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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLA853
Library SL
(Link to library)
Clone ID SLA853
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15717-1
Original site URL
Representative seq. ID SLA853Z
(Link to Original site)
Representative DNA sequence 
>SLA853 (SLA853Q) /CSM/SL/SLA8-C/SLA853Q.Seq.d/
XXXXXXXXXXCTACAAGAAACGTGGTGTCAATTGGATCGTCGTTGGTGATGAAAACTATG
GTGAAGGTTCATCCCGTGAACATGCTGCCCTCGAACCACGTCATCTCGGTGGTAAAGCTA
TCCTCGTTAAATCATTTGCTCGTATCCACGAAACCAATCTCAAGAAACAAGGTATCTTAC
CATTAACCTTTGCTAACCCATCTGATTACGATAAACTCTCTGGTGACGATCGTATTTCAA
TCATTGGTCTCAAAGATCTTGCCCCAGGTAAACAACTCACTCTCATTGTTAAATCTGCTA
AACAAGGTTCTGAATTTGAAATTAAAGCTAATCACACCCTGAATGCTGGTCAAATCGAAT
GGTTCAAAGCTGGTTCCGCTTTAAATTATATTAAATCAGAAAAAGCCAAAAAAAATTAAA
TTTTAATTAAAAAAAAAAAAGGTGTTTTTATAAAAATTAAAAAAA
sequence update 1998. 3.20
Translated Amino Acid sequence 
---YKKRGVNWIVVGDENYGEGSSREHAALEPRHLGGKAILVKSFARIHETNLKKQGILP
LTFANPSDYDKLSGDDRISIIGLKDLAPGKQLTLIVKSAKQGSEFEIKANHTLNAGQIEW
FKAGSALNYIKSEKAKKN*ilikkkkgvfikikk
Translated Amino Acid sequence (All Frames) 
Frame A:
---YKKRGVNWIVVGDENYGEGSSREHAALEPRHLGGKAILVKSFARIHETNLKKQGILP
LTFANPSDYDKLSGDDRISIIGLKDLAPGKQLTLIVKSAKQGSEFEIKANHTLNAGQIEW
FKAGSALNYIKSEKAKKN*ilikkkkgvfikikk


Frame B:
---trnvvsigsslvmktmvkvhpvnmlpsnhvisvvklsslnhllvstkpisrnkvsyh
*pllthlitinslvtivfqslvskilpqvnnslsllnllnkvlnlklklitp*mlvksng
sklvpl*iilnqkkpkkikf*lkkkkvfl*klkk


Frame C:
---qetwcqldrrw**klw*rfip*tccprttssrw*sypr*iicsyprnqsqetrylti
nlc*pi*lr*tlw*rsyfnhwsqrscpr*tthshc*ic*trf*i*n*s*shpecwsnrmv
qswfrfkly*irksqkklnfn*kkkrcfykn*k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLA853 (SLA853Q) /CSM/SL/SLA8-C/SLA853Q.Seq.d/                        771   0.0
VHJ814 (VHJ814Q) /CSM/VH/VHJ8-A/VHJ814Q.Seq.d/                        747   0.0
SLG678 (SLG678Q) /CSM/SL/SLG6-D/SLG678Q.Seq.d/                        747   0.0
FC-BG22 (FC-BG22Q) /CSM/FC/FC-BG/FC-BG22Q.Seq.d/                      747   0.0
SLA476 (SLA476Q) /CSM/SL/SLA4-D/SLA476Q.Seq.d/                        739   0.0
VHO133 (VHO133Q) /CSM/VH/VHO1-B/VHO133Q.Seq.d/                        731   0.0
VHJ504 (VHJ504Q) /CSM/VH/VHJ5-A/VHJ504Q.Seq.d/                        731   0.0
VHC367 (VHC367Q) /CSM/VH/VHC3-C/VHC367Q.Seq.d/                        731   0.0
VHJ867 (VHJ867Q) /CSM/VH/VHJ8-C/VHJ867Q.Seq.d/                        708   0.0
VHD386 (VHD386Q) /CSM/VH/VHD3-D/VHD386Q.Seq.d/                        702   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU033460) Dictyostelium discoideum slug cDNA, clone SLA853.      733   0.0    1
(AU284674) Dictyostelium discoideum gamete cDNA clone:FC-BG2...   710   0.0    1
(AU039889) Dictyostelium discoideum slug cDNA, clone SLG678.      710   0.0    1
(BJ442525) Dictyostelium discoideum cDNA clone:ddv50l04, 3' ...   710   0.0    1
(C25574) Dictyostelium discoideum slug cDNA, clone SLA476.        702   0.0    1
(BJ437847) Dictyostelium discoideum cDNA clone:ddv35f17, 3' ...   690   0.0    1
(BJ445359) Dictyostelium discoideum cDNA clone:ddv59a09, 3' ...   642   0.0    2
(BJ442499) Dictyostelium discoideum cDNA clone:ddv50g01, 3' ...   668   0.0    2
(BJ438430) Dictyostelium discoideum cDNA clone:ddv37l21, 3' ...   668   0.0    1
(BJ385501) Dictyostelium discoideum cDNA clone:ddc55m02, 3' ...   620   0.0    2
dna update 2009. 1.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC058049_1(BC058049|pid:none) Danio rerio aconitase 2, mitochond...   193   2e-48
L25599_7(L25599|pid:none) Caenorhabditis elegans cosmid F54H12, ...   191   6e-48
L25599_8(L25599|pid:none) Caenorhabditis elegans cosmid F54H12, ...   191   6e-48
S44831(S44831)F54H12.1 protein - Caenorhabditis elegans               191   6e-48
AB105050_1(AB105050|pid:none) Antheraea yamamai mRNA for hypothe...   187   7e-47
(P49609) RecName: Full=Aconitate hydratase, mitochondrial;      ...   186   2e-46
AJ245736_1(AJ245736|pid:none) Daphnia pulex mRNA for aconitase.       186   2e-46
Z49931_1(Z49931|pid:none) B.taurus mRNA for mitochondrial aconit...   186   3e-46
DQ468384_1(DQ468384|pid:none) Bos taurus BTA05 5597 genomic sequ...   186   3e-46
BC102642_1(BC102642|pid:none) Bos taurus aconitase 2, mitochondr...   186   3e-46
protein update 2009. 5.31
PSORT 

 psg: 0.86  gvh: 0.42  alm: 0.45  top: 0.10  tms: 0.00  mit: 0.21  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 24.0 %: mitochondrial
	 16.0 %: cytoplasmic
	  8.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for SLA853 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLA853Z
3' end seq. 
>SLA853Z.Seq
----------CTACAAGAAACGTGGTGTCAATTGGATCGTCGTTGGTGATGAAAACTATG
GTGAAGGTTCATCCCGTGAACATGCTGCCCTCGAACCACGTCATCTCGGTGGTAAAGCTA
TCCTCGTTAAATCATTTGCTCGTATCCACGAAACCAATCTCAAGAAACAAGGTATCTTAC
CATTAACCTTTGCTAACCCATCTGATTACGATAAACTCTCTGGTGACGATCGTATTTCAA
TCATTGGTCTCAAAGATCTTGCCCCAGGTAAACAACTCACTCTCATTGTTAAATCTGCTA
AACAAGGTTCTGAATTTGAAATTAAAGCTAATCACACCCTGAATGCTGGTCAAATCGAAT
GGTTCAAAGCTGGTTCCGCTTTAAATTATATTAAATCAGAAAAAGCCAAAAAAAATTAAA
TTTTAATTAAAAAAAAAAAAGGTGTTTTTATAAAAATTAAAAAAA
Length of 3' end seq. 455
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -