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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLB157
Library SL
(Link to library)
Clone ID SLB157
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SLB157Z
(Link to Original site)
Representative DNA sequence 
>SLB157 (SLB157Q) /CSM/SL/SLB1-C/SLB157Q.Seq.d/
XXXXXXXXXXCGTGATCTTACTGATTACATGATGAAAATCTTAACTGAACGTGGTTACTC
ATTCACCACCACTGCTGAAAGAGAAATCGTCAGAGATATCAAAGAAAAATTAGCCTACGT
CGCCCTCGACTTTGAAGCTGAAATGCAAACTGCTGCCTCATCATCAGCCCTCGAAAAATC
ATACGAATTACCAGACGGTCAAGTCATCACCATCGGTAATGAACGTTTCCGTTGCCCAGA
AGCCCTCTTCCAACCATCATTCTTAGGTATGGAATCAGCTGGTATCCACGAAACCACCTA
TAACTCCATCATGAAATGTGATGTTGATATCCGTAAAGATTTATACGGTAATGTCGTCTT
ATCTGGTGGTACAACTATGTTCCCAGGTATTGCTGATCGTATGAACAAAGAATTAACTGC
TTTAGCCCCATCAACCATGAAAATTAAAATCATTGCTCCACCAGAACGTAAATACTCTGT
CTGGATTGGTGGATCTATCTTAGCTTCACTCTCAACTTTCCAACAAATGTGGATCTCCAA
AGAAGAATATGACGAATCAGGTCCATCAATTGTCCACAGAAAATGTTTCTAAACAATTAA
AACTAGTGATGAAAGTGCTTCTCACACAAACAAATATATTTAAATGTATAATAATAATAA
AATATAATTATTTTTAATGGTTGTTGATCTTTATCCGACTATCAAAAAAA
sequence update 1998. 3.27
Translated Amino Acid sequence 
---DLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSY
ELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLS
GGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKE
EYDESGPSIVHRKCF*tiktsdesashtnkyi*mynnnki*lflmvvdlyptikk
Translated Amino Acid sequence (All Frames) 
Frame A:
---villit**ks*lnvvthsppllkeksseiskkn*ptspstlklkckllphhqpsknh
tnyqtvksspsvmnvsvaqkpssnhhs*vwnqlvstkppitps*nvmlisvkiytvmssy
lvvqlcsqvlliv*tkn*ll*phqp*klksllhqnvntlsglvdls*lhsqlsnkcgspk
knmtnqvhqlstenvskqlklvmkvlltqtnifkciiiikynyf*wllifirlskk


Frame B:
---*sy*lhdenln*twllihhhc*krnrqryqrkislrrprl*s*nanccliisprkii
ritrrsshhhr**tfplprsplptiilrygiswyprnhl*lhhem*c*yp*rfir*crli
wwynyvpryc*syeqrincfspinhen*nhcstrt*ilcldwwiylsftlnfptnvdlqr
ri*rirsincpqkmflnn*n***kcfshkqiylnv****niiifngc*slsdyqk


Frame C:
---DLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSY
ELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLS
GGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKE
EYDESGPSIVHRKCF*tiktsdesashtnkyi*mynnnki*lflmvvdlyptikk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFO858 (VFO858Q) /CSM/VF/VFO8-C/VFO858Q.Seq.d/                       1231   0.0
VFL589 (VFL589Q) /CSM/VF/VFL5-D/VFL589Q.Seq.d/                       1231   0.0
VFJ616 (VFJ616Q) /CSM/VF/VFJ6-A/VFJ616Q.Seq.d/                       1231   0.0
VFI569 (VFI569Q) /CSM/VF/VFI5-C/VFI569Q.Seq.d/                       1231   0.0
VFI269 (VFI269Q) /CSM/VF/VFI2-C/VFI269Q.Seq.d/                       1231   0.0
VFE460 (VFE460Q) /CSM/VF/VFE4-C/VFE460Q.Seq.d/                       1231   0.0
VFE392 (VFE392Q) /CSM/VF/VFE3-D/VFE392Q.Seq.d/                       1231   0.0
VFE112 (VFE112Q) /CSM/VF/VFE1-A/VFE112Q.Seq.d/                       1231   0.0
VFD651 (VFD651Q) /CSM/VF/VFD6-C/VFD651Q.Seq.d/                       1231   0.0
VFC818 (VFC818Q) /CSM/VF/VFC8-A/VFC818Q.Seq.d/                       1231   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...  1231   0.0    1
(AU034474) Dictyostelium discoideum slug cDNA, clone SLC191.     1231   0.0    1
(AU033559) Dictyostelium discoideum slug cDNA, clone SLB167.     1231   0.0    1
(AU033550) Dictyostelium discoideum slug cDNA, clone SLB157.     1231   0.0    1
(BJ436244) Dictyostelium discoideum cDNA clone:ddv30d16, 3' ...  1231   0.0    1
(BJ434710) Dictyostelium discoideum cDNA clone:ddv24a23, 3' ...  1231   0.0    1
(BJ432412) Dictyostelium discoideum cDNA clone:ddv18i17, 3' ...  1231   0.0    1
(BJ432096) Dictyostelium discoideum cDNA clone:ddv17i18, 3' ...  1231   0.0    1
(BJ431094) Dictyostelium discoideum cDNA clone:ddv9h23, 3' e...  1231   0.0    1
(BJ431018) Dictyostelium discoideum cDNA clone:ddv9h16, 3' e...  1231   0.0    1
dna update 2009. 1.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54H30) RecName: Full=Major actin; AltName: Full=Actin-1; AltNa...   386   e-106
X03282_1(X03282|pid:none) dictyostelium discoideum gene for acti...   386   e-106
B23412(B23412)actin 12 - slime mold (Dictyostelium discoideum)        386   e-106
ATDO(A93223;A92871;S67999;A03004)actin - slime mold (Dictyosteli...   382   e-105
(Q553U6) RecName: Full=Putative actin-22;  &AC116305_3(AC116305|...   382   e-105
(P02576) RecName: Full=Actin, plasmodial isoform;  &ATFY(A29044;...   381   e-104
(P07829) RecName: Full=Actin-3; AltName: Full=Actin-3-sub 1;          379   e-104
AF508263_1(AF508263|pid:none) Pyrocystis lunula actin mRNA, comp...   379   e-104
AY615868_1(AY615868|pid:none) Amastigomonas marina actin gene, p...   375   e-103
AY294154_1(AY294154|pid:none) Thecamoeba similis actin mRNA, com...   375   e-103
protein update 2009. 5.31
PSORT 

 psg: 0.75  gvh: 0.41  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SLB157 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLB157Z
3' end seq. 
>SLB157Z.Seq
----------CGTGATCTTACTGATTACATGATGAAAATCTTAACTGAACGTGGTTACTC
ATTCACCACCACTGCTGAAAGAGAAATCGTCAGAGATATCAAAGAAAAATTAGCCTACGT
CGCCCTCGACTTTGAAGCTGAAATGCAAACTGCTGCCTCATCATCAGCCCTCGAAAAATC
ATACGAATTACCAGACGGTCAAGTCATCACCATCGGTAATGAACGTTTCCGTTGCCCAGA
AGCCCTCTTCCAACCATCATTCTTAGGTATGGAATCAGCTGGTATCCACGAAACCACCTA
TAACTCCATCATGAAATGTGATGTTGATATCCGTAAAGATTTATACGGTAATGTCGTCTT
ATCTGGTGGTACAACTATGTTCCCAGGTATTGCTGATCGTATGAACAAAGAATTAACTGC
TTTAGCCCCATCAACCATGAAAATTAAAATCATTGCTCCACCAGAACGTAAATACTCTGT
CTGGATTGGTGGATCTATCTTAGCTTCACTCTCAACTTTCCAACAAATGTGGATCTCCAA
AGAAGAATATGACGAATCAGGTCCATCAATTGTCCACAGAAAATGTTTCTAAACAATTAA
AACTAGTGATGAAAGTGCTTCTCACACAAACAAATATATTTAAATGTATAATAATAATAA
AATATAATTATTTTTAATGGTTGTTGATCTTTATCCGACTATCAAAAAAA
Length of 3' end seq. 700
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -