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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLA715
Library SL
(Link to library)
Clone ID SLA715
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16417-1
Original site URL
Representative seq. ID SLA715Z
(Link to Original site)
Representative DNA sequence 
>SLA715 (SLA715Q) /CSM/SL/SLA7-A/SLA715Q.Seq.d/
XXXXXXXXXXGGACCAACAGCAACCCCAAACGACCAAAACCTAACACCAAAAACAAGCTC
TGAACCAGCAGCAACCGCAGCATCAACCACAGGCAGAAACCCAAGAAACCCAACAAGGGG
AGCTCCAACTAACACACCAACGCCAACCACCCCACCAGAAGAACCAGCCGCCGGAGGCGA
AGATTCAAGCGCAAGCCCCAAACATACCACGGCAATCATTTTTGAAGGCGGGGGGGGATC
CAAAGAGAAGATAATTAGGGAGGGGGGAGGAGTAATGGTTTTTTTTTTATATATTTTTTT
TAAATAATAATAATAAAAAAAATTATAAAAATAAAAAAATAAATACAAATCTAA
sequence update 1998. 1.20
Translated Amino Acid sequence 
---PTATPNDQNLTPKTSSEPAATAASTTGRNPRNPTRGAPTNTPTPTTPPEEPAAGGED
SSASPKHTTAIIFEGGGGSKEKIIREGGGVMVFFLYIFFK****kkl*k*knkyks
Translated Amino Acid sequence (All Frames) 
Frame A:
---dqqqpqttkt*hqkqalnqqqpqhqpqaetqetqqgelqlthqrqpphqknqppeak
iqaqapniprqsflkaggdpkrr*lgrgee*wfffyifflnnnnkknyknkkintnl


Frame B:
---tnsnpkrpkpntknkl*tssnrsinhrqkpkkpnkgssn*htnanhptrrtsrrrrr
fkrkpqtyhgnhf*rrggiqredn*gggrsngfffiyff*iiiikkiikikk*iqi*


Frame C:
---PTATPNDQNLTPKTSSEPAATAASTTGRNPRNPTRGAPTNTPTPTTPPEEPAAGGED
SSASPKHTTAIIFEGGGGSKEKIIREGGGVMVFFLYIFFK****kkl*k*knkyks
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLA715 (SLA715Q) /CSM/SL/SLA7-A/SLA715Q.Seq.d/                        484   e-136
SSG715 (SSG715Q) /CSM/SS/SSG7-A/SSG715Q.Seq.d/                        125   5e-28
SLK604 (SLK604Q) /CSM/SL/SLK6-A/SLK604Q.Seq.d/                        125   5e-28
SLH864 (SLH864Q) /CSM/SL/SLH8-C/SLH864Q.Seq.d/                        125   5e-28
SLH856 (SLH856Q) /CSM/SL/SLH8-C/SLH856Q.Seq.d/                        125   5e-28
SLH849 (SLH849Q) /CSM/SL/SLH8-C/SLH849Q.Seq.d/                        125   5e-28
SLG873 (SLG873Q) /CSM/SL/SLG8-D/SLG873Q.Seq.d/                        125   5e-28
SLG301 (SLG301Q) /CSM/SL/SLG3-A/SLG301Q.Seq.d/                        125   5e-28
SLF348 (SLF348Q) /CSM/SL/SLF3-B/SLF348Q.Seq.d/                        125   5e-28
SLE270 (SLE270Q) /CSM/SL/SLE2-C/SLE270Q.Seq.d/                        125   5e-28
own update 2004. 7.26
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU033392) Dictyostelium discoideum slug cDNA, clone SLA715.      430   e-134  2
(AU061433) Dictyostelium discoideum slug cDNA, clone SLE229.      125   1e-24  1
(AU052935) Dictyostelium discoideum slug cDNA, clone SLF348.      125   1e-24  1
(AU052765) Dictyostelium discoideum slug cDNA, clone SLK604.      125   1e-24  1
(AU052509) Dictyostelium discoideum slug cDNA, clone SLD436.      125   1e-24  1
(AU052458) Dictyostelium discoideum slug cDNA, clone SLD352.      125   1e-24  1
(AU052357) Dictyostelium discoideum slug cDNA, clone SLD189.      125   1e-24  1
(AU040044) Dictyostelium discoideum slug cDNA, clone SLA310.      125   1e-24  1
(AU039974) Dictyostelium discoideum slug cDNA, clone SLG873.      125   1e-24  1
(AU039738) Dictyostelium discoideum slug cDNA, clone SLG301.      125   1e-24  1
dna update 2009. 1.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB178537_1(AB178537|pid:none) Cyprinid herpesvirus 3 ORF1, ORF2,...    32   8.6
protein update 2009. 1.19
PSORT 

 psg: 0.75  gvh: 0.41  alm: 0.34  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: cytoplasmic
	 28.0 %: nuclear
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for SLA715 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLA715Z
3' end seq. 
>SLA715Z.Seq
----------GGACCAACAGCAACCCCAAACGACCAAAACCTAACACCAAAAACAAGCTC
TGAACCAGCAGCAACCGCAGCATCAACCACAGGCAGAAACCCAAGAAACCCAACAAGGGG
AGCTCCAACTAACACACCAACGCCAACCACCCCACCAGAAGAACCAGCCGCCGGAGGCGA
AGATTCAAGCGCAAGCCCCAAACATACCACGGCAATCATTTTTGAAGGCGGGGGGGGATC
CAAAGAGAAGATAATTAGGGAGGGGGGAGGAGTAATGGTTTTTTTTTTATATATTTTTTT
TAAATAATAATAATAAAAAAAATTATAAAAATAAAAAAATAAATACAAATCTAA
Length of 3' end seq. 344
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -