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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLB154
Library SL
(Link to library)
Clone ID SLB154
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U13315-1|Contig-U15540-1
Original site URL
Representative seq. ID SLB154P
(Link to Original site)
Representative DNA sequence 
>SLB154 (SLB154Q) /CSM/SL/SLB1-C/SLB154Q.Seq.d/
CTACCTGATTATTATTGTAAACATTTTTGGTGGATAAGTTCTAAAACAATGTTTACAATA
ATAATCTGGTTGTTGATCATTATAGTCATTTAAAAGTGAGGTTATTGAATCCAATGATTG
ACTTGCTCCAATTTGTTTTTGTTGTTGTAATGTTGGAAATGCTCTTATTAATGATGAAGA
TGATGAGGATGATGTCGATGAATTGGTTGTAGGTGGTGATATTGATGTTGATGTTTGTGA
TAATGATGATGAGGAGGATTGCTTAATCATTGGATTTGGTAAAATTTCTTTATACTTTTT
GGAATTTTGATTATTATTATTATAATTATTATTATCATCATNATAATANTAAGTGCTATT
TACATTATATCCTCTTATTGAAGAATTTGATGGAATTGGAGAAGTATTTTGTGTAGGTGA
TTGTACATTTTCATTTAAAAAAGTGACAGGAGAAGCTCTTGCTGACCCGGGGTTTGGTAA
AGAAAATCCTGATCCACTCGATGTATTTCTATTAACACCATCATTATTTAAAAATGATTT
CTGATGAGAAGTTGATAATGGTGGGGTTGTTTGTTTTTGATCAAAGGATCTTATTGAACT
AGAATTTATTAAATCTGCCATAAXXXXXXXXXXTTTCTCTTCAAGTCATTTTAATTTAAT
TTAATTTAATTTAATTTAATTTAATTTATTTTATTTTATTTTATTTGAAAGGGTGGTATT
ACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGTTTACTATATTATTTCCTAAATA
CTTTTTTTTTTTTAAAAAAAAAAGTAATAATTAAAATGAGTGATTAAATATTTAAAAAAA
AA
sequence update 1998.12.24
Translated Amino Acid sequence 
yliiivnifgg*vlkqclq**sgc*sl*sfkseviesnd*lapicfcccnvgnalinded
deddvdelvvggdidvdvcdnddeedcliigfgkislyflef*llll*lllssx*x*vlf
tlyplieefdgigevfcvgdctfsfkkvtgealadpgfgkenpdpldvflltpslfkndf
**evdnggvvcf*SKDLIELEFIKSAI---

---FSSSHFNLI*fnli*fnlfyfilfervvllffffffffff*ftilfpkyffffkkks
nn*ne*lni*kk
Translated Amino Acid sequence (All Frames) 
Frame A:
lpdyyckhfwwissktmftiiiwlliiivi*k*gy*iq*ltcsnlflll*cwkcsy***r
**g*cr*igcrw*y*c*cl*****ggllnhwiw*nffilfgiliiiiiiiiiixiixsai
yiissy*ri*wnwrsilcr*lyifi*ksdrrssc*pgvw*rks*strcisintiii*k*f
lmrs**wwgclflikgsy*triy*ich---

---flfksf*fnli*fnli*filfyfi*kggitfffffffffflvyyiis*ilfff*kkk
**lk*vikylkk

Frame B:
yliiivnifgg*vlkqclq**sgc*sl*sfkseviesnd*lapicfcccnvgnalinded
deddvdelvvggdidvdvcdnddeedcliigfgkislyflef*llll*lllssx*x*vlf
tlyplieefdgigevfcvgdctfsfkkvtgealadpgfgkenpdpldvflltpslfkndf
**evdnggvvcf*SKDLIELEFIKSAI---

---FSSSHFNLI*fnli*fnlfyfilfervvllffffffffff*ftilfpkyffffkkks
nn*ne*lni*kk

Frame C:
t*lll*tflvdkf*nnvynnnlvvdhyshlkvrllnpmidllqfvfvvvmlemlllmmkm
mrmmsmnwl*vvilmlmfvimmmrria*sldlvkflytfwnfdyyyynyyyhhxnxkcyl
hyilllknlmelekyfv*vivhfhlkk*qekllltrglvkkilihsmyfy*hhhylkmis
deklimvglfvfdqrilln*nllnlp*---

---slqvili*fnli*fnliyfilfylkgwyyfffffffffffsllyyflntffflkkkv
iikmsd*ifkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLB154 (SLB154Q) /CSM/SL/SLB1-C/SLB154Q.Seq.d/                        613   e-174
CHF216 (CHF216Q) /CSM/CH/CHF2-A/CHF216Q.Seq.d/                        543   e-153
SLE668 (SLE668Q) /CSM/SL/SLE6-C/SLE668Q.Seq.d/                         48   2e-04
CHP710 (CHP710Q) /CSM/CH/CHP7-A/CHP710Q.Seq.d/                         48   2e-04
AFJ764 (AFJ764Q) /CSM/AF/AFJ7-C/AFJ764Q.Seq.d/                         48   2e-04
VHA395 (VHA395Q) /CSM/VH/VHA3-D/VHA395Q.Seq.d/                         44   0.003
SSM727 (SSM727Q) /CSM/SS/SSM7-B/SSM727Q.Seq.d/                         44   0.003
SSL864 (SSL864Q) /CSM/SS/SSL8-C/SSL864Q.Seq.d/                         44   0.003
SHC329 (SHC329Q) /CSM/SH/SHC3-B/SHC329Q.Seq.d/                         44   0.003
CHO633 (CHO633Q) /CSM/CH/CHO6-B/CHO633Q.Seq.d/                         44   0.003
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU060697) Dictyostelium discoideum slug cDNA, clone SLB154.      559   0.0    3
(BJ364573) Dictyostelium discoideum cDNA clone:ddc32o04, 5' ...   301   5e-79  2
(ED132016) AUAC-aaw76h11.g1 Ascaris suum whole genome shotgu...    42   0.002  2
(FB571364) Sequence 231 from Patent EP1865317.                     38   0.086  2
(FB571308) Sequence 175 from Patent EP1865317.                     38   0.086  2
(DL200076) EPIGENETIC METHODS AND NUCLEIC ACIDS FOR THE DETE...    36   0.17   4
(AC019228) Homo sapiens chromosome UL clone RP11-570N12, WOR...    44   0.23   4
(AC189174) Colobus guereza clone CH272-19M15, WORKING DRAFT ...    38   0.35   4
(ER531132) 1093015752217 Global-Ocean-Sampling_GS-35-01-01-1...    34   0.39   2
(ER453422) 1092963859102 Global-Ocean-Sampling_GS-35-01-01-1...    34   0.39   2
dna update 2009. 1.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY344225_1(AY344225|pid:none) Candida glabrata Epa5p (EPA5) and ...    35   3.8
AY532156_1(AY532156|pid:none) Heliocidaris tuberculata SOX1 prot...    35   3.8
CP000496_474(CP000496|pid:none) Pichia stipitis CBS 6054 chromos...    34   5.0
AM494944_127(AM494944|pid:none) Leishmania braziliensis chromoso...    34   6.6
AL513466_25(AL513466|pid:none) Neurospora crassa DNA linkage gro...    34   6.6
CR855147_10(CR855147|pid:none) Oryza sativa genomic DNA, chromos...    33   8.6
AY160095_1(AY160095|pid:none) Dictyostelium discoideum nucleotid...    33   8.6
BA000026_263(BA000026|pid:none) Mycoplasma penetrans HF-2 DNA, c...    33   8.6
protein update 2009. 1.20
PSORT 

 psg: 0.75  gvh: 0.43  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: endoplasmic reticulum

>> prediction for SLB154 is cyt
5' end seq. ID SLB154F
5' end seq. 
>SLB154F.Seq
CTACCTGATTATTATTGTAAACATTTTTGGTGGATAAGTTCTAAAACAATGTTTACAATA
ATAATCTGGTTGTTGATCATTATAGTCATTTAAAAGTGAGGTTATTGAATCCAATGATTG
ACTTGCTCCAATTTGTTTTTGTTGTTGTAATGTTGGAAATGCTCTTATTAATGATGAAGA
TGATGAGGATGATGTCGATGAATTGGTTGTAGGTGGTGATATTGATGTTGATGTTTGTGA
TAATGATGATGAGGAGGATTGCTTAATCATTGGATTTGGTAAAATTTCTTTATACTTTTT
GGAATTTTGATTATTATTATTATAATTATTATTATCATCATNATAATANTAAGTGCTATT
TACATTATATCCTCTTATTGAAGAATTTGATGGAATTGGAGAAGTATTTTGTGTAGGTGA
TTGTACATTTTCATTTAAAAAAGTGACAGGAGAAGCTCTTGCTGACCCGGGGTTTGGTAA
AGAAAATCCTGATCCACTCGATGTATTTCTATTAACACCATCATTATTTAAAAATGATTT
CTGATGAGAAGTTGATAATGGTGGGGTTGTTTGTTTTTGATCAAAGGATCTTATTGAACT
AGAATTTATTAAATCTGCCATAA----------
Length of 5' end seq. 623
3' end seq. ID SLB154Z
3' end seq. 
>SLB154Z.Seq
----------TTTCTCTTCAAGTCATTTTAATTTAATTTAATTTAATTTAATTTAATTTA
ATTTATTTTATTTTATTTTATTTGAAAGGGTGGTATTACTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTAGTTTACTATATTATTTCCTAAATACTTTTTTTTTTTTAAAAAAAAAA
GTAATAATTAAAATGAGTGATTAAATATTTAAAAAAAAA
Length of 3' end seq. 209
Connected seq. ID SLB154P
Connected seq. 
>SLB154P.Seq
CTACCTGATTATTATTGTAAACATTTTTGGTGGATAAGTTCTAAAACAATGTTTACAATA
ATAATCTGGTTGTTGATCATTATAGTCATTTAAAAGTGAGGTTATTGAATCCAATGATTG
ACTTGCTCCAATTTGTTTTTGTTGTTGTAATGTTGGAAATGCTCTTATTAATGATGAAGA
TGATGAGGATGATGTCGATGAATTGGTTGTAGGTGGTGATATTGATGTTGATGTTTGTGA
TAATGATGATGAGGAGGATTGCTTAATCATTGGATTTGGTAAAATTTCTTTATACTTTTT
GGAATTTTGATTATTATTATTATAATTATTATTATCATCATNATAATANTAAGTGCTATT
TACATTATATCCTCTTATTGAAGAATTTGATGGAATTGGAGAAGTATTTTGTGTAGGTGA
TTGTACATTTTCATTTAAAAAAGTGACAGGAGAAGCTCTTGCTGACCCGGGGTTTGGTAA
AGAAAATCCTGATCCACTCGATGTATTTCTATTAACACCATCATTATTTAAAAATGATTT
CTGATGAGAAGTTGATAATGGTGGGGTTGTTTGTTTTTGATCAAAGGATCTTATTGAACT
AGAATTTATTAAATCTGCCATAA----------TTTCTCTTCAAGTCATTTTAATTTAAT
TTAATTTAATTTAATTTAATTTAATTTATTTTATTTTATTTTATTTGAAAGGGTGGTATT
ACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGTTTACTATATTATTTCCTAAATA
CTTTTTTTTTTTTAAAAAAAAAAGTAATAATTAAAATGAGTGATTAAATATTTAAAAAAA
AA
Length of connected seq. 832
Full length Seq ID -
Full length Seq. -
Length of full length seq. -