SLB117 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

SLB117
Library	SL (Link to library)
Clone ID	SLB117 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U12428-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/SL/SLB1-A/SLB117Q.Seq.d/
Representative seq. ID	SLB117P (Link to Original site)
Representative DNA sequence	>SLB117 (SLB117Q) /CSM/SL/SLB1-A/SLB117Q.Seq.d/ CAACAACAACATCAACAAGGTAGACCAAACGGTGCTCAATTCACTCCATATCAATCTTCA GCTGCATCTGGTGCTGCTTCATCACATAGATCTTCATATTATAATGGTCAAAAACAATGG TCAANAAATTATAACAAGAACAATAACAGTAACAGTAACTATGAACAACAACAACAAGCC CAACAACAACAACAACAACAACAACAAGCCCAACAACAACAACAACAACAACAACCAGCT ACCACCACTGGAAATGGTGAACGTAAACACTATCAACGTGGTCCAAAAGATTCATCAAGA CCACCAAGAAGAGATTTTAATAATACATATAACAACAACAACAATAATAATAATAGTCAT TTTTCAAATAGCAATAATAATAGTACTACCCCAAAAGAAAATATAAATAATAATACAGAG AATACAGAAAATAAACCAACTAATACAAATACAGAAAAGCGTCATACACAAAGAAAACCA AAACATATTTCACACCATAATAATAATAATAGCAATAATAATAGCAATAATAATAATACA ACCACCTCAACTGCTACCACTTCAACCCCAACCACAACTACCGCTTCACCATCATCACCA ACCACCACTACAACCACTACAACCACCACTGCTACAACTTCAACTACCACCACCAATACC GAAAGAGAATCATCAGTTTCTAATAAACCAXXXXXXXXXXGCCAAAAGGCAGCAACTGTT GTTGTACCACCAGGTCCACAACATTTCCCACCTTTAAATGGAAGTGAACAACAAACATCT GTTGTTGAAACTAAAAAAATGGAATGGGGTCCAGCCGATAAAAAAGCGTATTACCAGTTG AAACCACTGTAGTTTCACCACCAACAACAACAACAACAACTCCAGTTGCACCAACTTCAA ATGTTGCTGCTTCATCATCATCAACTGCTACCGCTACTCCAACTACAACAACCACCACTC AAACCGCAGCTTCAACCAATGCTCCATCAAACAAAAAATCAACCACTCAATCATCTCAAC CAAAGAAATCACCATCAAAAGTTGAAGATAAATCGAAAACCGCACCAACTCCAGCTGCCC CAGTCACCACTGCCACCACCACTGATTCTTCAAACGAAAAGAAGCAACCAACCTATGCTG ATATGATCGCTATGGCATCAAATAACACTTTACCAGTTGCTCCAGTCGTCACTGTTGTCA CTGAAACCAATGCCACTCCAGTCGAACAACAATAAACTTATCAATAACCAACAAAAAA
sequence update	1998.12.24
Translated Amino Acid sequence	QQQHQQGRPNGAQFTPYQSSAASGAASSHRSSYYNGQKQWSXNYNKNNNSNSNYEQQQQA QQQQQQQQQAQQQQQQQQPATTTGNGERKHYQRGPKDSSRPPRRDFNNTYNNNNNNNNSH FSNSNNNSTTPKENINNNTENTENKPTNTNTEKRHTQRKPKHISHHNNNNSNNNSNNNNT TTSTATTSTPTTTTASPSSPTTTTTTTTTTATTSTTTTNTERESSVSNKP--- ---QKAATVVVPPGPQHFPPLNGSEQQTSVVETKKMEWGPADKKAYYQLKPLfhhqqqq qqlqlhqlqmlllhhhqllpllqlqqpplkpqlqpmlhqtknqplnhlnqrnhhqklkin rkphqlqlpqsplppplilqtkrsnqpmlislwhqitlyqllqssllslkpmplqsnnn klinnqqk
Translated Amino Acid sequence (All Frames)	Frame A: QQQHQQGRPNGAQFTPYQSSAASGAASSHRSSYYNGQKQWSXNYNKNNNSNSNYEQQQQA QQQQQQQQQAQQQQQQQQPATTTGNGERKHYQRGPKDSSRPPRRDFNNTYNNNNNNNNSH FSNSNNNSTTPKENINNNTENTENKPTNTNTEKRHTQRKPKHISHHNNNNSNNNSNNNNT TTSTATTSTPTTTTASPSSPTTTTTTTTTTATTSTTTTNTERESSVSNKP--- ---akrqqlllyhqvhnishlmevnnkhlllklkkwngvqpikkritsnhcsfttnnn nnnssctnfkcccfiiincyrysnynnhhsnrsfnqcsikqkinhsiistkeitiksr ienrtnsscpshhchhhffkrkeatnlcydrygikhftscssrhcchnqchssrtt inlsitnkk Frame B: nnninkvdqtvlnslhinlqlhlvllhhidlhiimvknngqxiitrtitvtvtmnnnnkp nnnnnnnnkpnnnnnnnnqlpplemvnvntinvvqkihqdhqeeiliihittttiiiivi fqiaiiivlpqkkiiiiqriqkinqliqiqksvihkenqnifhtiiiiiaiiiaiiiiq ppqllplqpqpqlplhhhhqpplqplqppllqlqlpppipkenhqflin--- ---pkgsncccttrsttfptfkwkttniccnkngmgssrksvlpvettvvsppttt tttpvaptsnvaasssstatatpttttttqtaastnapsnkksttqssqpkkspskvedk sktaptpaapvttatttdssnekkqptyadmiamasnntlpvapvvtvvtetnatpveqq tyqptk Frame C: tttstrtkrcsihsisifsciwccfitifilwsktmvxklqeqqqlttttsp ttttttttspttttttttsyhhwkwttlstwskrfikttkkrfyiqqqq***sf fkq*yypkrkykyreyrktnykyrkasytkktktyftp***qqyn hlncyhfnpnhnyrftiitnhhynhynhhcynfnyhhqyrkriisft--- ---QKAATVVVPPGPQHFPPLNGSEQQTSVVETKKMEWGPADKKAYYQLKPLfhhqqqq qqlqlhqlqmlllhhhqllpllqlqqpplkpqlqpmlhqtknqplnhlnqrnhhqklkin rkphqlqlpqsplppplilqtkrsnqpmlislwhqitlyqllqssllslkpmplqsnnn klinnqqk
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value SLB117 (SLB117Q) /CSM/SL/SLB1-A/SLB117Q.Seq.d/ 749 0.0 SLK579 (SLK579Q) /CSM/SL/SLK5-D/SLK579Q.Seq.d/ 500 e-140 VFJ288 (VFJ288Q) /CSM/VF/VFJ2-D/VFJ288Q.Seq.d/ 412 e-114 SLD513 (SLD513Q) /CSM/SL/SLD5-A/SLD513Q.Seq.d/ 398 e-110 SLD518 (SLD518Q) /CSM/SL/SLD5-A/SLD518Q.Seq.d/ 396 e-109 VHO262 (VHO262Q) /CSM/VH/VHO2-C/VHO262Q.Seq.d/ 323 4e-87 VHD390 (VHD390Q) /CSM/VH/VHD3-D/VHD390Q.Seq.d/ 307 2e-82 SLK660 (SLK660Q) /CSM/SL/SLK6-C/SLK660Q.Seq.d/ 299 5e-80 AFE627 (AFE627Q) /CSM/AF/AFE6-B/AFE627Q.Seq.d/ 48 3e-04 SLE469 (SLE469Q) /CSM/SL/SLE4-C/SLE469Q.Seq.d/ 46 0.001
own update	2002.12.10
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N (AU033512) Dictyostelium discoideum slug cDNA, clone SLB117. 432 0.0 4 (BJ432820) Dictyostelium discoideum cDNA clone:ddv19o22, 3' ... 204 e-152 6 (AU060688) Dictyostelium discoideum slug cDNA, clone SLB117. 254 e-131 5 (BJ445497) Dictyostelium discoideum cDNA clone:ddv59k16, 3' ... 204 e-130 5 (BJ438392) Dictyostelium discoideum cDNA clone:ddv37d23, 3' ... 204 e-128 5 (AU054089) Dictyostelium discoideum slug cDNA, clone SLK579. 432 e-116 1 (AU061193) Dictyostelium discoideum slug cDNA, clone SLD513. 398 e-106 1 (AU060623) Dictyostelium discoideum slug cDNA, clone SLK660. 254 e-102 2 (AU061195) Dictyostelium discoideum slug cDNA, clone SLD518. 305 2e-78 1 (C83988) Dictyostelium discoideum slug cDNA, clone SLK660. 283 8e-76 2
dna update	2009. 1.30
Homology vs Protein	*** No hits found **** Lambda K H 0.314 0.128 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3101297 Number of Hits to DB: 869,955,144
protein update	2009. 5.31
PSORT	psg: 0.85 gvh: 0.39 alm: 0.57 top: 0.50 tms: 0.00 mit: 0.40 mip: 0.06 nuc: 0.10 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 52.0 %: nuclear 28.0 %: mitochondrial 8.0 %: cytoskeletal 8.0 %: cytoplasmic 4.0 %: peroxisomal >> prediction for SLB117 is nuc
5' end seq. ID	SLB117F
5' end seq.	>SLB117F.Seq CAACAACAACATCAACAAGGTAGACCAAACGGTGCTCAATTCACTCCATATCAATCTTCA GCTGCATCTGGTGCTGCTTCATCACATAGATCTTCATATTATAATGGTCAAAAACAATGG TCAANAAATTATAACAAGAACAATAACAGTAACAGTAACTATGAACAACAACAACAAGCC CAACAACAACAACAACAACAACAACAAGCCCAACAACAACAACAACAACAACAACCAGCT ACCACCACTGGAAATGGTGAACGTAAACACTATCAACGTGGTCCAAAAGATTCATCAAGA CCACCAAGAAGAGATTTTAATAATACATATAACAACAACAACAATAATAATAATAGTCAT TTTTCAAATAGCAATAATAATAGTACTACCCCAAAAGAAAATATAAATAATAATACAGAG AATACAGAAAATAAACCAACTAATACAAATACAGAAAAGCGTCATACACAAAGAAAACCA AAACATATTTCACACCATAATAATAATAATAGCAATAATAATAGCAATAATAATAATACA ACCACCTCAACTGCTACCACTTCAACCCCAACCACAACTACCGCTTCACCATCATCACCA ACCACCACTACAACCACTACAACCACCACTGCTACAACTTCAACTACCACCACCAATACC GAAAGAGAATCATCAGTTTCTAATAAACCA----------
Length of 5' end seq.	690
3' end seq. ID	SLB117Z
3' end seq.	>SLB117Z.Seq ----------GCCAAAAGGCAGCAACTGTTGTTGTACCACCAGGTCCACAACATTTCCCA CCTTTAAATGGAAGTGAACAACAAACATCTGTTGTTGAAACTAAAAAAATGGAATGGGGT CCAGCCGATAAAAAAGCGTATTACCAGTTGAAACCACTGTAGTTTCACCACCAACAACAA CAACAACAACTCCAGTTGCACCAACTTCAAATGTTGCTGCTTCATCATCATCAACTGCTA CCGCTACTCCAACTACAACAACCACCACTCAAACCGCAGCTTCAACCAATGCTCCATCAA ACAAAAAATCAACCACTCAATCATCTCAACCAAAGAAATCACCATCAAAAGTTGAAGATA AATCGAAAACCGCACCAACTCCAGCTGCCCCAGTCACCACTGCCACCACCACTGATTCTT CAAACGAAAAGAAGCAACCAACCTATGCTGATATGATCGCTATGGCATCAAATAACACTT TACCAGTTGCTCCAGTCGTCACTGTTGTCACTGAAACCAATGCCACTCCAGTCGAACAAC AATAAACTTATCAATAACCAACAAAAAA
Length of 3' end seq.	558
Connected seq. ID	SLB117P
Connected seq.	>SLB117P.Seq CAACAACAACATCAACAAGGTAGACCAAACGGTGCTCAATTCACTCCATATCAATCTTCA GCTGCATCTGGTGCTGCTTCATCACATAGATCTTCATATTATAATGGTCAAAAACAATGG TCAANAAATTATAACAAGAACAATAACAGTAACAGTAACTATGAACAACAACAACAAGCC CAACAACAACAACAACAACAACAACAAGCCCAACAACAACAACAACAACAACAACCAGCT ACCACCACTGGAAATGGTGAACGTAAACACTATCAACGTGGTCCAAAAGATTCATCAAGA CCACCAAGAAGAGATTTTAATAATACATATAACAACAACAACAATAATAATAATAGTCAT TTTTCAAATAGCAATAATAATAGTACTACCCCAAAAGAAAATATAAATAATAATACAGAG AATACAGAAAATAAACCAACTAATACAAATACAGAAAAGCGTCATACACAAAGAAAACCA AAACATATTTCACACCATAATAATAATAATAGCAATAATAATAGCAATAATAATAATACA ACCACCTCAACTGCTACCACTTCAACCCCAACCACAACTACCGCTTCACCATCATCACCA ACCACCACTACAACCACTACAACCACCACTGCTACAACTTCAACTACCACCACCAATACC GAAAGAGAATCATCAGTTTCTAATAAACCA----------GCCAAAAGGCAGCAACTGTT GTTGTACCACCAGGTCCACAACATTTCCCACCTTTAAATGGAAGTGAACAACAAACATCT GTTGTTGAAACTAAAAAAATGGAATGGGGTCCAGCCGATAAAAAAGCGTATTACCAGTTG AAACCACTGTAGTTTCACCACCAACAACAACAACAACAACTCCAGTTGCACCAACTTCAA ATGTTGCTGCTTCATCATCATCAACTGCTACCGCTACTCCAACTACAACAACCACCACTC AAACCGCAGCTTCAACCAATGCTCCATCAAACAAAAAATCAACCACTCAATCATCTCAAC CAAAGAAATCACCATCAAAAGTTGAAGATAAATCGAAAACCGCACCAACTCCAGCTGCCC CAGTCACCACTGCCACCACCACTGATTCTTCAAACGAAAAGAAGCAACCAACCTATGCTG ATATGATCGCTATGGCATCAAATAACACTTTACCAGTTGCTCCAGTCGTCACTGTTGTCA CTGAAACCAATGCCACTCCAGTCGAACAACAATAAACTTATCAATAACCAACAAAAAA
Length of connected seq.	1248
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas