AFK102
Library AF
(Link to library)
Clone ID AFK102
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFK102P
(Link to Original site)
Representative DNA sequence
>AFK102 (AFK102Q) /CSM/AF/AFK1-A/AFK102Q.Seq.d/
TTTCTGCCAATCCATNCATATTTATAATTATATCTTTTTTGTTTAATAAAAAAGAAAGAA
TACCAACATGAGACTTTTATTGTGTTTAATTTTCTTAGTTTTTGTTTTCAATTTTGCATT
ATCAACAGTTCATTTCAAAGATACCTTTGATAACGATTGGGAATCAAGATGGGTTGTTAG
TGATTGGCATAAAGAAGATGGTAAATCAGGTAAATTAGTTCATACTGCAGGTAAATGGTT
TGGTGATGAAAATCAAAAAGGTATTCAAACTAGTGAAGATGCTCGTTTCTACGCTGTATC
AGCTAAATTCCCAAGTTTCAGTAACAAAGGTAAAGATTTAGTTCTCCAATACACTGTAAA
GAATGAACAAAAAGTTGATTGTGGTGGTTCATACATCAAGTTATTACCATCCAAATTAGA
TCAATCAGCATTCGATGGTGAATCTGAATATTCCATTATGTTNGGNCCAGATGTTTGTGG
NGCCTCAAAGAGAGTTCACGTCATTCTCAACTACAAAGGAAAGAACCATTTAATCAAGAA
AGAAATCXXXXXXXXXXAGAAGATGTTAAACCAGCCGGTCATGACGATATCCCAGCTTCA
ATCGTTGATCCAGAAGCTGTCAAACCAGAGGATTGGAATGAAGAAGACGACGGTGAATGG
GAAGCCCCAACCATCGCCAATCCAGAATACAAAGGTGAATGGAAAGCAAAGAAAATCCCA
AATCCAGAATACAAAGGTGAATGGGTACACCCATTAATTGATAACCCAGAATACGCTGAA
GACAATGAACTCTACCTCTTTAATGATCTCGGTGCTATCGGTTTCGAATTATGGCAAGTT
AAACCTGGTTCCATCTTTAACAATATGATCGTCACCGACTCTGTCGAAGAAGCTAAAGAT
TTCTCTGAAAAGACCTTTGTTGCCAACCAAGAAGCCGAAAAGAAAATGTTTGACGACCTC
GAAGCCGCCAAAGCTGAAGAGAGAAAGAAAGCTGACGAAAAATTAGCTGCCGAAAAAGCT
GCTGAAAAAGAAGCCGAAGAAGCTGATGAAGAAGAAGAAGAAGTCGCTGAAGAAGATT
sequence update 2001. 6. 1
Translated Amino Acid sequence
fcqsxhiynyiffv**KRKNTNMRLLLCLIFLVFVFNFALSTVHFKDTFDNDWESRWVVS
DWHKEDGKSGKLVHTAGKWFGDENQKGIQTSEDARFYAVSAKFPSFSNKGKDLVLQYTVK
NEQKVDCGGSYIKLLPSKLDQSAFDGESEYSIMXGPDVCGASKRVHVILNYKGKNHLIKK
EI---

---EDVKPAGHDDIPASIVDPEAVKPEDWNEEDDGEWEAPTIANPEYKGEWKAKKIPNPE
YKGEWVHPLIDNPEYAEDNELYLFNDLGAIGFELWQVKPGSIFNNMIVTDSVEEAKDFSE
KTFVANQEAEKKMFDDLEAAKAEERKKADEKLAAEKAAEKEAEEADEEEEEVAEED


Translated Amino Acid sequence (All Frames)
Frame A:
flpihxyl*lylfclikkkeyqhetfivfnflsfcfqfciinssfqryl**rlgikmgc*
*la*rrw*ir*issycr*mvw**kskrysn**rcsflrcis*ipkfq*qr*rfsspihck
e*tks*lwwfihqvitiqirsisirw*i*ifhyvxxrclwxlkessrhsqlqrkepfnqe
rn---

---rrc*tsrs*rypsfnr*srscqtrgle*rrrr*mgspnhrqsriqr*meskenpksr
iqr*mgtpin**prir*rq*tlpl**srcyrfrimas*twfhl*qydrhrlcrrs*rfl*
kdlccqprsrkenv*rprsrqs*rekes*rkiscrksc*krsrrs**rrrrsr*rr

Frame B:
fcqsxhiynyiffv**KRKNTNMRLLLCLIFLVFVFNFALSTVHFKDTFDNDWESRWVVS
DWHKEDGKSGKLVHTAGKWFGDENQKGIQTSEDARFYAVSAKFPSFSNKGKDLVLQYTVK
NEQKVDCGGSYIKLLPSKLDQSAFDGESEYSIMXGPDVCGASKRVHVILNYKGKNHLIKK
EI---

---EDVKPAGHDDIPASIVDPEAVKPEDWNEEDDGEWEAPTIANPEYKGEWKAKKIPNPE
YKGEWVHPLIDNPEYAEDNELYLFNDLGAIGFELWQVKPGSIFNNMIVTDSVEEAKDFSE
KTFVANQEAEKKMFDDLEAAKAEERKKADEKLAAEKAAEKEAEEADEEEEEVAEED

Frame C:
sanpxifiiisflfnkkeript*dfycv*fs*flfsilhyqqfiskiplitignqdgllv
igikkmvnqvn*filqvnglvmkikkvfklvkmlvstlyqlnsqvsvtkvki*fsntl*r
mnkklivvvhtssyyhpn*inqhsmvnlniplcxxqmfvxpqreftsfsttkerti*srk
k---

---kmlnqpvmtisqlqsliqklsnqrigmkkttvngkpqpspiqntkvngkqrksqiqn
tkvngyth*litqntlktmnstslmisvlsvsnygklnlvpslti*ssptlskklkislk
rpllptkkpkrkclttskppklkrerkltkn*lpkkllkkkpkklmkkkkkslkki

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFK102 (AFK102Q) /CSM/AF/AFK1-A/AFK102Q.Seq.d/ 1661 0.0
VFM129 (VFM129Q) /CSM/VF/VFM1-B/VFM129Q.Seq.d/ 854 0.0
VFL130 (VFL130Q) /CSM/VF/VFL1-B/VFL130Q.Seq.d/ 854 0.0
VFK631 (VFK631Q) /CSM/VF/VFK6-B/VFK631Q.Seq.d/ 854 0.0
VFK516 (VFK516Q) /CSM/VF/VFK5-A/VFK516Q.Seq.d/ 854 0.0
VFI619 (VFI619Q) /CSM/VF/VFI6-A/VFI619Q.Seq.d/ 854 0.0
VFG242 (VFG242Q) /CSM/VF/VFG2-B/VFG242Q.Seq.d/ 854 0.0
VFE671 (VFE671Q) /CSM/VF/VFE6-C/VFE671Q.Seq.d/ 854 0.0
VFE283 (VFE283Q) /CSM/VF/VFE2-D/VFE283Q.Seq.d/ 854 0.0
VFE122 (VFE122Q) /CSM/VF/VFE1-A/VFE122Q.Seq.d/ 854 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U36937|U36937.1 Dictyostelium discoideum calreticulin mRNA, complete cds. 854 0.0 3
BH160872|BH160872.1 ENTRI18TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 80 1e-16 3
BD248385|BD248385.1 Gene participating in tolerance against environmental stress. 92 2e-14 1
BI921109|BI921109.1 EST541012 tomato callus Lycopersicon esculentum cDNA clone cLEC72A21 5' end, mRNA sequence. 74 6e-11 2
AZ543757|AZ543757.1 ENTGD24TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 80 7e-11 1
AI782264|AI782264.1 EST263143 tomato susceptible, Cornell Lycopersicon esculentum cDNA clone cLES18L5, mRNA sequence. 74 4e-09 1
AW033447|AW033447.1 EST277018 tomato callus, TAMU Lycopersicon esculentum cDNA clone cLEC28B21 similar to calreticulin, putative, mRNA sequence. 74 4e-09 1
AI489195|AI489195.1 EST247534 tomato ovary, TAMU Lycopersicon esculentum cDNA clone cLED17D1, mRNA sequence. 74 4e-09 1
AW649196|AW649196.1 EST327650 tomato germinating seedlings, TAMU Lycopersicon esculentum cDNA clone cLEI7M10 5', mRNA sequence. 74 4e-09 1
AW626316|AW626316.1 EST320223 tomato radicle, 5 d post-imbibition, Cornell University Lycopersicon esculentum cDNA clone cLEZ19K24 5', mRNA sequence. 74 4e-09 1
dna update 2003. 9. 7
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

U36937_1(U36937|pid:none) Dictyostelium discoideum calreticulin ... 300 7e-80
AC133339_28(AC133339|pid:none) Oryza sativa chromosome 3 BAC OSJ... 193 9e-48
U66344_1(U66344|pid:none) Arabidopsis thaliana calreticulin (Crt... 191 5e-47
U27698_1(U27698|pid:none) Arabidopsis thaliana calreticulin (AtC... 191 5e-47
(Q40401) RecName: Full=Calreticulin; Flags: Precursor; &T16968(... 191 5e-47
AB196794_1(AB196794|pid:none) Glycine max Gm crt-1 mRNA for calr... 189 2e-46
EF085019_1(EF085019|pid:none) Picea sitchensis clone WS0297_I16 ... 188 2e-46
EU984501_1(EU984501|pid:none) Nicotiana tabacum calreticulin mRN... 188 2e-46
AY086745_1(AY086745|pid:none) Arabidopsis thaliana clone 27210 m... 187 4e-46
AY836753_1(AY836753|pid:none) Triticum aestivum calreticulin-lik... 187 4e-46
protein update 2009. 4.24
PSORT

psg: 1.01 gvh: 0.69 alm: 0.47 top: 0.10 tms: 0.00 mit: 0.40 mip: 0.03
nuc: 0.06 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: extracellular, including cell wall
12.0 %: cytoplasmic
12.0 %: vacuolar
12.0 %: endoplasmic reticulum
8.0 %: nuclear
4.0 %: mitochondrial
4.0 %: Golgi

>> prediction for AFK102 is exc

5' end seq. ID AFK102F
5' end seq.
>AFK102F.Seq
TTTCTGCCAATCCATNCATATTTATAATTATATCTTTTTTGTTTAATAAAAAAGAAAGAA
TACCAACATGAGACTTTTATTGTGTTTAATTTTCTTAGTTTTTGTTTTCAATTTTGCATT
ATCAACAGTTCATTTCAAAGATACCTTTGATAACGATTGGGAATCAAGATGGGTTGTTAG
TGATTGGCATAAAGAAGATGGTAAATCAGGTAAATTAGTTCATACTGCAGGTAAATGGTT
TGGTGATGAAAATCAAAAAGGTATTCAAACTAGTGAAGATGCTCGTTTCTACGCTGTATC
AGCTAAATTCCCAAGTTTCAGTAACAAAGGTAAAGATTTAGTTCTCCAATACACTGTAAA
GAATGAACAAAAAGTTGATTGTGGTGGTTCATACATCAAGTTATTACCATCCAAATTAGA
TCAATCAGCATTCGATGGTGAATCTGAATATTCCATTATGTTNGGNCCAGATGTTTGTGG
NGCCTCAAAGAGAGTTCACGTCATTCTCAACTACAAAGGAAAGAACCATTTAATCAAGAA
AGAAATC----------
Length of 5' end seq. 547
3' end seq. ID AFK102Z
3' end seq.
>AFK102Z.Seq
----------AGAAGATGTTAAACCAGCCGGTCATGACGATATCCCAGCTTCAATCGTTG
ATCCAGAAGCTGTCAAACCAGAGGATTGGAATGAAGAAGACGACGGTGAATGGGAAGCCC
CAACCATCGCCAATCCAGAATACAAAGGTGAATGGAAAGCAAAGAAAATCCCAAATCCAG
AATACAAAGGTGAATGGGTACACCCATTAATTGATAACCCAGAATACGCTGAAGACAATG
AACTCTACCTCTTTAATGATCTCGGTGCTATCGGTTTCGAATTATGGCAAGTTAAACCTG
GTTCCATCTTTAACAATATGATCGTCACCGACTCTGTCGAAGAAGCTAAAGATTTCTCTG
AAAAGACCTTTGTTGCCAACCAAGAAGCCGAAAAGAAAATGTTTGACGACCTCGAAGCCG
CCAAAGCTGAAGAGAGAAAGAAAGCTGACGAAAAATTAGCTGCCGAAAAAGCTGCTGAAA
AAGAAGCCGAAGAAGCTGATGAAGAAGAAGAAGAAGTCGCTGAAGAAGATT
Length of 3' end seq. 521
Connected seq. ID AFK102P
Connected seq.
>AFK102P.Seq
TTTCTGCCAATCCATNCATATTTATAATTATATCTTTTTTGTTTAATAAAAAAGAAAGAA
TACCAACATGAGACTTTTATTGTGTTTAATTTTCTTAGTTTTTGTTTTCAATTTTGCATT
ATCAACAGTTCATTTCAAAGATACCTTTGATAACGATTGGGAATCAAGATGGGTTGTTAG
TGATTGGCATAAAGAAGATGGTAAATCAGGTAAATTAGTTCATACTGCAGGTAAATGGTT
TGGTGATGAAAATCAAAAAGGTATTCAAACTAGTGAAGATGCTCGTTTCTACGCTGTATC
AGCTAAATTCCCAAGTTTCAGTAACAAAGGTAAAGATTTAGTTCTCCAATACACTGTAAA
GAATGAACAAAAAGTTGATTGTGGTGGTTCATACATCAAGTTATTACCATCCAAATTAGA
TCAATCAGCATTCGATGGTGAATCTGAATATTCCATTATGTTNGGNCCAGATGTTTGTGG
NGCCTCAAAGAGAGTTCACGTCATTCTCAACTACAAAGGAAAGAACCATTTAATCAAGAA
AGAAATC----------AGAAGATGTTAAACCAGCCGGTCATGACGATATCCCAGCTTCA
ATCGTTGATCCAGAAGCTGTCAAACCAGAGGATTGGAATGAAGAAGACGACGGTGAATGG
GAAGCCCCAACCATCGCCAATCCAGAATACAAAGGTGAATGGAAAGCAAAGAAAATCCCA
AATCCAGAATACAAAGGTGAATGGGTACACCCATTAATTGATAACCCAGAATACGCTGAA
GACAATGAACTCTACCTCTTTAATGATCTCGGTGCTATCGGTTTCGAATTATGGCAAGTT
AAACCTGGTTCCATCTTTAACAATATGATCGTCACCGACTCTGTCGAAGAAGCTAAAGAT
TTCTCTGAAAAGACCTTTGTTGCCAACCAAGAAGCCGAAAAGAAAATGTTTGACGACCTC
GAAGCCGCCAAAGCTGAAGAGAGAAAGAAAGCTGACGAAAAATTAGCTGCCGAAAAAGCT
GCTGAAAAAGAAGCCGAAGAAGCTGATGAAGAAGAAGAAGAAGTCGCTGAAGAAGATT
Length of connected seq. 1068
Full length Seq ID -
Full length Seq. -
Length of full length seq. -