SLA608
Library SL
(Link to library)
Clone ID SLA608
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16279-1
Original site URL
Representative seq. ID SLA608F
(Link to Original site)
Representative DNA sequence
>SLA608 (SLA608Q) /CSM/SL/SLA6-A/SLA608Q.Seq.d/
CACCTGGAATGGTATTGTAACTACCGGCGATTGGTGAGTCAACCATTTGTGGTGATATTC
GTTTAACTCCATTTCTTTCATATCATAGAATGGAGTTAAACGAATATCACCACAAATGGT
TGACTCACCTGGAATGGTATTCGTTTAACTCCATTCTATGATATGAAAGAAATGCGTGCA
AAAGTTGAAGGTTATATCAAAGATATCAATGCCAATATCACTGAACTTCGTAATAGAGGT
CCATACAGTAAATATGATGTACCANNCTCTGAAGGTGTTGAACCAGTCAAAGGTTCAGTC
TCTATTGAATGGTTAGGTGAAGCATCAGCTGGTGTCGCTTGTAAACTCGACTCTAATGGT
TACAAAGCACTTGGTAAAGCTACTTCTGAAATTAAAGGTTCATTAACTCCAGTTGCAACT
TGTGGTACTCTTCCTTTGGTTCGTAATCTCCXXXXXXXXXX
sequence update 1999. 2.19
Translated Amino Acid sequence
hlewycnyrrlvsqpfvvifv*lhffhiiews*tnittng*LTWNGIRLTPFYDMKEMRA
KVEGYIKDINANITELRNRGPYSKYDVPXSEGVEPVKGSVSIEWLGEASAGVACKLDSNG
YKALGKATSEIKGSLTPVATCGTLPLVRNL---


Translated Amino Acid sequence (All Frames)
Frame A:
hlewycnyrrlvsqpfvvifv*lhffhiiews*tnittng*LTWNGIRLTPFYDMKEMRA
KVEGYIKDINANITELRNRGPYSKYDVPXSEGVEPVKGSVSIEWLGEASAGVACKLDSNG
YKALGKATSEIKGSLTPVATCGTLPLVRNL---


Frame B:
twngivttgdw*vnhlw*ysfnsisfis*ngvkrispqmvdspgmvfv*lhsmi*kkcvq
klkviskismpislnfvievhtvnmmyxxlkvlnqskvqsllng*vkhqlvslvnstlmv
tkhlvklllklkvh*lqlqlvvlflwfvi---


Frame C:
pgmvl*lpaigesticgdirltpflsyhrmelneyhhkwlthlewysfnsil*yernack
s*rlyqryqcqyh*ts**rsiq*i*ctxl*rc*tsqrfsly*mvr*siswcrl*trl*wl
qstw*syf*n*rfinsscnlwyssfgs*s---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLA608 (SLA608Q) /CSM/SL/SLA6-A/SLA608Q.Seq.d/ 882 0.0
VSJ843 (VSJ843Q) /CSM/VS/VSJ8-B/VSJ843Q.Seq.d/ 579 e-164
VHJ351 (VHJ351Q) /CSM/VH/VHJ3-C/VHJ351Q.Seq.d/ 579 e-164
VHC429 (VHC429Q) /CSM/VH/VHC4-B/VHC429Q.Seq.d/ 579 e-164
VFO803 (VFO803Q) /CSM/VF/VFO8-A/VFO803Q.Seq.d/ 579 e-164
VFO584 (VFO584Q) /CSM/VF/VFO5-D/VFO584Q.Seq.d/ 579 e-164
VFO572 (VFO572Q) /CSM/VF/VFO5-C/VFO572Q.Seq.d/ 579 e-164
VFO430 (VFO430Q) /CSM/VF/VFO4-B/VFO430Q.Seq.d/ 579 e-164
VFO410 (VFO410Q) /CSM/VF/VFO4-A/VFO410Q.Seq.d/ 579 e-164
VFO253 (VFO253Q) /CSM/VF/VFO2-C/VFO253Q.Seq.d/ 579 e-164

own update 2002.12.10
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU060223) Dictyostelium discoideum slug cDNA, clone SLA608. 882 0.0 1
(BJ430846) Dictyostelium discoideum cDNA clone:ddv9d01, 3' e... 579 e-163 2
(AU284590) Dictyostelium discoideum gamete cDNA clone:FC-BE0... 579 e-161 1
(AU284501) Dictyostelium discoideum gamete cDNA clone:FC-BA0... 579 e-161 1
(AU270559) Dictyostelium discoideum vegetative cDNA clone:VS... 579 e-161 1
(AU051824) Dictyostelium discoideum slug cDNA, clone SSA878. 579 e-161 1
(AU040026) Dictyostelium discoideum slug cDNA, clone SLH474. 579 e-161 1
(AU033606) Dictyostelium discoideum slug cDNA, clone SLB223. 579 e-161 1
(C94423) Dictyostelium discoideum slug cDNA, clone SSK781. 579 e-161 1
(BJ442334) Dictyostelium discoideum cDNA clone:ddv49f13, 3' ... 579 e-161 1
dna update 2009. 1.26
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54638) RecName: Full=Acetylornithine deacetylase; EC=... 202 3e-51
U23957_1(U23957|pid:none) Dictyostelium discoideum P52D mRNA, co... 199 2e-50
AB036420_1(AB036420|pid:none) Citrullus lanatus mRNA for DIP-1, ... 99 2e-22
AF170086_1(AF170086|pid:none) Cucurbita pepo silverleaf whitefly... 97 5e-21
AF360346_1(AF360346|pid:none) Arabidopsis thaliana putative N-ac... 101 9e-21
AL021889_1(AL021889|pid:none) Arabidopsis thaliana DNA chromosom... 101 9e-21
CP001325_366(CP001325|pid:none) Micromonas sp. RCC299 chromosome... 83 5e-17
AK101568_1(AK101568|pid:none) Oryza sativa Japonica Group cDNA c... 87 2e-16
CP000582_97(CP000582|pid:none) Ostreococcus lucimarinus CCE9901 ... 79 9e-16
CP000113_250(CP000113|pid:none) Myxococcus xanthus DK 1622, comp... 68 4e-11
protein update 2009. 5.31
PSORT

psg: 0.67 gvh: 0.28 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.24 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
36.0 %: nuclear
8.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vacuolar

>> prediction for SLA608 is cyt

5' end seq. ID SLA608F
5' end seq.
>SLA608F.Seq
CACCTGGAATGGTATTGTAACTACCGGCGATTGGTGAGTCAACCATTTGTGGTGATATTC
GTTTAACTCCATTTCTTTCATATCATAGAATGGAGTTAAACGAATATCACCACAAATGGT
TGACTCACCTGGAATGGTATTCGTTTAACTCCATTCTATGATATGAAAGAAATGCGTGCA
AAAGTTGAAGGTTATATCAAAGATATCAATGCCAATATCACTGAACTTCGTAATAGAGGT
CCATACAGTAAATATGATGTACCANNCTCTGAAGGTGTTGAACCAGTCAAAGGTTCAGTC
TCTATTGAATGGTTAGGTGAAGCATCAGCTGGTGTCGCTTGTAAACTCGACTCTAATGGT
TACAAAGCACTTGGTAAAGCTACTTCTGAAATTAAAGGTTCATTAACTCCAGTTGCAACT
TGTGGTACTCTTCCTTTGGTTCGTAATCTCC----------
Length of 5' end seq. 451
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -