SLB109
Library SL
(Link to library)
Clone ID SLB109
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16455-1
Original site URL
Representative seq. ID SLB109Z
(Link to Original site)
Representative DNA sequence
>SLB109 (SLB109Q) /CSM/SL/SLB1-A/SLB109Q.Seq.d/
XXXXXXXXXXACTGAAGTCAAATCAGTCGAAATGCATCACGAACAACTCCCAGAAGCCCG
TCCAGGTGACAATGTAGGTTTCAACGTTAAAAACGTTTCAGTCAAAGAAATTAAAAGAGG
TATGGTCGCTGGTGACTCCAAAAACGATCCACCACAAGAAACTGAAAAATTCGTTGCTCA
AGTTATCGTCCTCAACCATCCAGGTCAAATCCATGCTGGTTACTCACCAGTCTTAGATTG
TCACACTGCTCACATTGCCTGTAAATTCACTGAAATCGTCGATAAAGTTGATCGTCGTAC
TGGTGCCGTCGTTGCCAAAGAAGGTACTGCCGCCGTCGTCTTAAAGAATGGTGATGCCGC
TATGGTCGAATTAACCCCATCTCGTCCAATGTGTGTTGAATCCTTCACTGAATACCCACC
ATTAGGTCGTTTCGCCGTCAGAGATATGAGACAAACCGTCGCCGTCGGTGTCATCAAATC
AACCGTCAAGAAAGCCCCAGGTAAAGCCGGTGATAAGAAAGGTGCTGCTGCCCCATCAAA
AAAGAAATAAATAAATAATATTTCTTAATAAATA
sequence update 1998. 3.20
Translated Amino Acid sequence
---EVKSVEMHHEQLPEARPGDNVGFNVKNVSVKEIKRGMVAGDSKNDPPQETEKFVAQV
IVLNHPGQIHAGYSPVLDCHTAHIACKFTEIVDKVDRRTGAVVAKEGTAAVVLKNGDAAM
VELTPSRPMCVESFTEYPPLGRFAVRDMRQTVAVGVIKSTVKKAPGKAGDKKGAAAPSKK
K*innis**i


Translated Amino Acid sequence (All Frames)
Frame A:
---lksnqskcitnnsqkpvqvtm*vstlktfqskklkevwslvtpktihhkklknsllk
lssstiqvksmlvthqs*ivtlltlpvnslkssiklivvlvpslpkkvlppss*rmvmpl
wsn*phlvqcvlnpslnthh*vvspsei*dkpspsvssnqpsrkpqvkpvirkvllphqk
rnk*iiflnk


Frame B:
---*sqisrnasrttprspsr*qcrfqr*krfsqrn*krygrw*lqkrsttrn*kircss
yrpqpsrsnpcwlltslrlshcshcl*ih*nrr*s*ssywcrrcqrrycrrrlkew*cry
grinpissnvc*ilh*iptirsfrrqryetnrrrrchqinrqespr*sr**ercccpikk
eink*yflin


Frame C:
---EVKSVEMHHEQLPEARPGDNVGFNVKNVSVKEIKRGMVAGDSKNDPPQETEKFVAQV
IVLNHPGQIHAGYSPVLDCHTAHIACKFTEIVDKVDRRTGAVVAKEGTAAVVLKNGDAAM
VELTPSRPMCVESFTEYPPLGRFAVRDMRQTVAVGVIKSTVKKAPGKAGDKKGAAAPSKK
K*innis**i


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSE380 (VSE380Q) /CSM/VS/VSE3-D/VSE380Q.Seq.d/ 1118 0.0
VSD312 (VSD312Q) /CSM/VS/VSD3-A/VSD312Q.Seq.d/ 1118 0.0
VFN474 (VFN474Q) /CSM/VF/VFN4-D/VFN474Q.Seq.d/ 1118 0.0
VFN472 (VFN472Q) /CSM/VF/VFN4-C/VFN472Q.Seq.d/ 1118 0.0
VFN448 (VFN448Q) /CSM/VF/VFN4-B/VFN448Q.Seq.d/ 1118 0.0
VFN340 (VFN340Q) /CSM/VF/VFN3-B/VFN340Q.Seq.d/ 1118 0.0
VFN291 (VFN291Q) /CSM/VF/VFN2-D/VFN291Q.Seq.d/ 1118 0.0
VFN256 (VFN256Q) /CSM/VF/VFN2-C/VFN256Q.Seq.d/ 1118 0.0
VFN174 (VFN174Q) /CSM/VF/VFN1-D/VFN174Q.Seq.d/ 1118 0.0
VFN108 (VFN108Q) /CSM/VF/VFN1-A/VFN108Q.Seq.d/ 1118 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU285021) Dictyostelium discoideum gamete cDNA clone:FCL-AA... 1118 0.0 1
(AU284628) Dictyostelium discoideum gamete cDNA clone:FC-BF1... 1118 0.0 1
(AU284420) Dictyostelium discoideum gamete cDNA clone:FC-AT2... 1118 0.0 1
(AU284342) Dictyostelium discoideum gamete cDNA clone:FC-AN0... 1118 0.0 1
(AU284225) Dictyostelium discoideum gamete cDNA clone:FC-AA2... 1118 0.0 1
(AU263821) Dictyostelium discoideum vegetative cDNA clone:VS... 1118 0.0 1
(AU263066) Dictyostelium discoideum vegetative cDNA clone:VS... 1118 0.0 1
(AU052273) Dictyostelium discoideum slug cDNA, clone SLA482. 1118 0.0 1
(AU052253) Dictyostelium discoideum slug cDNA, clone SLA434. 1118 0.0 1
(AU052252) Dictyostelium discoideum slug cDNA, clone SLA430. 1118 0.0 1
dna update 2009. 1.30
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

X55973_1(X55973|pid:none) D. discoideum EF1-I gene for elongatio... 321 1e-86
X55972_1(X55972|pid:none) D. discoideum EF1-II gene for elongati... 321 1e-86
(P18624) RecName: Full=Elongation factor 1-alpha; Short... 321 1e-86
AY542532_1(AY542532|pid:none) Cladonema radiatum translation elo... 249 4e-65
AJ581004_1(AJ581004|pid:none) Axinella verrucosa mRNA for elonga... 247 1e-64
(Q00251) RecName: Full=Elongation factor 1-alpha; Short... 246 2e-64
AY582829_1(AY582829|pid:none) Acanthamoeba culbertsoni ef1a gene... 246 3e-64
AB326305_1(AB326305|pid:none) Solea senegalensis SseEF1A4 mRNA f... 244 9e-64
Y09023_1(Y09023|pid:none) G.cydonium mRNA for elongation factor ... 244 9e-64
(P41745) RecName: Full=Elongation factor 1-alpha; Short... 244 1e-63
protein update 2009. 5.31
PSORT

psg: 0.75 gvh: 0.29 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.08 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
40.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for SLB109 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLB109Z
3' end seq.
>SLB109Z.Seq
----------ACTGAAGTCAAATCAGTCGAAATGCATCACGAACAACTCCCAGAAGCCCG
TCCAGGTGACAATGTAGGTTTCAACGTTAAAAACGTTTCAGTCAAAGAAATTAAAAGAGG
TATGGTCGCTGGTGACTCCAAAAACGATCCACCACAAGAAACTGAAAAATTCGTTGCTCA
AGTTATCGTCCTCAACCATCCAGGTCAAATCCATGCTGGTTACTCACCAGTCTTAGATTG
TCACACTGCTCACATTGCCTGTAAATTCACTGAAATCGTCGATAAAGTTGATCGTCGTAC
TGGTGCCGTCGTTGCCAAAGAAGGTACTGCCGCCGTCGTCTTAAAGAATGGTGATGCCGC
TATGGTCGAATTAACCCCATCTCGTCCAATGTGTGTTGAATCCTTCACTGAATACCCACC
ATTAGGTCGTTTCGCCGTCAGAGATATGAGACAAACCGTCGCCGTCGGTGTCATCAAATC
AACCGTCAAGAAAGCCCCAGGTAAAGCCGGTGATAAGAAAGGTGCTGCTGCCCCATCAAA
AAAGAAATAAATAAATAATATTTCTTAATAAATA
Length of 3' end seq. 564
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -