAAAAAAAAAAAAAGAAAAAAAAAAAA
AAA
Length of 3' end seq. 593
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -