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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLA681
Library SL
(Link to library)
Clone ID SLA681
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16510-1
Original site URL
Representative seq. ID SLA681F
(Link to Original site)
Representative DNA sequence 
>SLA681 (SLA681Q) /CSM/SL/SLA6-D/SLA681Q.Seq.d/
ATCAACCATCGCAGGCTCAACCATCGCTTCAATTGCTTCTACTATTGCTTCAACTGGTTC
AACTGGTGCTACTCCACCATGTTCCGTTGCTCAATGTCCAACTGGTTATGTTTGTGTCGC
TCAAAATAATGTAGCTGTTTGTTTGCCAAGACCTACCACTACCACCGGTAGCACATCTGA
CTCGTCTGCCCTTGGTTCAACCTCTGAAAGCTCTGCCTCTGGTTCCTCTGCTGTTTCAAG
CTCTGCCTCTGGTTCTTCTGCTGCTTCATCTTCACCATCATCATCTGCTGCAAGCTCTTC
TCCATCTTCATCTGCTGCAAGCTCTTCTCCATCTTCATCTGCTGCAAGCTCTTCCCCATC
TTCATCTGCATCATCAAGCTCTTCCCCATCTTCATCTGCATCATCAAGCTCTGCCCCATC
TTCATCTGCATCATCAAGCTCTGCTCCATCTTCATCTGCATCATCTTCATCTGCATCATC
TTCATCTGCATCATCTGCAGCAACTACAGCTGCAACTACAATTGCAACTACAGCTGCAAC
TACAACTGCAACTACAACCGCAACCACAGCTACAACCACAGCCACAACCACAGCTACAAC
CACAGCTGCAACCATAGCTACAACCACAGCTGCAACTACAACTTGCAACTACAACCGCAA
CCACAGCTACAACCACAGCTACAACCACAGCTACCTCTTAAATTTAATCAAAAAXXXXXX
XXXX
sequence update 1999. 2.19
Translated Amino Acid sequence 
STIAGSTIASIASTIASTGSTGATPPCSVAQCPTGYVCVAQNNVAVCLPRPTTTTGSTSD
SSALGSTSESSASGSSAVSSSASGSSAASSSPSSSAASSSPSSSAASSSPSSSAASSSPS
SSASSSSSPSSSASSSSAPSSSASSSSAPSSSASSSSASSSSASSAATTAATTIATTAAT
TTATTTATTATTTATTTATTTAATIATTTAATTTCNYNRNHSYNHSYNHSYLLNLIK---
Translated Amino Acid sequence (All Frames) 
Frame A:
inhrrlnhrfncfyycfnwfnwcystmfrcsmsnwlclcrsk*csclfaktyhyhr*hi*
lvcpwfnl*klclwflccfklclwffccfiftiiiccklfsificcklfsificcklfpi
ficiiklfpificiiklcpificiiklcsificiificiificiicsnyscnyncnyscn
yncnynrnhsynhshnhsynhscnhsynhscnynlqlqpqpqlqpqlqpqlplkfnq---


Frame B:
STIAGSTIASIASTIASTGSTGATPPCSVAQCPTGYVCVAQNNVAVCLPRPTTTTGSTSD
SSALGSTSESSASGSSAVSSSASGSSAASSSPSSSAASSSPSSSAASSSPSSSAASSSPS
SSASSSSSPSSSASSSSAPSSSASSSSAPSSSASSSSASSSSASSAATTAATTIATTAAT
TTATTTATTATTTATTTATTTAATIATTTAATTTCNYNRNHSYNHSYNHSYLLNLIK---


Frame C:
qpsqaqpslqllllllqlvqlvllhhvpllnvqlvmfvslkim*lfvcqdlplppvahlt
rlplvqplkalplvpllfqalplvllllhlhhhhllqallhlhllqallhlhllqalphl
hlhhqalphlhlhhqalphlhlhhqallhlhlhhlhlhhlhlhhlqqlqlqlqlqlqlql
qlqlqpqpqlqpqpqpqlqpqlqp*lqpqlqlqlatttattatttatttats*i*sk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLA681 (SLA681Q) /CSM/SL/SLA6-D/SLA681Q.Seq.d/                        825   0.0
AHM521 (AHM521Q) /CSM/AH/AHM5-A/AHM521Q.Seq.d/                        817   0.0
CHP677 (CHP677Q) /CSM/CH/CHP6-D/CHP677Q.Seq.d/                        811   0.0
CHF620 (CHF620Q) /CSM/CH/CHF6-A/CHF620Q.Seq.d/                        781   0.0
CHG520 (CHG520Q) /CSM/CH/CHG5-A/CHG520Q.Seq.d/                        775   0.0
CHL207 (CHL207Q) /CSM/CH/CHL2-A/CHL207Q.Seq.d/                        728   0.0
SFJ657 (SFJ657Q) /CSM/SF/SFJ6-C/SFJ657Q.Seq.d/                        710   0.0
SFI638 (SFI638Q) /CSM/SF/SFI6-B/SFI638Q.Seq.d/                        692   0.0
CHL411 (CHL411Q) /CSM/CH/CHL4-A/CHL411Q.Seq.d/                        680   0.0
CHE870 (CHE870Q) /CSM/CH/CHE8-C/CHE870Q.Seq.d/                        680   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU060245) Dictyostelium discoideum slug cDNA, clone SLA681.      500   0.0    3
(X16491) Dictyostelium discoideum sp96 gene for spore coat p...   484   e-177  4
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...   492   e-174  4
(C25558) Dictyostelium discoideum slug cDNA, clone SLA405.        438   e-165  4
(BJ355220) Dictyostelium discoideum cDNA clone:dda56i05, 3' ...   492   e-145  2
(BJ389338) Dictyostelium discoideum cDNA clone:dds18k10, 5' ...   492   e-145  2
(BJ383671) Dictyostelium discoideum cDNA clone:ddc53i20, 3' ...   486   e-143  2
(BJ378871) Dictyostelium discoideum cDNA clone:ddc33h03, 3' ...   492   e-140  3
(BJ378868) Dictyostelium discoideum cDNA clone:ddc33g06, 3' ...   303   e-136  5
(BJ379507) Dictyostelium discoideum cDNA clone:ddc35g05, 3' ...   450   e-134  3
dna update 2009. 1.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P14328) RecName: Full=Spore coat protein SP96;  &AC117075_49(AC...    62   2e-08
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -...    58   2e-07
Z81540_14(Z81540|pid:none) Caenorhabditis elegans Cosmid F46B3, ...    35   1.7
T22274(T22274)hypothetical protein F46B3.9 - Caenorhabditis eleg...    34   5.0
Z81540_13(Z81540|pid:none) Caenorhabditis elegans Cosmid F46B3, ...    33   8.6
protein update 2009. 1.19
PSORT 

 psg: 0.91  gvh: 0.54  alm: 0.43  top: 0.47  tms: 0.00  mit: 0.45  mip: 0.09
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: mitochondrial
	 32.0 %: nuclear
	 12.0 %: extracellular, including cell wall
	  8.0 %: cytoplasmic
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal

>> prediction for SLA681 is mit
5' end seq. ID SLA681F
5' end seq. 
>SLA681F.Seq
ATCAACCATCGCAGGCTCAACCATCGCTTCAATTGCTTCTACTATTGCTTCAACTGGTTC
AACTGGTGCTACTCCACCATGTTCCGTTGCTCAATGTCCAACTGGTTATGTTTGTGTCGC
TCAAAATAATGTAGCTGTTTGTTTGCCAAGACCTACCACTACCACCGGTAGCACATCTGA
CTCGTCTGCCCTTGGTTCAACCTCTGAAAGCTCTGCCTCTGGTTCCTCTGCTGTTTCAAG
CTCTGCCTCTGGTTCTTCTGCTGCTTCATCTTCACCATCATCATCTGCTGCAAGCTCTTC
TCCATCTTCATCTGCTGCAAGCTCTTCTCCATCTTCATCTGCTGCAAGCTCTTCCCCATC
TTCATCTGCATCATCAAGCTCTTCCCCATCTTCATCTGCATCATCAAGCTCTGCCCCATC
TTCATCTGCATCATCAAGCTCTGCTCCATCTTCATCTGCATCATCTTCATCTGCATCATC
TTCATCTGCATCATCTGCAGCAACTACAGCTGCAACTACAATTGCAACTACAGCTGCAAC
TACAACTGCAACTACAACCGCAACCACAGCTACAACCACAGCCACAACCACAGCTACAAC
CACAGCTGCAACCATAGCTACAACCACAGCTGCAACTACAACTTGCAACTACAACCGCAA
CCACAGCTACAACCACAGCTACAACCACAGCTACCTCTTAAATTTAATCAAAAA------
----
Length of 5' end seq. 714
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -