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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLB150
Library SL
(Link to library)
Clone ID SLB150
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16273-1
Original site URL
Representative seq. ID SLB150Z
(Link to Original site)
Representative DNA sequence 
>SLB150 (SLB150Q) /CSM/SL/SLB1-C/SLB150Q.Seq.d/
XXXXXXXXXXTTAGCCATTCAACACAATGTTAGCATTGGTGGTGATGATTTCAAAACTGG
TCAAACCAAAATCAAATCTGTCCTCACTGATTATCTCGTCAGTGCTGGTATTAAACCAGT
TTCAATCGTTTCATACAATCATTTAGGTAATAACGATGGTAAGAATCTCTCTGCTCCACA
ACAATTCCGTTCCAAAGAAATTACCAAATCAAATGTTGTCGATGATATGATTGCCTCAAA
TAACATCCTCTACAAACAAGGTGAACACCCAGATCACGTTATTGTCATCAAATACGTCCC
ATACGTAGGTGATTCAAAGAGAGCTATGGATGAATATACCTCACAAATCTTTATGGGTGG
TCACAATACAATCGTTCTCCACAACACTTGTGAAGATTCTTTATTAGCCGCTCCAATTAT
TTTAGATTTAGTTATTCTTGCTGAAGTTACTAGTCGTATCACAATGAAAAAACAAGATGA
TGATCAATTTGCTACTTTCCATCCAGTTTTATCATTATTATCATACCTCCTTAAAGCACC
AATTGTTCCAAAACATGCTACCGTTGTAAATGCACTCTTCAAACAAAGAGCCTGCATAGA
AAATATCTTCAAAGCATGCGTTGGTATCGCTCCAGATAATAACATGTTATTAGAACAAAG
ATTATAAATAATACAAACAATTTCAATAATAATAACATTTATTTAAAAAATAACTTCCAT
TTATAATAAAATAATCTTTTGTAAAAAAA
sequence update 1998. 3.27
Translated Amino Acid sequence 
---AIQHNVSIGGDDFKTGQTKIKSVLTDYLVSAGIKPVSIVSYNHLGNNDGKNLSAPQQ
FRSKEITKSNVVDDMIASNNILYKQGEHPDHVIVIKYVPYVGDSKRAMDEYTSQIFMGGH
NTIVLHNTCEDSLLAAPIILDLVILAEVTSRITMKKQDDDQFATFHPVLSLLSYLLKAPI
VPKHATVVNALFKQRACIENIFKACVGIAPDNNMLLEQRL*iiqtisiiitfi*kitsiy
nkiifckk
Translated Amino Acid sequence (All Frames) 
Frame A:
---*pfntmlalvvmisklvkpksnlssliissvlvlnqfqsfhtii*vitmvrisllhn
nsvpkklpnqmlsmi*lpqitsstnkvntqitllssntsht*viqrelwmniphkslwvv
tiqsfsttlvkily*plqlf*i*lfllkllvvsq*knkmminlllsiqfyhyyhtslkhq
lfqnmlpl*mhssnkepa*kisskhalvslqiitcy*nkdyk*ykqfq***hlfkk*lpf
iik*sfvkk


Frame B:
---shstqc*hww**fqnwsnqnqicph*lsrqcwy*tsfnrfiqsfr**rw*eslcstt
ipfqrnyqikccr*ydclk*hplqtr*tprsrychqirpirr*fkesyg*iyltnlygws
qynrspqhl*rffisrsnyfrfsysc*sy*syhnektr**sicyfpssfiiiiipp*stn
csktcyrckctlqtkslhrkylqsmrwyrsr**hvirtkiinntnnfnnnniylknnfhl
**nnll*k


Frame C:
---AIQHNVSIGGDDFKTGQTKIKSVLTDYLVSAGIKPVSIVSYNHLGNNDGKNLSAPQQ
FRSKEITKSNVVDDMIASNNILYKQGEHPDHVIVIKYVPYVGDSKRAMDEYTSQIFMGGH
NTIVLHNTCEDSLLAAPIILDLVILAEVTSRITMKKQDDDQFATFHPVLSLLSYLLKAPI
VPKHATVVNALFKQRACIENIFKACVGIAPDNNMLLEQRL*iiqtisiiitfi*kitsiy
nkiifckk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLB150 (SLB150Q) /CSM/SL/SLB1-C/SLB150Q.Seq.d/                       1451   0.0
VFF168 (VFF168Q) /CSM/VF/VFF1-C/VFF168Q.Seq.d/                       1445   0.0
VFE292 (VFE292Q) /CSM/VF/VFE2-D/VFE292Q.Seq.d/                       1445   0.0
CFK404 (CFK404Q) /CSM/CF/CFK4-A/CFK404Q.Seq.d/                       1445   0.0
AFM721 (AFM721Q) /CSM/AF/AFM7-A/AFM721Q.Seq.d/                       1445   0.0
AFD318 (AFD318Q) /CSM/AF/AFD3-A/AFD318Q.Seq.d/                       1445   0.0
VFC589 (VFC589Q) /CSM/VF/VFC5-D/VFC589Q.Seq.d/                       1441   0.0
VFD828 (VFD828Q) /CSM/VF/VFD8-B/VFD828Q.Seq.d/                       1439   0.0
VFN230 (VFN230Q) /CSM/VF/VFN2-B/VFN230Q.Seq.d/                       1437   0.0
VFE468 (VFE468Q) /CSM/VF/VFE4-C/VFE468Q.Seq.d/                       1437   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU033543) Dictyostelium discoideum slug cDNA, clone SLB150.     1294   0.0    1
(BJ443797) Dictyostelium discoideum cDNA clone:ddv54l04, 3' ...  1294   0.0    1
(BJ435517) Dictyostelium discoideum cDNA clone:ddv27k08, 3' ...  1294   0.0    1
(BJ431090) Dictyostelium discoideum cDNA clone:ddv9g24, 3' e...  1294   0.0    1
(BJ428979) Dictyostelium discoideum cDNA clone:ddv1n22, 3' e...  1294   0.0    1
(BJ428339) Dictyostelium discoideum cDNA clone:ddv11g17, 3' ...  1294   0.0    1
(BJ376066) Dictyostelium discoideum cDNA clone:ddc21h02, 3' ...  1294   0.0    1
(BJ371876) Dictyostelium discoideum cDNA clone:ddc10h05, 3' ...  1294   0.0    1
(BJ347108) Dictyostelium discoideum cDNA clone:dda26j05, 3' ...  1294   0.0    1
(BJ341527) Dictyostelium discoideum cDNA clone:dda7d05, 3' e...  1294   0.0    1
dna update 2009. 1.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q40271) RecName: Full=Inositol-3-phosphate synthase;          E...   340   3e-92
EU976978_1(EU976978|pid:none) Zea mays clone 995301 unknown mRNA.     339   5e-92
(Q9FPK7) RecName: Full=Inositol-3-phosphate synthase;          E...   339   5e-92
EU961709_1(EU961709|pid:none) Zea mays clone 237754 inositol-3-p...   339   5e-92
EU371115_1(EU371115|pid:none) Brassica juncea myo-iositol-1-phos...   337   2e-91
(Q9FYV1) RecName: Full=Inositol-3-phosphate synthase;          E...   337   2e-91
EF449773_1(EF449773|pid:none) Xerophyta viscosa myo-inositol-1-p...   337   2e-91
(Q9LW96) RecName: Full=Inositol-3-phosphate synthase;          E...   337   3e-91
(Q9SSV4) RecName: Full=Inositol-3-phosphate synthase;          E...   336   4e-91
AY323824_1(AY323824|pid:none) Xerophyta viscosa myo-inositol-1-p...   336   5e-91
protein update 2009. 5.31
PSORT 

 psg: 0.75  gvh: 0.38  alm: 0.26  top: 0.73  tms: 0.07  mit: 0.14  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.23  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 52.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for SLB150 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLB150Z
3' end seq. 
>SLB150Z.Seq
----------TTAGCCATTCAACACAATGTTAGCATTGGTGGTGATGATTTCAAAACTGG
TCAAACCAAAATCAAATCTGTCCTCACTGATTATCTCGTCAGTGCTGGTATTAAACCAGT
TTCAATCGTTTCATACAATCATTTAGGTAATAACGATGGTAAGAATCTCTCTGCTCCACA
ACAATTCCGTTCCAAAGAAATTACCAAATCAAATGTTGTCGATGATATGATTGCCTCAAA
TAACATCCTCTACAAACAAGGTGAACACCCAGATCACGTTATTGTCATCAAATACGTCCC
ATACGTAGGTGATTCAAAGAGAGCTATGGATGAATATACCTCACAAATCTTTATGGGTGG
TCACAATACAATCGTTCTCCACAACACTTGTGAAGATTCTTTATTAGCCGCTCCAATTAT
TTTAGATTTAGTTATTCTTGCTGAAGTTACTAGTCGTATCACAATGAAAAAACAAGATGA
TGATCAATTTGCTACTTTCCATCCAGTTTTATCATTATTATCATACCTCCTTAAAGCACC
AATTGTTCCAAAACATGCTACCGTTGTAAATGCACTCTTCAAACAAAGAGCCTGCATAGA
AAATATCTTCAAAGCATGCGTTGGTATCGCTCCAGATAATAACATGTTATTAGAACAAAG
ATTATAAATAATACAAACAATTTCAATAATAATAACATTTATTTAAAAAATAACTTCCAT
TTATAATAAAATAATCTTTTGTAAAAAAA
Length of 3' end seq. 739
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -