SLB147
Library SL
(Link to library)
Clone ID SLB147
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13024-1
Original site URL
Representative seq. ID SLB147Z
(Link to Original site)
Representative DNA sequence
>SLB147 (SLB147Q) /CSM/SL/SLB1-B/SLB147Q.Seq.d/
XXXXXXXXXXTTCACTCATGGTACCATTCAAGGTGTTGGTGCTCTTAAATGTGGTACTTG
TAACTTTGCCAATAAGATCGCTGCTAACCTCAACATTGTTGGTAACGTTAAAATGGCCGC
AACTGCAACTGTCTATGCAAACATTGATGCTTTAATGTCAATCACCACCTCAACCCAAAC
CTCAATCTCTCAATCATCAACCAAGACTGTCAACGGTAAGACCACCACTCAATCATCATC
AAGCTCATCATCATCCATCTCTAAACAATTCGTTCCAATGATCGTTTGTTCAGGTACTGC
TGATGTTGCTGGTAACCTCAATGTCGTTGCCTCAGAAGCCAATCAAGCTAAAATTGCCTC
TGGTACTGTATTCAAATTCATCTCAGCCCCAGTTGTTAAAGGTAATGTCTCCTCAGTTAG
CTGTCTCACCTCAAGCACTGCTGCTGCTGCTCAACAAGCTGCCGGTGCTGCTGCTGCTGC
TGCCCAAAAAGCTGCTATGGCTGCTGCCTCTAAAGTTTGGTCAATTGTAAATTCACCATG
TAACTGTGAATGTGGATTGAAGAGATTATAAATTGATTCAACTCCTCCTCTCCAATGACA
ATAAATTAAAATAATACAACTCATTCTTATTTTTCTTTATTCTAACCAATGTATTTGTCA
ATTAACTTATTAACTTTTTAAACACACCCTTTTCAATTTTAAAACAATAAAAATTTACAT
ATTAAAATTTAAA
sequence update 1998. 3.27
Translated Amino Acid sequence
---THGTIQGVGALKCGTCNFANKIAANLNIVGNVKMAATATVYANIDALMSITTSTQTS
ISQSSTKTVNGKTTTQSSSSSSSSISKQFVPMIVCSGTADVAGNLNVVASEANQAKIASG
TVFKFISAPVVKGNVSSVSCLTSSTAAAAQQAAGAAAAAAQKAAMAAASKVWSIVNSPCN
CECGLKRL*idstpplq*q*ikiiqliliflysnqcicqlty*lfkhtlfnfktikiyil
kfk


Translated Amino Acid sequence (All Frames)
Frame A:
---slmvpfkvlvllnvvlvtlpirslltstllvtlkwpqlqlsmqtlml*cqsppqpkp
qslnhqprlstvrpplnhhqahhhpslnnsfq*sfvqvllmllvtsmslpqkpiklklpl
vlysnssqpqllkvmspqlavspqalllllnklpvlllllpkkllwllplkfgql*ihhv
tvnvd*rdykliqlllsndnklk*ynsflfffiltnvfvn*linflntpfsilkq*kfty
*nl


Frame B:
---hswyhsrcwcs*mwyl*lcq*drc*pqhcw*r*ngrncnclckh*cfnvnhhlnpnl
nlsiinqdcqr*dhhsiiikliiihl*tirsndrlfryc*ccw*pqcrclrsqss*nclw
yciqihlspsc*r*clls*lshlkhccccstscrccccccpkscygccl*slvnckftm*
l*mwieeiin*fnssspmtin*nntthsyfslf*pmylsinlltf*thpfqf*nnknlhi
ki*


Frame C:
---THGTIQGVGALKCGTCNFANKIAANLNIVGNVKMAATATVYANIDALMSITTSTQTS
ISQSSTKTVNGKTTTQSSSSSSSSISKQFVPMIVCSGTADVAGNLNVVASEANQAKIASG
TVFKFISAPVVKGNVSSVSCLTSSTAAAAQQAAGAAAAAAQKAAMAAASKVWSIVNSPCN
CECGLKRL*idstpplq*q*ikiiqliliflysnqcicqlty*lfkhtlfnfktikiyil
kfk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLE342 (SLE342Q) /CSM/SL/SLE3-B/SLE342Q.Seq.d/ 846 0.0
SLB147 (SLB147Q) /CSM/SL/SLB1-B/SLB147Q.Seq.d/ 846 0.0
SLA101 (SLA101Q) /CSM/SL/SLA1-A/SLA101Q.Seq.d/ 846 0.0
SHL563 (SHL563Q) /CSM/SH/SHL5-C/SHL563Q.Seq.d/ 846 0.0
SHL325 (SHL325Q) /CSM/SH/SHL3-B/SHL325Q.Seq.d/ 846 0.0
SHL307 (SHL307Q) /CSM/SH/SHL3-A/SHL307Q.Seq.d/ 846 0.0
SHL203 (SHL203Q) /CSM/SH/SHL2-A/SHL203Q.Seq.d/ 846 0.0
SHK865 (SHK865Q) /CSM/SH/SHK8-C/SHK865Q.Seq.d/ 846 0.0
SHK762 (SHK762Q) /CSM/SH/SHK7-C/SHK762Q.Seq.d/ 846 0.0
SHK650 (SHK650Q) /CSM/SH/SHK6-C/SHK650Q.Seq.d/ 846 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ407121) Dictyostelium discoideum cDNA clone:dds37e13, 3' ... 432 0.0 3
(BJ403162) Dictyostelium discoideum cDNA clone:dds24c08, 3' ... 432 0.0 3
(BJ408565) Dictyostelium discoideum cDNA clone:dds46b07, 3' ... 432 0.0 3
(AU033540) Dictyostelium discoideum slug cDNA, clone SLB147. 432 0.0 3
(BJ408085) Dictyostelium discoideum cDNA clone:dds44l15, 3' ... 432 0.0 3
(BJ408240) Dictyostelium discoideum cDNA clone:dds45m03, 3' ... 432 0.0 3
(BJ405165) Dictyostelium discoideum cDNA clone:dds30e22, 3' ... 432 0.0 3
(BJ405232) Dictyostelium discoideum cDNA clone:dds31c02, 3' ... 432 0.0 3
(BJ404311) Dictyostelium discoideum cDNA clone:dds28k02, 3' ... 432 0.0 3
(BJ407729) Dictyostelium discoideum cDNA clone:dds43o10, 3' ... 432 0.0 3
dna update 2009. 1.30
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

U83087_1(U83087|pid:none) Dictyostelium discoideum rsc12 mRNA, p... 253 4e-66
AY530539_1(AY530539|pid:none) Mimulus ringens deficiens (DEF) mR... 34 5.1
AY524011_1(AY524011|pid:none) Paulownia tomentosa deficiens (DEF... 33 6.7

protein update 2009. 1.20
PSORT

psg: 0.85 gvh: 0.54 alm: 0.41 top: 0.57 tms: 0.00 mit: 0.23 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: mitochondrial
8.0 %: peroxisomal
4.0 %: endoplasmic reticulum

>> prediction for SLB147 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLB147Z
3' end seq.
>SLB147Z.Seq
----------TTCACTCATGGTACCATTCAAGGTGTTGGTGCTCTTAAATGTGGTACTTG
TAACTTTGCCAATAAGATCGCTGCTAACCTCAACATTGTTGGTAACGTTAAAATGGCCGC
AACTGCAACTGTCTATGCAAACATTGATGCTTTAATGTCAATCACCACCTCAACCCAAAC
CTCAATCTCTCAATCATCAACCAAGACTGTCAACGGTAAGACCACCACTCAATCATCATC
AAGCTCATCATCATCCATCTCTAAACAATTCGTTCCAATGATCGTTTGTTCAGGTACTGC
TGATGTTGCTGGTAACCTCAATGTCGTTGCCTCAGAAGCCAATCAAGCTAAAATTGCCTC
TGGTACTGTATTCAAATTCATCTCAGCCCCAGTTGTTAAAGGTAATGTCTCCTCAGTTAG
CTGTCTCACCTCAAGCACTGCTGCTGCTGCTCAACAAGCTGCCGGTGCTGCTGCTGCTGC
TGCCCAAAAAGCTGCTATGGCTGCTGCCTCTAAAGTTTGGTCAATTGTAAATTCACCATG
TAACTGTGAATGTGGATTGAAGAGATTATAAATTGATTCAACTCCTCCTCTCCAATGACA
ATAAATTAAAATAATACAACTCATTCTTATTTTTCTTTATTCTAACCAATGTATTTGTCA
ATTAACTTATTAACTTTTTAAACACACCCTTTTCAATTTTAAAACAATAAAAATTTACAT
ATTAAAATTTAAA
Length of 3' end seq. 723
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -