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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLB162
Library SL
(Link to library)
Clone ID SLB162
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16441-1
Original site URL
Representative seq. ID SLB162E
(Link to Original site)
Representative DNA sequence 
>SLB162 (SLB162Q) /CSM/SL/SLB1-C/SLB162Q.Seq.d/
CGATAAAACCAGAGGTTATGGTCCAATCTATTCCATTGCTAGTGCACCAGGTTTAATTCT
TGCCACTGGTAATGCCAATCCAGCTTTATCATCCGATCCAATCAAAAGTAGAGTTAAAAC
AGTTTTATCAACCGATAATGGTCAAACATGGTCTANANNCTTTGATGAAGGTACCATCTA
TGAATTTGGTAACTATGGTTCTTCAATTATTTTCGCAACTGCTATGAACGATACAAAGAC
CTTTTACTATACCTTTGGTCTTGATCAAAAACCAATTGCAATCAATATGACATTAAAATC
AAATGTTGATGTCATCAATATCATTACAAGTCCAAGAAATGATGGAAATAAATTCATCTT
TTTAGTAGAGGATGAATATGATATCGGTCAAATGATTGGTGTTGATTTAACAAATGTATT
GCCATCTCCTTGCGATGATTCCTCAATGCAATCTTATACCACTCGTTGTATTTTAGGTGA
AAAAACAACTTATAGAACTGTTAAACCAAATACCAATTGTTATATGACCCAACAAGCACA
AATTTCAAATAAATATTGTGAATGTACAGTCGAAGATTTTGAATGTGATATTGGTTACGA
AAGTGCAGACGATAGCAGTTCCGATAATGATGGTTCTACCTCTGGTATTCCATCTGGATC
TTCAGAACAATTGAATTGTCGTAAATCAATTGCTTCACAATATGTTCCAATCACTGAAGA
AAATTGTACACCAGGTCAAACCTATATCAAATCAAAAGGTTTCAGAAGAGTCGCTGCCAC
ACAATGTGTAGGTGGTGTTAATGCAACTTATTCACCAGAGATTGTCATGTGTCCATCAAA
AAATTCTTCAAGTGGTGGCAAAGGTTGGATCGCTGGTGTTGTTATTGCTATTCTTGCTTT
AGCTGGTCTTGGTGGTTTTGGTTTCTACGTTTTTAAGAATCCAGATTTCAAACAAAAATT
ATTAAAAATGGTTGGTTTTTCAAAGGTCGGTCCAAAATATAGTGTTATCGGTATTAAACC
AAACTCATTAGCTGATGATGAATTTGGTATTGAAGATGATGATGCTCAAATTTTAAATGA
TAATGATTTACAAGATAACGAAGATTTTTAAAAAAAAAAAAAAAA
sequence update 1999. 6.18
Translated Amino Acid sequence 
DKTRGYGPIYSIASAPGLILATGNANPALSSDPIKSRVKTVLSTDNGQTWSXXFDEGTIY
EFGNYGSSIIFATAMNDTKTFYYTFGLDQKPIAINMTLKSNVDVINIITSPRNDGNKFIF
LVEDEYDIGQMIGVDLTNVLPSPCDDSSMQSYTTRCILGEKTTYRTVKPNTNCYMTQQAQ
ISNKYCECTVEDFECDIGYESADDSSSDNDGSTSGIPSGSSEQLNCRKSIASQYVPITEE
NCTPGQTYIKSKGFRRVAATQCVGGVNATYSPEIVMCPSKNSSSGGKGWIAGVVIAILAL
AGLGGFGFYVFKNPDFKQKLLKMVGFSKVGPKYSVIGIKPNSLADDEFGIEDDDAQILND
NDLQDNEDF*kkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
r*nqrlwsnlfhc*ctrfnschw*cqssfiirsnqk*s*nsfinr*wsnmvxxl**ryhl
*iw*lwffnyfrncyerykdlllylws*sktncnqydikikc*chqyhykskk*wk*ihl
fsrg*i*yrsndwc*fnkciaislr*flnailyhslyfr*knnl*nc*tkyqllydptst
nfk*il*mysrrf*m*ywlrkcrr*qfr**wfylwysiwifrtiels*incfticsnh*r
klytrsnlyqikrfqksrchtmcrwc*cnlftrdchvsikkffkwwqrldrwccycyscf
swswwfwflrf*esrfqtkiikngwffkgrski*cyry*tklis***iwy*r**csnfk*
**ftr*rrflkkkkk


Frame B:
DKTRGYGPIYSIASAPGLILATGNANPALSSDPIKSRVKTVLSTDNGQTWSXXFDEGTIY
EFGNYGSSIIFATAMNDTKTFYYTFGLDQKPIAINMTLKSNVDVINIITSPRNDGNKFIF
LVEDEYDIGQMIGVDLTNVLPSPCDDSSMQSYTTRCILGEKTTYRTVKPNTNCYMTQQAQ
ISNKYCECTVEDFECDIGYESADDSSSDNDGSTSGIPSGSSEQLNCRKSIASQYVPITEE
NCTPGQTYIKSKGFRRVAATQCVGGVNATYSPEIVMCPSKNSSSGGKGWIAGVVIAILAL
AGLGGFGFYVFKNPDFKQKLLKMVGFSKVGPKYSVIGIKPNSLADDEFGIEDDDAQILND
NDLQDNEDF*kkkk


Frame C:
ikpevmvqsipllvhqv*flplvmpiqlyhpiqskvelkqfyqpimvkhglxxlmkvpsm
nlvtmvlqlfsqll*tiqrpftiplvliknqlqsi*h*nqmlmssislqvqemmeinssf
**rmnmisvk*lvli*qmychllamipqcnliplvvf*vkkqliellnqipivi*pnkhk
fqinivnvqskilnvilvtkvqtiavpimmvlplvfhldlqnn*ivvnqllhnmfqslkk
ivhqvkpisnqkvseeslphnv*vvlmqlihqrlscvhqkilqvvakvgslvllllfll*
lvlvvlvstflriqisnkny*kwlvfqrsvqnivlsvlnqth*lmmnlvlkmmmlkf*mi
miykitkifkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLB162 (SLB162Q) /CSM/SL/SLB1-C/SLB162Q.Seq.d/                       2181   0.0
AHL194 (AHL194Q) /CSM/AH/AHL1-D/AHL194Q.Seq.d/                       1586   0.0
VHQ426 (VHQ426Q) /CSM/VH/VHQ4-B/VHQ426Q.Seq.d/                       1566   0.0
VHB825 (VHB825Q) /CSM/VH/VHB8-B/VHB825Q.Seq.d/                       1548   0.0
VHC469 (VHC469Q) /CSM/VH/VHC4-C/VHC469Q.Seq.d/                       1544   0.0
VHB464 (VHB464Q) /CSM/VH/VHB4-C/VHB464Q.Seq.d/                       1536   0.0
VHK292 (VHK292Q) /CSM/VH/VHK2-D/VHK292Q.Seq.d/                       1534   0.0
VHA856 (VHA856Q) /CSM/VH/VHA8-C/VHA856Q.Seq.d/                       1534   0.0
CHI226 (CHI226Q) /CSM/CH/CHI2-B/CHI226Q.Seq.d/                       1530   0.0
AHJ133 (AHJ133Q) /CSM/AH/AHJ1-B/AHJ133Q.Seq.d/                       1530   0.0
own update 2005. 1. 1
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ354523) Dictyostelium discoideum cDNA clone:dda53k23, 3' ...  1586   0.0    1
(BJ446610) Dictyostelium discoideum cDNA clone:ddv63d08, 3' ...  1536   0.0    2
(BJ437266) Dictyostelium discoideum cDNA clone:ddv33p16, 3' ...  1536   0.0    1
(BJ436944) Dictyostelium discoideum cDNA clone:ddv32p14, 3' ...  1534   0.0    1
(BJ437433) Dictyostelium discoideum cDNA clone:ddv34b08, 3' ...  1530   0.0    2
(BJ380467) Dictyostelium discoideum cDNA clone:ddc38c08, 3' ...  1530   0.0    1
(BJ353174) Dictyostelium discoideum cDNA clone:dda49a09, 3' ...  1530   0.0    1
(BJ437871) Dictyostelium discoideum cDNA clone:ddv35j18, 3' ...  1524   0.0    2
(BJ379767) Dictyostelium discoideum cDNA clone:ddc35m23, 3' ...  1485   0.0    3
(BJ443077) Dictyostelium discoideum cDNA clone:ddv51g24, 3' ...  1483   0.0    3
dna update 2009. 1.31
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159157_1(AF159157|pid:none) Hydra vulgaris head-activator bind...   110   1e-22
AE014187_491(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...   102   2e-20
(Q95209) RecName: Full=Sortilin-related receptor; AltName: Full=...    95   5e-18
(Q9UPU3) RecName: Full=VPS10 domain-containing receptor SorCS3; ...    91   6e-17
AK155045_1(AK155045|pid:none) Mus musculus NOD-derived CD11c +ve...    87   8e-16
(O88307) RecName: Full=Sortilin-related receptor; AltName: Full=...    87   8e-16
AB015790_1(AB015790|pid:none) Mus musculus mRNA for LR11, comple...    87   8e-16
AK147303_1(AK147303|pid:none) Mus musculus adult male brain UNDE...    87   8e-16
FM992688_1151(FM992688|pid:none) Candida dubliniensis CD36 chrom...    86   2e-15
AB093294_1(AB093294|pid:none) Mus musculus mRNA for mKIAA1329 pr...    85   5e-15
protein update 2009. 7. 4
PSORT 

 psg: 0.90  gvh: 0.61  alm: 0.22  top: 0.67  tms: 0.07  mit: 0.21  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.06  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SLB162 is nuc
5' end seq. ID SLB162F
5' end seq. 
>SLB162F.Seq
CGATAAAACCAGAGGTTATGGTCCAATCTATTCCATTGCTAGTGCACCAGGTTTAATTCT
TGCCACTGGTAATGCCAATCCAGCTTTATCATCCGATCCAATCAAAAGTAGAGTTAAAAC
AGTTTTATCAACCGATAATGGTCAAACATGGTCTANANNCTTTGATGAAGGTACCATCTA
TGAATTTGGTAACTATGGTTCTTCAATTATTTTCGCAACTGCTATGAACGATACAAAGAC
CTTTTACTATACCTTTGGTCTTGATCAAAAACCAATTGCAATCAATATGACATTAAAATC
AAATGTTGATGTCATCAATATCATTACAAGTCCAAGAAATGATGGAAATAAATTCATCTT
TTTAGTAGAGGATGAATATGATATCGGTCAAATGATTGGTGTTGATTTAACAAATGTATT
GCCATCTCCTTGCGATGATTCCTCAATGCAATCTTATACCACTCGTTGTATTTTAGGTGA
AAAAACAACTTATAGAACTGTTAAACCAAATACCAATTGTTATATGACCCAACAAGCACA
AATTTCAAATAAATATTGTGAATGTACAGTCGAAGATTTTGAATGTGATATTGGTTACGA
AAGTGCAGACGATAGCAGTTCCGATAATGATGGTTCTACCTCTGGTATTCCATCTGGATC
TTCAGAACAATTGAAT----------
Length of 5' end seq. 676
3' end seq. ID SLB162Z
3' end seq. 
>SLB162Z.Seq
----------TAAACCAAATACCAATTGTTATATGACCCAACAAGCACAAATTTCAAATA
AATATTGTGAATGTACAGTCGAAGATTTTGAATGTGATATTGGTTACGAAAGTGCAGACG
ATAGCAGTTCCGATAATGATGGTTCTACCTCTGGTATTCCATCTGGATCTTCAGAACAAT
TGAATTGTCGTAAATCAATTGCTTCACAATATGTTCCAATCACTGAAGAAAATTGTACAC
CAGGTCAAACCTATATCAAATCAAAAGGTTTCAGAAGAGTCGCTGCCACACAATGTGTAG
GTGGTGTTAATGCAACTTATTCACCAGAGATTGTCATGTGTCCATCAAAAAATTCTTCAA
GTGGTGGCAAAGGTTGGATCGCTGGTGTTGTTATTGCTATTCTTGCTTTAGCTGGTCTTG
GTGGTTTTGGTTTCTACGTTTTTAAGAATCCAGATTTCAAACAAAAATTATTAAAAATGG
TTGGTTTTTCAAAGGTCGGTCCAAAATATAGTGTTATCGGTATTAAACCAAACTCATTAG
CTGATGATGAATTTGGTATTGAAGATGATGATGCTCAAATTTTAAATGATAATGATTTAC
AAGATAACGAAGATTTTTAAAAAAAAAAAAAAAA
Length of 3' end seq. 624
Connected seq. ID SLB162P
Connected seq. 
>SLB162P.Seq
CGATAAAACCAGAGGTTATGGTCCAATCTATTCCATTGCTAGTGCACCAGGTTTAATTCT
TGCCACTGGTAATGCCAATCCAGCTTTATCATCCGATCCAATCAAAAGTAGAGTTAAAAC
AGTTTTATCAACCGATAATGGTCAAACATGGTCTANANNCTTTGATGAAGGTACCATCTA
TGAATTTGGTAACTATGGTTCTTCAATTATTTTCGCAACTGCTATGAACGATACAAAGAC
CTTTTACTATACCTTTGGTCTTGATCAAAAACCAATTGCAATCAATATGACATTAAAATC
AAATGTTGATGTCATCAATATCATTACAAGTCCAAGAAATGATGGAAATAAATTCATCTT
TTTAGTAGAGGATGAATATGATATCGGTCAAATGATTGGTGTTGATTTAACAAATGTATT
GCCATCTCCTTGCGATGATTCCTCAATGCAATCTTATACCACTCGTTGTATTTTAGGTGA
AAAAACAACTTATAGAACTGTTAAACCAAATACCAATTGTTATATGACCCAACAAGCACA
AATTTCAAATAAATATTGTGAATGTACAGTCGAAGATTTTGAATGTGATATTGGTTACGA
AAGTGCAGACGATAGCAGTTCCGATAATGATGGTTCTACCTCTGGTATTCCATCTGGATC
TTCAGAACAATTGAAT----------TAAACCAAATACCAATTGTTATATGACCCAACAA
GCACAAATTTCAAATAAATATTGTGAATGTACAGTCGAAGATTTTGAATGTGATATTGGT
TACGAAAGTGCAGACGATAGCAGTTCCGATAATGATGGTTCTACCTCTGGTATTCCATCT
GGATCTTCAGAACAATTGAATTGTCGTAAATCAATTGCTTCACAATATGTTCCAATCACT
GAAGAAAATTGTACACCAGGTCAAACCTATATCAAATCAAAAGGTTTCAGAAGAGTCGCT
GCCACACAATGTGTAGGTGGTGTTAATGCAACTTATTCACCAGAGATTGTCATGTGTCCA
TCAAAAAATTCTTCAAGTGGTGGCAAAGGTTGGATCGCTGGTGTTGTTATTGCTATTCTT
GCTTTAGCTGGTCTTGGTGGTTTTGGTTTCTACGTTTTTAAGAATCCAGATTTCAAACAA
AAATTATTAAAAATGGTTGGTTTTTCAAAGGTCGGTCCAAAATATAGTGTTATCGGTATT
AAACCAAACTCATTAGCTGATGATGAATTTGGTATTGAAGATGATGATGCTCAAATTTTA
AATGATAATGATTTACAAGATAACGAAGATTTTTAAAAAAAAAAAAAAAA
Length of connected seq. 1300
Full length Seq ID SLB162E
Full length Seq. 
>SLB162E.Seq
CGATAAAACCAGAGGTTATGGTCCAATCTATTCCATTGCTAGTGCACCAGGTTTAATTCT
TGCCACTGGTAATGCCAATCCAGCTTTATCATCCGATCCAATCAAAAGTAGAGTTAAAAC
AGTTTTATCAACCGATAATGGTCAAACATGGTCTANANNCTTTGATGAAGGTACCATCTA
TGAATTTGGTAACTATGGTTCTTCAATTATTTTCGCAACTGCTATGAACGATACAAAGAC
CTTTTACTATACCTTTGGTCTTGATCAAAAACCAATTGCAATCAATATGACATTAAAATC
AAATGTTGATGTCATCAATATCATTACAAGTCCAAGAAATGATGGAAATAAATTCATCTT
TTTAGTAGAGGATGAATATGATATCGGTCAAATGATTGGTGTTGATTTAACAAATGTATT
GCCATCTCCTTGCGATGATTCCTCAATGCAATCTTATACCACTCGTTGTATTTTAGGTGA
AAAAACAACTTATAGAACTGTTAAACCAAATACCAATTGTTATATGACCCAACAAGCACA
AATTTCAAATAAATATTGTGAATGTACAGTCGAAGATTTTGAATGTGATATTGGTTACGA
AAGTGCAGACGATAGCAGTTCCGATAATGATGGTTCTACCTCTGGTATTCCATCTGGATC
TTCAGAACAATTGAATTGTCGTAAATCAATTGCTTCACAATATGTTCCAATCACTGAAGA
AAATTGTACACCAGGTCAAACCTATATCAAATCAAAAGGTTTCAGAAGAGTCGCTGCCAC
ACAATGTGTAGGTGGTGTTAATGCAACTTATTCACCAGAGATTGTCATGTGTCCATCAAA
AAATTCTTCAAGTGGTGGCAAAGGTTGGATCGCTGGTGTTGTTATTGCTATTCTTGCTTT
AGCTGGTCTTGGTGGTTTTGGTTTCTACGTTTTTAAGAATCCAGATTTCAAACAAAAATT
ATTAAAAATGGTTGGTTTTTCAAAGGTCGGTCCAAAATATAGTGTTATCGGTATTAAACC
AAACTCATTAGCTGATGATGAATTTGGTATTGAAGATGATGATGCTCAAATTTTAAATGA
TAATGATTTACAAGATAACGAAGATTTTTAAAAAAAAAAAAAAAA
Length of full length seq. 1125