SLB133
Library SL
(Link to library)
Clone ID SLB133
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13482-1
Original site URL
Representative seq. ID SLB133Z
(Link to Original site)
Representative DNA sequence
>SLB133 (SLB133Q) /CSM/SL/SLB1-B/SLB133Q.Seq.d/
XXXXXXXXXXTTCAATCATTTTATTACATGCATGTGCTCACAATCCAACCGGTGTCGATC
CAACCGCTGAGCAATGGAAAAAGATCTCTGAAATCTGTAAAGAGCGTGGTCATTTTGTTC
TCTTTGATTTCGCTTATCAAGGTTTCGCATCTGGTAGCCCAGAAAAGGATGCTGCCGCTG
TCCGTATGTTTGTCGAAGATGGTCACAACATTGCTCTCTGTCAATCATTTGCTAAAAACT
TTGGTCTCTATGGTGAACGTATTGGTGCTTTCTCCATTCTCACTGAAACTTCAGATCAAG
CTCTCAACGTTGAATCTCAATTAAAGATCTTAATTCGTCCAATGTACTCTAATCCACCAG
TTTATGGAGCTCGTCTCGTTCAAGCTATCCTCAAAGATAAAGAATTAACCAATGAATGGA
GATCCGAAGTTAAAGGTATGGCCGATCGTATCATTAACATGAGAGAACAATTAGTCAAAT
ACCTTAAAAAACATGGTTCAACTCGTGATTGGTCTCATATTACCACTCAAATTGGTATGT
TTTGTTTCACTGGTTTAACTCCAGAACAAGTTGATCGTTTGGCAAATGAATATCACATCT
ATTTAACTCGTAATGGTCGTATCTCAATTGCTGGTATTAATTCAACAAATGTTGAATATC
TCGCTAAAGCAATGGCTGCCGTTACAAAAGATAATTA
sequence update 1998. 3.27
Translated Amino Acid sequence
---SIILLHACAHNPTGVDPTAEQWKKISEICKERGHFVLFDFAYQGFASGSPEKDAAAV
RMFVEDGHNIALCQSFAKNFGLYGERIGAFSILTETSDQALNVESQLKILIRPMYSNPPV
YGARLVQAILKDKELTNEWRSEVKGMADRIINMREQLVKYLKKHGSTRDWSHITTQIGMF
CFTGLTPEQVDRLANEYHIYLTRNGRISIAGINSTNVEYLAKAMAAVTKDN


Translated Amino Acid sequence (All Frames)
Frame A:
---SIILLHACAHNPTGVDPTAEQWKKISEICKERGHFVLFDFAYQGFASGSPEKDAAAV
RMFVEDGHNIALCQSFAKNFGLYGERIGAFSILTETSDQALNVESQLKILIRPMYSNPPV
YGARLVQAILKDKELTNEWRSEVKGMADRIINMREQLVKYLKKHGSTRDWSHITTQIGMF
CFTGLTPEQVDRLANEYHIYLTRNGRISIAGINSTNVEYLAKAMAAVTKDN


Frame B:
---qsfyymhvltiqpvsiqplsngkrslksvksvvilfslislikvshlvaqkrmlpls
vclskmvttllsvnhllktlvsmvnvlvlspfslklqiklstlnln*rs*fvqctlihqf
melvsfklsskikn*pmngdpklkvwpivslt*enn*sntlknmvqlviglilplklvcf
vslv*lqnklivwqmnitsi*lvmvvsqllvliqqmlnislkqwlplqkii


Frame C:
---nhfitcmcsqsnrcrsnr*amekdl*nl*rawsfcsl*frlsrfriw*prkgccrcp
yvcrrwsqhcslsiic*klwslw*tywcflhsh*nfrsssqr*isikdlnssnvl*stsl
wsssrssypqr*rinq*meirs*rygrsyh*hertisqip*ktwfns*lvsyyhsnwyvl
fhwfnsrts*sfgk*ishlfns*wsylncwy*fnkc*isr*sngcrykr*l


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLB133 (SLB133Q) /CSM/SL/SLB1-B/SLB133Q.Seq.d/ 1362 0.0
SLE757 (SLE757Q) /CSM/SL/SLE7-C/SLE757Q.Seq.d/ 1332 0.0
AFM850 (AFM850Q) /CSM/AF/AFM8-C/AFM850Q.Seq.d/ 1312 0.0
AFM514 (AFM514Q) /CSM/AF/AFM5-A/AFM514Q.Seq.d/ 1294 0.0
SFE417 (SFE417Q) /CSM/SF/SFE4-A/SFE417Q.Seq.d/ 1289 0.0
VFL403 (VFL403Q) /CSM/VF/VFL4-A/VFL403Q.Seq.d/ 1283 0.0
SFH219 (SFH219Q) /CSM/SF/SFH2-A/SFH219Q.Seq.d/ 1281 0.0
VFJ338 (VFJ338Q) /CSM/VF/VFJ3-B/VFJ338Q.Seq.d/ 1277 0.0
AFM425 (AFM425Q) /CSM/AF/AFM4-B/AFM425Q.Seq.d/ 1275 0.0
SFJ128 (SFJ128Q) /CSM/SF/SFJ1-B/SFJ128Q.Seq.d/ 1267 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU033526) Dictyostelium discoideum slug cDNA, clone SLB133. 1362 0.0 1
(AU039562) Dictyostelium discoideum slug cDNA, clone SLE757. 1332 0.0 1
(BJ432675) Dictyostelium discoideum cDNA clone:ddv19l09, 3' ... 1273 0.0 1
(BJ347243) Dictyostelium discoideum cDNA clone:dda26d14, 3' ... 1273 0.0 3
(BJ347111) Dictyostelium discoideum cDNA clone:dda26k03, 3' ... 1273 0.0 2
(BJ433829) Dictyostelium discoideum cDNA clone:ddv23f02, 3' ... 1265 0.0 2
(BJ347702) Dictyostelium discoideum cDNA clone:dda27k24, 3' ... 1245 0.0 1
(BJ346841) Dictyostelium discoideum cDNA clone:dda25b08, 3' ... 1243 0.0 3
(BJ400838) Dictyostelium discoideum cDNA clone:dds15e06, 3' ... 1231 0.0 3
(BJ401762) Dictyostelium discoideum cDNA clone:dds19g07, 3' ... 1223 0.0 3
dna update 2009. 1.30
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q55F21) RecName: Full=Aspartate aminotransferase, mitochondrial... 462 e-129
BC054684_1(BC054684|pid:none) Danio rerio glutamic-oxaloacetic t... 310 3e-83
(P00505) RecName: Full=Aspartate aminotransferase, mitochondrial... 308 1e-82
(Q4R559) RecName: Full=Aspartate aminotransferase, mitochondrial... 307 2e-82
CR860094_1(CR860094|pid:none) Pongo abelii mRNA; cDNA DKFZp469B0... 307 2e-82
AK098313_1(AK098313|pid:none) Homo sapiens cDNA FLJ40994 fis, cl... 307 2e-82
AM270079_80(AM270079|pid:none) Aspergillus niger contig An04c018... 304 1e-81
AK290847_1(AK290847|pid:none) Homo sapiens cDNA FLJ78439 complet... 303 2e-81
BT075809_1(BT075809|pid:none) Caligus rogercresseyi clone crog-e... 303 2e-81
BT076126_1(BT076126|pid:none) Caligus rogercresseyi clone crog-e... 302 5e-81
protein update 2009. 5.31
PSORT

psg: 0.90 gvh: 0.56 alm: 0.49 top: 0.47 tms: 0.00 mit: 0.25 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
32.0 %: cytoplasmic
16.0 %: mitochondrial
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for SLB133 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLB133Z
3' end seq.
>SLB133Z.Seq
----------TTCAATCATTTTATTACATGCATGTGCTCACAATCCAACCGGTGTCGATC
CAACCGCTGAGCAATGGAAAAAGATCTCTGAAATCTGTAAAGAGCGTGGTCATTTTGTTC
TCTTTGATTTCGCTTATCAAGGTTTCGCATCTGGTAGCCCAGAAAAGGATGCTGCCGCTG
TCCGTATGTTTGTCGAAGATGGTCACAACATTGCTCTCTGTCAATCATTTGCTAAAAACT
TTGGTCTCTATGGTGAACGTATTGGTGCTTTCTCCATTCTCACTGAAACTTCAGATCAAG
CTCTCAACGTTGAATCTCAATTAAAGATCTTAATTCGTCCAATGTACTCTAATCCACCAG
TTTATGGAGCTCGTCTCGTTCAAGCTATCCTCAAAGATAAAGAATTAACCAATGAATGGA
GATCCGAAGTTAAAGGTATGGCCGATCGTATCATTAACATGAGAGAACAATTAGTCAAAT
ACCTTAAAAAACATGGTTCAACTCGTGATTGGTCTCATATTACCACTCAAATTGGTATGT
TTTGTTTCACTGGTTTAACTCCAGAACAAGTTGATCGTTTGGCAAATGAATATCACATCT
ATTTAACTCGTAATGGTCGTATCTCAATTGCTGGTATTAATTCAACAAATGTTGAATATC
TCGCTAAAGCAATGGCTGCCGTTACAAAAGATAATTA
Length of 3' end seq. 687
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -