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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLB141
Library SL
(Link to library)
Clone ID SLB141
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SLB141Z
(Link to Original site)
Representative DNA sequence 
>SLB141 (SLB141Q) /CSM/SL/SLB1-B/SLB141Q.Seq.d/
XXXXXXXXXXTCGATGCCATCGTCGAACCAAAACGTCCACACGATAAACCATTACGTATT
CCATTACAAGATGTCTACAAGATCGGTGGTATCGGTACTGTTCCAGTAGGTCGTGTCGAA
ACTGGTATCATTAAACCAGGTATGGTCGTCACCTTTGCCCCAGCTGGTCTCTCAACTGAA
GTCAAATCAGTCGAAATGCATCACGAACAACTCCCAGAAGCCCGTCCAGGTGACAATGTA
GGTTTCAACGTTAAAAACGTTTCAGTCAAAGAAATTAAAAGAGGTATGGTCGCTGGTGAC
TCCAAAAACGATCCACCACAAGAAACTGAAAAATTCGTTGCTCAAGTTATCGTCCTCAAC
CATCCAGGTCAAATCCATGCTGGTTACTCACCAGTCTTAGATTGTCACACTGCTCACATT
GCCTGTAAATTCACTGAAATCGTCGATAAAGTTGATCGTCGTACTGGTGCCGTCGTTGCC
AAAGAAGGTACTGCCGCCGTCGTCTTAAAGAATGGTGATGCCGCTATGGTCGAATTAACC
CCATCTCGTCCAATGTGTGTTGAATCCTTCACTGAATACCCACCATTAGGTCGTTTCGCC
GTCAGAGATATGAGACAAACCGTCGCCGTCGGTGTCATCAAATCAACCGTCAAGAAAGCC
CCAGGTAAAGCCGGTGATAAGAAAGGTGCTGCTGCCCCATCAAAAAAGAAATAAATAAAT
AATATTTCTTAATAAATA
sequence update 1998. 3.27
Translated Amino Acid sequence 
---DAIVEPKRPHDKPLRIPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPAGLSTEV
KSVEMHHEQLPEARPGDNVGFNVKNVSVKEIKRGMVAGDSKNDPPQETEKFVAQVIVLNH
PGQIHAGYSPVLDCHTAHIACKFTEIVDKVDRRTGAVVAKEGTAAVVLKNGDAAMVELTP
SRPMCVESFTEYPPLGRFAVRDMRQTVAVGVIKSTVKKAPGKAGDKKGAAAPSKKK*inn
is**i
Translated Amino Acid sequence (All Frames) 
Frame A:
---rchrrtktstr*titysitrclqdrwyrycssrscrnwyh*trygrhlcpswsln*s
qisrnasrttprspsr*qcrfqr*krfsqrn*krygrw*lqkrsttrn*kircssyrpqp
srsnpcwlltslrlshcshcl*ih*nrr*s*ssywcrrcqrrycrrrlkew*crygrinp
issnvc*ilh*iptirsfrrqryetnrrrrchqinrqespr*sr**ercccpikkeink*
yflin


Frame B:
---DAIVEPKRPHDKPLRIPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPAGLSTEV
KSVEMHHEQLPEARPGDNVGFNVKNVSVKEIKRGMVAGDSKNDPPQETEKFVAQVIVLNH
PGQIHAGYSPVLDCHTAHIACKFTEIVDKVDRRTGAVVAKEGTAAVVLKNGDAAMVELTP
SRPMCVESFTEYPPLGRFAVRDMRQTVAVGVIKSTVKKAPGKAGDKKGAAAPSKKK*inn
is**i


Frame C:
---mpssnqnvhtinhyvfhykmstrsvvsvlfq*vvsklvslnqvwssplpqlvsqlks
nqskcitnnsqkpvqvtm*vstlktfqskklkevwslvtpktihhkklknsllklsssti
qvksmlvthqs*ivtlltlpvnslkssiklivvlvpslpkkvlppss*rmvmplwsn*ph
lvqcvlnpslnthh*vvspsei*dkpspsvssnqpsrkpqvkpvirkvllphqkrnk*ii
flnk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFN174 (VFN174Q) /CSM/VF/VFN1-D/VFN174Q.Seq.d/                       1443   0.0
VFI880 (VFI880Q) /CSM/VF/VFI8-D/VFI880Q.Seq.d/                       1443   0.0
VFI822 (VFI822Q) /CSM/VF/VFI8-A/VFI822Q.Seq.d/                       1443   0.0
VFI781 (VFI781Q) /CSM/VF/VFI7-D/VFI781Q.Seq.d/                       1443   0.0
VFI708 (VFI708Q) /CSM/VF/VFI7-A/VFI708Q.Seq.d/                       1443   0.0
VFE192 (VFE192Q) /CSM/VF/VFE1-D/VFE192Q.Seq.d/                       1443   0.0
VFD395 (VFD395Q) /CSM/VF/VFD3-D/VFD395Q.Seq.d/                       1443   0.0
VFC664 (VFC664Q) /CSM/VF/VFC6-C/VFC664Q.Seq.d/                       1443   0.0
VFB855 (VFB855Q) /CSM/VF/VFB8-C/VFB855Q.Seq.d/                       1443   0.0
SLB142 (SLB142Q) /CSM/SL/SLB1-B/SLB142Q.Seq.d/                       1443   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU033535) Dictyostelium discoideum slug cDNA, clone SLB142.     1443   0.0    1
(AU033534) Dictyostelium discoideum slug cDNA, clone SLB141.     1443   0.0    1
(BJ435638) Dictyostelium discoideum cDNA clone:ddv27c19, 3' ...  1443   0.0    1
(BJ432530) Dictyostelium discoideum cDNA clone:ddv18p20, 3' ...  1443   0.0    1
(BJ432458) Dictyostelium discoideum cDNA clone:ddv18b21, 3' ...  1443   0.0    1
(BJ432272) Dictyostelium discoideum cDNA clone:ddv18p01, 3' ...  1443   0.0    1
(BJ432256) Dictyostelium discoideum cDNA clone:ddv18l06, 3' ...  1443   0.0    1
(BJ431089) Dictyostelium discoideum cDNA clone:ddv9g23, 3' e...  1443   0.0    1
(BJ430607) Dictyostelium discoideum cDNA clone:ddv7n23, 3' e...  1443   0.0    1
(BJ430284) Dictyostelium discoideum cDNA clone:ddv6o16, 3' e...  1443   0.0    1
dna update 2009. 1.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X55973_1(X55973|pid:none) D. discoideum EF1-I gene for elongatio...   429   e-119
X55972_1(X55972|pid:none) D. discoideum EF1-II gene for elongati...   429   e-119
(P18624) RecName: Full=Elongation factor 1-alpha;          Short...   429   e-119
AY542532_1(AY542532|pid:none) Cladonema radiatum translation elo...   342   5e-93
AY643816_1(AY643816|pid:none) Lycogala epidendrum elongation fac...   339   4e-92
AY643820_1(AY643820|pid:none) Arcyria denudata elongation factor...   338   1e-91
(P41745) RecName: Full=Elongation factor 1-alpha;          Short...   337   2e-91
AJ581004_1(AJ581004|pid:none) Axinella verrucosa mRNA for elonga...   336   5e-91
Y09023_1(Y09023|pid:none) G.cydonium mRNA for elongation factor ...   336   5e-91
AY582829_1(AY582829|pid:none) Acanthamoeba culbertsoni ef1a gene...   335   6e-91
protein update 2009. 5.31
PSORT 

 psg: 0.75  gvh: 0.50  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 28.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for SLB141 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLB141Z
3' end seq. 
>SLB141Z.Seq
----------TCGATGCCATCGTCGAACCAAAACGTCCACACGATAAACCATTACGTATT
CCATTACAAGATGTCTACAAGATCGGTGGTATCGGTACTGTTCCAGTAGGTCGTGTCGAA
ACTGGTATCATTAAACCAGGTATGGTCGTCACCTTTGCCCCAGCTGGTCTCTCAACTGAA
GTCAAATCAGTCGAAATGCATCACGAACAACTCCCAGAAGCCCGTCCAGGTGACAATGTA
GGTTTCAACGTTAAAAACGTTTCAGTCAAAGAAATTAAAAGAGGTATGGTCGCTGGTGAC
TCCAAAAACGATCCACCACAAGAAACTGAAAAATTCGTTGCTCAAGTTATCGTCCTCAAC
CATCCAGGTCAAATCCATGCTGGTTACTCACCAGTCTTAGATTGTCACACTGCTCACATT
GCCTGTAAATTCACTGAAATCGTCGATAAAGTTGATCGTCGTACTGGTGCCGTCGTTGCC
AAAGAAGGTACTGCCGCCGTCGTCTTAAAGAATGGTGATGCCGCTATGGTCGAATTAACC
CCATCTCGTCCAATGTGTGTTGAATCCTTCACTGAATACCCACCATTAGGTCGTTTCGCC
GTCAGAGATATGAGACAAACCGTCGCCGTCGGTGTCATCAAATCAACCGTCAAGAAAGCC
CCAGGTAAAGCCGGTGATAAGAAAGGTGCTGCTGCCCCATCAAAAAAGAAATAAATAAAT
AATATTTCTTAATAAATA
Length of 3' end seq. 728
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -