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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLA767
Library SL
(Link to library)
Clone ID SLA767
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16327-1
Original site URL
Representative seq. ID SLA767E
(Link to Original site)
Representative DNA sequence 
>SLA767 (SLA767Q) /CSM/SL/SLA7-C/SLA767Q.Seq.d/
CCAGCTGTAACAAATACATTTACTTGCGCTGATCAAACTTCTTCACATGCACTCGGTTCT
GATTGGAGTGGAGTTTGTAAAATCACTGCCACACCCGCACCAACAGTTACACCAACAGTT
ACACCAACAGTTACACCAACAGTAACACCAACACCAACAAATACACCAAATCCAACCCCA
TCCCAAACATCAACAACAACTGGTTCTGCTTCAACTGTTGTTGCAAGTTTATCACTCATT
ATTTTCTCAATGATTCTTTCCCTTTGTTAATTTTAAAAATAACAAATGGTAAAAATAACA
AATGGTAAAAATTATTTGGCATTTTCAAGTACAATTTTAAATTTTTCAAAAAAAAATAAA
ATTAAATAAATAATTAAATAAATTAATTAATAAAAAAAATAAAATTAAAACTTTTTTAAT
TTAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1998. 7.15
Translated Amino Acid sequence 
PAVTNTFTCADQTSSHALGSDWSGVCKITATPAPTVTPTVTPTVTPTVTPTPTNTPNPTP
SQTSTTTGSASTVVASLSLIIFSMILSLC*f*k*qmvkitngknylafsstilnfskknk
ik*iik*in**kk*n*nffnlkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
PAVTNTFTCADQTSSHALGSDWSGVCKITATPAPTVTPTVTPTVTPTVTPTPTNTPNPTP
SQTSTTTGSASTVVASLSLIIFSMILSLC*f*k*qmvkitngknylafsstilnfskknk
ik*iik*in**kk*n*nffnlkkkkkkkk


Frame B:
ql*qihllalikllhmhsvligvefvkslphphqqlhqqlhqqlhqq*hqhqqihqiqph
pkhqqqlvllqlllqvyhslfsq*ffpfvnfknnkw*k*qmvkiiwhfqvqf*ifqkkik
lnk*lnklinkknkiktfli*kkkkkkkk


Frame C:
scnkyiylr*snfftctrf*lewsl*nhchtrtnsytnsytnsytnsntntnkytksnpi
pninnnwfcfnccckfithyflndsfpllilkitngknnkw*klfgifkynfkffkkk*n
*inn*in*likkiklklf*fkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM831 (SSM831Q) /CSM/SS/SSM8-B/SSM831Q.Seq.d/                        224   9e-58
SSM525 (SSM525Q) /CSM/SS/SSM5-B/SSM525Q.Seq.d/                        224   9e-58
SSL705 (SSL705Q) /CSM/SS/SSL7-A/SSL705Q.Seq.d/                        224   9e-58
SSL491 (SSL491Q) /CSM/SS/SSL4-D/SSL491Q.Seq.d/                        224   9e-58
SSK763 (SSK763Q) /CSM/SS/SSK7-C/SSK763Q.Seq.d/                        224   9e-58
SSJ770 (SSJ770Q) /CSM/SS/SSJ7-C/SSJ770Q.Seq.d/                        224   9e-58
SSJ740 (SSJ740Q) /CSM/SS/SSJ7-B/SSJ740Q.Seq.d/                        224   9e-58
SSJ671 (SSJ671Q) /CSM/SS/SSJ6-C/SSJ671Q.Seq.d/                        224   9e-58
SSI759 (SSI759Q) /CSM/SS/SSI7-C/SSI759Q.Seq.d/                        224   9e-58
SSI680 (SSI680Q) /CSM/SS/SSI6-D/SSI680Q.Seq.d/                        224   9e-58
own update 2001. 8.26
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU061952) Dictyostelium discoideum slug cDNA, clone SLG757.      174   1e-75  2
(AU039513) Dictyostelium discoideum slug cDNA, clone SLA767.      174   1e-75  2
(BJ356068) Dictyostelium discoideum cDNA clone:dda59k02, 3' ...   174   1e-75  2
(BJ337834) Dictyostelium discoideum cDNA clone:dda59l02, 5' ...   174   1e-75  2
(BJ341325) Dictyostelium discoideum cDNA clone:dda6l05, 3' e...   174   2e-75  2
(BJ399383) Dictyostelium discoideum cDNA clone:dds5o14, 3' e...   174   2e-75  2
(C89888) Dictyostelium discoideum slug cDNA, clone SSG582.        174   2e-75  2
(BJ382433) Dictyostelium discoideum cDNA clone:ddc44a20, 3' ...   174   2e-75  2
(AU033875) Dictyostelium discoideum slug cDNA, clone SLB553.      174   2e-75  2
(AU061817) Dictyostelium discoideum slug cDNA, clone SLG216.      174   2e-75  2
dna update 2009. 1.29
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 322,833,354
protein update 2009. 7. 4
PSORT 

 psg: 0.75  gvh: 0.53  alm: 0.21  top: 0.50  tms: 0.07  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 16.0 %: nuclear
	 16.0 %: vesicles of secretory system
	 12.0 %: plasma membrane
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  8.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for SLA767 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLA767E
Full length Seq. 
>SLA767E.Seq
CCAGCTGTAACAAATACATTTACTTGCGCTGATCAAACTTCTTCACATGCACTCGGTTCT
GATTGGAGTGGAGTTTGTAAAATCACTGCCACACCCGCACCAACAGTTACACCAACAGTT
ACACCAACAGTTACACCAACAGTAACACCAACACCAACAAATACACCAAATCCAACCCCA
TCCCAAACATCAACAACAACTGGTTCTGCTTCAACTGTTGTTGCAAGTTTATCACTCATT
ATTTTCTCAATGATTCTTTCCCTTTGTTAATTTTAAAAATAACAAATGGTAAAAATAACA
AATGGTAAAAATTATTTGGCATTTTCAAGTACAATTTTAAATTTTTCAAAAAAAAATAAA
ATTAAATAAATAATTAAATAAATTAATTAATAAAAAAAATAAAATTAAAACTTTTTTAAT
TTAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of full length seq. 449