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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLA708
Library SL
(Link to library)
Clone ID SLA708
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16368-1
Original site URL
Representative seq. ID SLA708Z
(Link to Original site)
Representative DNA sequence 
>SLA708 (SLA708Q) /CSM/SL/SLA7-A/SLA708Q.Seq.d/
XXXXXXXXXXCATCAACTGTCGCAACTACAACCTCTGCAACTACTGCAGGTACAACAACT
GGTGGAACTACAACTGGTGGTTCAACTTCTGATAGTAGTGCTGCTTCCTCAGCCGATAGT
AGCGCTGCCTCCTCATCACCATCAAGCAGTGCTGCTTCAAGTGCCGCTTCAAGTGAACCA
TCAAGTAGCGCCGCTTCAAGTAGTGCTCCATCCTCTGCTTCAAGTAGCGCTCCATCCTCT
GCCTCAAGTAGTGCTCCATCATCATCAGCTTCAAGTTCAGCTGCATCATCAGCTGCAAGC
TCAGAAAGCTCAGAAAGCTCATCAGCCACTTCATAAATAAAACTTTGATCAAAAAAAAAA
AAAAA
sequence update 1998. 1.20
Translated Amino Acid sequence 
---QLSQLQPLQLLQVQQLVELQLVVQLLIVVLLPQPIVALPPHHHQAVLLQVPLQVNHQ
VAPLQVVLHPLLQVALHPLPQVVLHHHQLQVQLHHQLQAQKAQKAHQPLHK*nfdqkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---incrnynlcnycrynnwwnynwwfnf***ccflsr**rcllitikqccfkcrfk*ti
k*rrfk*csilcfk*rsilclk*csiiisfkfsciiscklrklrklishfinktlikkkk
k


Frame B:
---stvatttsattagtttggtttggstsdssaassadssaassspsssaassaasseps
ssaasssapssasssapssasssapsssasssaassaassessesssats*ikl*skkkk


Frame C:
---QLSQLQPLQLLQVQQLVELQLVVQLLIVVLLPQPIVALPPHHHQAVLLQVPLQVNHQ
VAPLQVVLHPLLQVALHPLPQVVLHHHQLQVQLHHQLQAQKAQKAHQPLHK*nfdqkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM203 (SSM203Q) /CSM/SS/SSM2-A/SSM203Q.Seq.d/                        674   0.0
SSG603 (SSG603Q) /CSM/SS/SSG6-A/SSG603Q.Seq.d/                        674   0.0
SSG344 (SSG344Q) /CSM/SS/SSG3-B/SSG344Q.Seq.d/                        674   0.0
SLK616 (SLK616Q) /CSM/SL/SLK6-A/SLK616Q.Seq.d/                        674   0.0
SLJ215 (SLJ215Q) /CSM/SL/SLJ2-A/SLJ215Q.Seq.d/                        674   0.0
SLI751 (SLI751Q) /CSM/SL/SLI7-C/SLI751Q.Seq.d/                        674   0.0
SLI612 (SLI612Q) /CSM/SL/SLI6-A/SLI612Q.Seq.d/                        674   0.0
SLI293 (SLI293Q) /CSM/SL/SLI2-D/SLI293Q.Seq.d/                        674   0.0
SLI237 (SLI237Q) /CSM/SL/SLI2-B/SLI237Q.Seq.d/                        674   0.0
SLI174 (SLI174Q) /CSM/SL/SLI1-D/SLI174Q.Seq.d/                        674   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(D13973) Dictyostelium discoideum gene for Dp87 protein, com...   674   0.0    1
(AU053604) Dictyostelium discoideum slug cDNA, clone SLJ215.      674   0.0    1
(AU053487) Dictyostelium discoideum slug cDNA, clone SLI751.      674   0.0    1
(AU053417) Dictyostelium discoideum slug cDNA, clone SLI612.      674   0.0    1
(AU053272) Dictyostelium discoideum slug cDNA, clone SLI293.      674   0.0    1
(AU053254) Dictyostelium discoideum slug cDNA, clone SLI237.      674   0.0    1
(AU053224) Dictyostelium discoideum slug cDNA, clone SLI174.      674   0.0    1
(AU052983) Dictyostelium discoideum slug cDNA, clone SLF438.      674   0.0    1
(AU052823) Dictyostelium discoideum slug cDNA, clone SLF168.      674   0.0    1
(AU052770) Dictyostelium discoideum slug cDNA, clone SLK616.      674   0.0    1
dna update 2009. 1.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU247178_1(EU247178|pid:none) Lycosa singoriensis clone LSsin992...    33   3.0
protein update 2009. 1.19
PSORT 

 psg: 0.77  gvh: 0.80  alm: 0.23  top: 0.70  tms: 0.07  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.23  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SLA708 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLA708Z
3' end seq. 
>SLA708Z.Seq
----------CATCAACTGTCGCAACTACAACCTCTGCAACTACTGCAGGTACAACAACT
GGTGGAACTACAACTGGTGGTTCAACTTCTGATAGTAGTGCTGCTTCCTCAGCCGATAGT
AGCGCTGCCTCCTCATCACCATCAAGCAGTGCTGCTTCAAGTGCCGCTTCAAGTGAACCA
TCAAGTAGCGCCGCTTCAAGTAGTGCTCCATCCTCTGCTTCAAGTAGCGCTCCATCCTCT
GCCTCAAGTAGTGCTCCATCATCATCAGCTTCAAGTTCAGCTGCATCATCAGCTGCAAGC
TCAGAAAGCTCAGAAAGCTCATCAGCCACTTCATAAATAAAACTTTGATCAAAAAAAAAA
AAAAA
Length of 3' end seq. 355
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -