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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLB112
Library SL
(Link to library)
Clone ID SLB112
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U01107-1
Original site URL
Representative seq. ID SLB112P
(Link to Original site)
Representative DNA sequence 
>SLB112 (SLB112Q) /CSM/SL/SLB1-A/SLB112Q.Seq.d/
AACAACAACAACAACAACAACAATTACAACAACAACAATCACCAAAGAAAACAATAATTC
AAAAATATAATGAAGATTTAGATGATATGGTAATTAAAACATATACAACCAGATTGGTAT
TGACATGGATTTATAATAATCCAACACCACCAATTTTATCACCATTACCAAAATTAAAAG
TTATACCAAATTCTAGTTCATCTAAACAATTTTCCAATAAAACATTACATACATCAACTC
ATACATTCCAAGATATTGAATCATACGTTAAGGAGGTATTCGACCTTTGGGATACAGTTT
TATCATTTTTTTATTCTCAACATATTAAACGTTCAAAAGCATACTATCAAAATGTAAAAC
AATCACCACAAAATGTTGAATCTGATCACACTGTAAAATTAACTTTAAAATCAATTTTAA
TTGGTTCAATTTATTATTCCGATATATTTTTTAGAAAATCTTCTGTTTTAAAACCAAAAT
CAAATTTTACAATTTTAGATATTGTAATTTCAAGTATTAATCTTTCAATTAAAATGTGGT
TAGAAGAAAAAATGTCAGTTAATAAATATCTATCAGAAATATTTGGAGTATCTCTGGTTC
ATGTAAATAGTTTAGAAAGATATTTTTTAACTTTAATTGACTATCAATTATATCTTCACG
AGAAGGATATTCCAATCATTTGCAAATATCATTCATAAAXXXXXXXXXXATAATAATAAT
AATAATAATAATAATAATTGCGCCAATAAGATATCAATTCAAGTGTATAGTTGTAATAAT
AATGATAGTGTAAATAGTTCACCATTACCATGTTCGGTTAGTGGGGCAAGTAGTAATCAT
TATAATATCAATCATGGATATATTAGTGGTGGTGAATCATCATCATCTTCATCATCATCT
TCATCATCAAATTCTTCACCCTCTGTATTAGTAGTACCTTCATCACCAATTAAATCATTT
ATACAATCTTCTTCATCATCGTCCGCTTCTTCTGCATCACCATCATCAATTTCACCAAAG
AAAAGATACCTTTCAATATCAAGATCTTCATCTTGTTCGTCAAATATAAATACACCAATT
GCAACCTCCTCACCTTCAACTTGTACAGTACCAAATTCAATTCATCATGATGACTATCAA
GATCAACCAAAGAAAAGAATAAANGCAATCGTGGCCTAAAAAAATAATATAAAAATAA
sequence update 1998.12.24
Translated Amino Acid sequence 
nnnnnnnnynnnnhqrkq*fknimki*miw*lkhiqpdwy*hgfiiiqhhqfyhhyqn*k
lyqilvhlnnfpikhyihqlihskilnhtlrrystfgiqfyhffilnilnvqkhtikm*n
nhhkmlnlitl*n*l*nqf*lvqfiipiyflenllf*nqnqilqf*il*fqvlifqlkcg
*kkkcqliniyqkyleylwfm*iv*kdif*l*LTINYIFTRRIFQSFANIIHK---

---NNNNNNNNNCANKISIQVYSCNNNDSVNSSPLPCSVSGASSNHYNINHGYISGGESS
SSSSSSSSSNSSPSVLVVPSSPIKSFIQSSSSSSASSASPSSISPKKRYLSISRSSSCSS
NINTPIATSSPSTCTVPNSIHHDDYQDQPKKRIXAIVA*knniki
Translated Amino Acid sequence (All Frames) 
Frame A:
nnnnnnnnynnnnhqrkq*fknimki*miw*lkhiqpdwy*hgfiiiqhhqfyhhyqn*k
lyqilvhlnnfpikhyihqlihskilnhtlrrystfgiqfyhffilnilnvqkhtikm*n
nhhkmlnlitl*n*l*nqf*lvqfiipiyflenllf*nqnqilqf*il*fqvlifqlkcg
*kkkcqliniyqkyleylwfm*iv*kdif*l*LTINYIFTRRIFQSFANIIHK---

---iiiiiiiiiiapiryqfkcivviimiv*ivhhyhvrlvgqvviiiisimdilvvvnh
hhlhhhlhhqilhply**ylhhqlnhlynllhhrplllhhhhqfhqrkdtfqyqdlhlvr
qi*ihqlqpphlqlvqyqiqfimmtikinqrke*xqswpkkii*k*

Frame B:
tttttttittttitkennnski**rfr*ygn*niynqigidmdl**snttnfititkiks
ytkf*fi*tifq*nityinsyipry*iir*ggirplgysfiiflfsty*tfksilskckt
ittkc*i*shckinfkinfnwfnllfryif*kifcfktkikfynfrycnfky*sfn*nvv
rrknvs**isirniwsisgsck*frkiffnfn*lsiissregysnhlqisfi---

---*********lrq*dinssv*l*****ck*ftitmfg*wgk**sl*yqswiy*ww*ii
iifiiifiikfftlcisstfitn*iiytiffiivrffcitiinftkekipfnikifilfv
kykytncnlltfnlystkfnss**lsrstkeknkxnrglkk*ykn

Frame C:
qqqqqqqlqqqqspkktiiqkynedlddmviktyttrlvltwiynnptppilsplpklkv
ipnsssskqfsnktlhtsthtfqdiesyvkevfdlwdtvlsffysqhikrskayyqnvkq
spqnvesdhtvkltlksiligsiyysdiffrkssvlkpksnftildivissinlsikmwl
eekmsvnkylseifgvslvhvnsleryfltlidyqlylhekdipiickyhs*---

---NNNNNNNNNCANKISIQVYSCNNNDSVNSSPLPCSVSGASSNHYNINHGYISGGESS
SSSSSSSSSNSSPSVLVVPSSPIKSFIQSSSSSSASSASPSSISPKKRYLSISRSSSCSS
NINTPIATSSPSTCTVPNSIHHDDYQDQPKKRIXAIVA*knniki
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLB112 (SLB112Q) /CSM/SL/SLB1-A/SLB112Q.Seq.d/                       1269   0.0
SLA328 (SLA328Q) /CSM/SL/SLA3-B/SLA328Q.Seq.d/                        480   e-134
SLA320 (SLA320Q) /CSM/SL/SLA3-A/SLA320Q.Seq.d/                        313   3e-84
CHP585 (CHP585Q) /CSM/CH/CHP5-D/CHP585Q.Seq.d/                         46   0.001
AHM449 (AHM449Q) /CSM/AH/AHM4-C/AHM449Q.Seq.d/                         46   0.001
SHD770 (SHD770Q) /CSM/SH/SHD7-C/SHD770Q.Seq.d/                         44   0.005
AHF807 (AHF807Q) /CSM/AH/AHF8-A/AHF807Q.Seq.d/                         44   0.005
VHI702 (VHI702Q) /CSM/VH/VHI7-A/VHI702Q.Seq.d/                         42   0.019
SSI418 (SSI418Q) /CSM/SS/SSI4-A/SSI418Q.Seq.d/                         42   0.019
SFE765 (SFE765Q) /CSM/SF/SFE7-C/SFE765Q.Seq.d/                         42   0.019
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU060686) Dictyostelium discoideum slug cDNA, clone SLB112.      767   0.0    2
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...   525   0.0    7
(AU033507) Dictyostelium discoideum slug cDNA, clone SLB112.      525   0.0    3
(AU040054) Dictyostelium discoideum slug cDNA, clone SLA328.      258   e-140  4
(AU060103) Dictyostelium discoideum slug cDNA, clone SLA320.      258   4e-64  1
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    34   0.007  17
(FD030949) CBCZ3518.b1 CBCZ: cDNA library made from Channel ...    38   0.040  2
(AC172645) Bos taurus clone CH240-263I17, WORKING DRAFT SEQU...    52   0.049  1
(DV394388) NADB449TF Aedes aegypti infected with Dengue viru...    52   0.049  1
(DV385237) NADC838TF Aedes aegypti infected with Dengue viru...    52   0.049  1
dna update 2009. 1.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116957_41(AC116957|pid:none) Dictyostelium discoideum chromoso...   160   1e-37
AF237589_1(AF237589|pid:none) Trypanosoma cruzi cyclin 5 (cyc5) ...    44   0.014
AJ416697_1(AJ416697|pid:none) Plasmodium falciparum cyc-3 gene f...    43   0.019
DQ487557_1(DQ487557|pid:none) Arabidopsis thaliana clone 0000003...    38   0.60
(Q9FKF6) RecName: Full=Cyclin-U4-3;          Short=CycU4;3; AltN...    37   1.7
AX027424_1(AX027424|pid:none) Sequence 35 from Patent WO0036124.       37   1.7
AE014188_356(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    37   1.7
CR382130_861(CR382130|pid:none) Yarrowia lipolytica strain CLIB1...    36   3.0
CP000733_1288(CP000733|pid:none) Coxiella burnetii Dugway 5J108-...    35   3.9
AM285305_135(AM285305|pid:none) Spiroplasma citri GII3-3X chromo...    35   6.6
protein update 2009. 5.31
PSORT 

 psg: 0.83  gvh: 0.52  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.41  mip: 0.22
 nuc: 0.18  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: mitochondrial
	 40.0 %: nuclear
	  8.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for SLB112 is mit
5' end seq. ID SLB112F
5' end seq. 
>SLB112F.Seq
AACAACAACAACAACAACAACAATTACAACAACAACAATCACCAAAGAAAACAATAATTC
AAAAATATAATGAAGATTTAGATGATATGGTAATTAAAACATATACAACCAGATTGGTAT
TGACATGGATTTATAATAATCCAACACCACCAATTTTATCACCATTACCAAAATTAAAAG
TTATACCAAATTCTAGTTCATCTAAACAATTTTCCAATAAAACATTACATACATCAACTC
ATACATTCCAAGATATTGAATCATACGTTAAGGAGGTATTCGACCTTTGGGATACAGTTT
TATCATTTTTTTATTCTCAACATATTAAACGTTCAAAAGCATACTATCAAAATGTAAAAC
AATCACCACAAAATGTTGAATCTGATCACACTGTAAAATTAACTTTAAAATCAATTTTAA
TTGGTTCAATTTATTATTCCGATATATTTTTTAGAAAATCTTCTGTTTTAAAACCAAAAT
CAAATTTTACAATTTTAGATATTGTAATTTCAAGTATTAATCTTTCAATTAAAATGTGGT
TAGAAGAAAAAATGTCAGTTAATAAATATCTATCAGAAATATTTGGAGTATCTCTGGTTC
ATGTAAATAGTTTAGAAAGATATTTTTTAACTTTAATTGACTATCAATTATATCTTCACG
AGAAGGATATTCCAATCATTTGCAAATATCATTCATAAA----------
Length of 5' end seq. 699
3' end seq. ID SLB112Z
3' end seq. 
>SLB112Z.Seq
----------ATAATAATAATAATAATAATAATAATAATTGCGCCAATAAGATATCAATT
CAAGTGTATAGTTGTAATAATAATGATAGTGTAAATAGTTCACCATTACCATGTTCGGTT
AGTGGGGCAAGTAGTAATCATTATAATATCAATCATGGATATATTAGTGGTGGTGAATCA
TCATCATCTTCATCATCATCTTCATCATCAAATTCTTCACCCTCTGTATTAGTAGTACCT
TCATCACCAATTAAATCATTTATACAATCTTCTTCATCATCGTCCGCTTCTTCTGCATCA
CCATCATCAATTTCACCAAAGAAAAGATACCTTTCAATATCAAGATCTTCATCTTGTTCG
TCAAATATAAATACACCAATTGCAACCTCCTCACCTTCAACTTGTACAGTACCAAATTCA
ATTCATCATGATGACTATCAAGATCAACCAAAGAAAAGAATAAANGCAATCGTGGCCTAA
AAAAATAATATAAAAATAA
Length of 3' end seq. 489
Connected seq. ID SLB112P
Connected seq. 
>SLB112P.Seq
AACAACAACAACAACAACAACAATTACAACAACAACAATCACCAAAGAAAACAATAATTC
AAAAATATAATGAAGATTTAGATGATATGGTAATTAAAACATATACAACCAGATTGGTAT
TGACATGGATTTATAATAATCCAACACCACCAATTTTATCACCATTACCAAAATTAAAAG
TTATACCAAATTCTAGTTCATCTAAACAATTTTCCAATAAAACATTACATACATCAACTC
ATACATTCCAAGATATTGAATCATACGTTAAGGAGGTATTCGACCTTTGGGATACAGTTT
TATCATTTTTTTATTCTCAACATATTAAACGTTCAAAAGCATACTATCAAAATGTAAAAC
AATCACCACAAAATGTTGAATCTGATCACACTGTAAAATTAACTTTAAAATCAATTTTAA
TTGGTTCAATTTATTATTCCGATATATTTTTTAGAAAATCTTCTGTTTTAAAACCAAAAT
CAAATTTTACAATTTTAGATATTGTAATTTCAAGTATTAATCTTTCAATTAAAATGTGGT
TAGAAGAAAAAATGTCAGTTAATAAATATCTATCAGAAATATTTGGAGTATCTCTGGTTC
ATGTAAATAGTTTAGAAAGATATTTTTTAACTTTAATTGACTATCAATTATATCTTCACG
AGAAGGATATTCCAATCATTTGCAAATATCATTCATAAA----------ATAATAATAAT
AATAATAATAATAATAATTGCGCCAATAAGATATCAATTCAAGTGTATAGTTGTAATAAT
AATGATAGTGTAAATAGTTCACCATTACCATGTTCGGTTAGTGGGGCAAGTAGTAATCAT
TATAATATCAATCATGGATATATTAGTGGTGGTGAATCATCATCATCTTCATCATCATCT
TCATCATCAAATTCTTCACCCTCTGTATTAGTAGTACCTTCATCACCAATTAAATCATTT
ATACAATCTTCTTCATCATCGTCCGCTTCTTCTGCATCACCATCATCAATTTCACCAAAG
AAAAGATACCTTTCAATATCAAGATCTTCATCTTGTTCGTCAAATATAAATACACCAATT
GCAACCTCCTCACCTTCAACTTGTACAGTACCAAATTCAATTCATCATGATGACTATCAA
GATCAACCAAAGAAAAGAATAAANGCAATCGTGGCCTAAAAAAATAATATAAAAATAA
Length of connected seq. 1188
Full length Seq ID -
Full length Seq. -
Length of full length seq. -