SLB126
Library SL
(Link to library)
Clone ID SLB126
Atlas ID
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16381-1
Original site URL
Representative seq. ID SLB126E
(Link to Original site)
Representative DNA sequence
>SLB126 (SLB126Q) /CSM/SL/SLB1-B/SLB126Q.Seq.d/
GAAAGCAAGATGTGATGATGTCGAATGTCCAGATTTCCATAGATGTGTTGAAAGACGTGG
TGGTATCTTAAGTTGTGAATTTGATCCACCAAGACAACCAAGATCCCTTGATTGGGCTGA
AAATGAAAATGATGATCGTGACTATGATGATCGTGACTATGATGATGATGAATATGATGG
TGATTATGATGGCCGTGACGGTGACTATGATGGTGATTATGATGGTGATTATGATGATGA
CAATTATTATGGTGATGATGACTATGATAATGATTGGGACAATGATAATGATTGGGGTAA
TGATTGGGATAATGATTGGGACAATGAAGATGGTGATAATTGGAATGATGATGACTTCCA
AGATGCAAATGATGAATGGGACTATTAAGCCATTAATTTTTTAAAAAAAATAATAATAAT
ATTAATACAAATAATTTTTTAAAAAAAAAAAAAG
sequence update 1998. 3.27
Translated Amino Acid sequence
KARCDDVECPDFHRCVERRGGILSCEFDPPRQPRSLDWAENENDDRDYDDRDYDDDEYDG
DYDGRDGDYDGDYDGDYDDDNYYGDDDYDNDWDNDNDWGNDWDNDWDNEDGDNWNDDDFQ
DANDEWDY*ainflkkiiiiliqiif*kkkk


Translated Amino Acid sequence (All Frames)
Frame A:
eskm**crmsrfp*mc*ktwwylkl*i*stkttkip*lg*k*k**s*l**s*l****i*w
*l*wp*r*l*w*l*w*l***qllw***l***lgq***lg**lg**lgq*rw**le***lp
rck**mgllsh*ffkknnnnintnnflkkkk


Frame B:
KARCDDVECPDFHRCVERRGGILSCEFDPPRQPRSLDWAENENDDRDYDDRDYDDDEYDG
DYDGRDGDYDGDYDGDYDDDNYYGDDDYDNDWDNDNDWGNDWDNDWDNEDGDNWNDDDFQ
DANDEWDY*ainflkkiiiiliqiif*kkkk


Frame C:
kqdvmmsnvqisidvlkdvvvs*vvnlihqdnqdpliglkmkmmivtmmivtmmmmnmmv
immavtvtmmvimmvimmmtiimvmmtmimigtmimigvmigimigtmkmviigmmmtsk
mqmmngtikplif*kk***y*yk*ffkkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLJ720 (SLJ720Q) /CSM/SL/SLJ7-A/SLJ720Q.Seq.d/ 254 1e-66
SLI767 (SLI767Q) /CSM/SL/SLI7-C/SLI767Q.Seq.d/ 254 1e-66
SLI753 (SLI753Q) /CSM/SL/SLI7-C/SLI753Q.Seq.d/ 254 1e-66
SLI573 (SLI573Q) /CSM/SL/SLI5-D/SLI573Q.Seq.d/ 254 1e-66
SLI384 (SLI384Q) /CSM/SL/SLI3-D/SLI384Q.Seq.d/ 254 1e-66
SLH820 (SLH820Q) /CSM/SL/SLH8-A/SLH820Q.Seq.d/ 254 1e-66
SLH722 (SLH722Q) /CSM/SL/SLH7-A/SLH722Q.Seq.d/ 254 1e-66
SLH522 (SLH522Q) /CSM/SL/SLH5-A/SLH522Q.Seq.d/ 254 1e-66
SLH221 (SLH221Q) /CSM/SL/SLH2-A/SLH221Q.Seq.d/ 254 1e-66
SLG753 (SLG753Q) /CSM/SL/SLG7-C/SLG753Q.Seq.d/ 254 1e-66

own update 2001. 8.26
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU039550) Dictyostelium discoideum slug cDNA, clone SLE734. 232 5e-94 2
(AU033521) Dictyostelium discoideum slug cDNA, clone SLB126. 232 5e-94 2
(AU033891) Dictyostelium discoideum slug cDNA, clone SLB575. 232 5e-94 2
(AU053493) Dictyostelium discoideum slug cDNA, clone SLI767. 232 6e-94 2
(AU052922) Dictyostelium discoideum slug cDNA, clone SLF326. 232 6e-94 2
(AU052923) Dictyostelium discoideum slug cDNA, clone SLF327. 232 6e-94 2
(AU034267) Dictyostelium discoideum slug cDNA, clone SLC347. 232 6e-94 2
(AU033723) Dictyostelium discoideum slug cDNA, clone SLB360. 232 6e-94 2
(AU053488) Dictyostelium discoideum slug cDNA, clone SLI753. 232 6e-94 2
(AU052329) Dictyostelium discoideum slug cDNA, clone SLD153. 232 6e-94 2
dna update 2009. 1.30
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor... 94 1e-18
S72639_1(S72639|pid:none) PspB=prespore-specific gene {5' region... 32 6.9
D90272_1(D90272|pid:none) Tachypleus tridentatus mRNA for limulu... 32 9.1
(P28175) RecName: Full=Limulus clotting factor C; Short... 32 9.1
AX112197_1(AX112197|pid:none) Sequence 1 from Patent WO0127289. ... 32 9.1
AF467804_1(AF467804|pid:none) Tachypleus tridentatus factor C pr... 32 9.1

protein update 2009. 3. 3
PSORT

psg: 0.75 gvh: 0.29 alm: 0.64 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.02
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
28.0 %: cytoplasmic
16.0 %: cytoskeletal
8.0 %: mitochondrial

>> prediction for SLB126 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLB126E
Full length Seq.
>SLB126E.Seq
GAAAGCAAGATGTGATGATGTCGAATGTCCAGATTTCCATAGATGTGTTGAAAGACGTGG
TGGTATCTTAAGTTGTGAATTTGATCCACCAAGACAACCAAGATCCCTTGATTGGGCTGA
AAATGAAAATGATGATCGTGACTATGATGATCGTGACTATGATGATGATGAATATGATGG
TGATTATGATGGCCGTGACGGTGACTATGATGGTGATTATGATGGTGATTATGATGATGA
CAATTATTATGGTGATGATGACTATGATAATGATTGGGACAATGATAATGATTGGGGTAA
TGATTGGGATAATGATTGGGACAATGAAGATGGTGATAATTGGAATGATGATGACTTCCA
AGATGCAAATGATGAATGGGACTATTAAGCCATTAATTTTTTAAAAAAAATAATAATAAT
ATTAATACAAATAATTTTTTAAAAAAAAAAAAAG
Length of full length seq. 454