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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLA579
Library SL
(Link to library)
Clone ID SLA579
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16510-1
Original site URL
Representative seq. ID SLA579E
(Link to Original site)
Representative DNA sequence 
>SLA579 (SLA579Q) /CSM/SL/SLA5-D/SLA579Q.Seq.d/
CATACTGCCNTCTTCCAGCTCTTCCCCNTCTTCATCTGCATCATCAAGCTCTGCCCCNTC
TTCATCTGCATCATCAGCTCTGCTCCATCTTCATCTGCCATCATCTTCATCTGCATCATC
TTCATCTGCATCATCTGCNGCAACTACAGCTGCANCTCCAATTGCAACTACAGCTGCAAC
TNCAACTGCAACTACAACCGCAACCACAGCTACAACCACAGCCACAACCACAGCTACAAC
CACAGCTGCAACCATAGCTACAACCACAGCTGCAACTACAACTGCAACTACAACCGCAAC
CACAGCTACAACCACAGCTACAACCACAGCTACCTCTTAAATTTAATCAAAAAACATTTT
TTATCAAGTATCACTACAATAATAATTTTAATAATAATAGTATCAAAAAATGATATTAAA
AATCCCCTTTTTTTCTCTATAATTTTTAAATTAANTATAAAATAAATAAAAAAAAATT
sequence update 1997. 6.21
Translated Amino Acid sequence 
HTAXFQLFPXFICIIKLCPXFICIISSAPSSSAIIFICIIFICIICXNYSCXSNCNYSCN
XNCNYNRNHSYNHSHNHSYNHSCNHSYNHSCNYNCNYNRNHSYNHSYNHSYLLNLIKKHF
LSSITTIIILIIIVSKNDIKNPLFFSIIFKLXIK*ikkn
Translated Amino Acid sequence (All Frames) 
Frame A:
HTAXFQLFPXFICIIKLCPXFICIISSAPSSSAIIFICIIFICIICXNYSCXSNCNYSCN
XNCNYNRNHSYNHSHNHSYNHSCNHSYNHSCNYNCNYNRNHSYNHSYNHSYLLNLIKKHF
LSSITTIIILIIIVSKNDIKNPLFFSIIFKLXIK*ikkn


Frame B:
ilpssssspsssassssapsssassallhlhlpssssassssassaattaaxpiattaat
xtatttattatttatttatttaatiatttaatttatttattatttatttats*i*sknif
yqvslq**f****yqkmilkipffsl*fln*x*nk*kki


Frame C:
ycxlpalpxlhlhhqalpxlhlhhqlcsifichhlhlhhlhlhhlxqlqlxlqlqlqlql
qlqlqpqpqlqpqpqpqlqpqlqp*lqpqlqlqlqlqpqpqlqpqlqpqlplkfnqktff
ikyhynnnfnnnsikk*y*kspfflynf*ixykinkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLA579 (SLA579Q) /CSM/SL/SLA5-D/SLA579Q.Seq.d/                        591   e-168
SSB820 (SSB820Q) /CSM/SS/SSB8-A/SSB820Q.Seq.d/                        583   e-166
SLK165 (SLK165Q) /CSM/SL/SLK1-C/SLK165Q.Seq.d/                        583   e-166
SLI557 (SLI557Q) /CSM/SL/SLI5-C/SLI557Q.Seq.d/                        583   e-166
SLI431 (SLI431Q) /CSM/SL/SLI4-B/SLI431Q.Seq.d/                        583   e-166
SLH738 (SLH738Q) /CSM/SL/SLH7-B/SLH738Q.Seq.d/                        583   e-166
SLH548 (SLH548Q) /CSM/SL/SLH5-B/SLH548Q.Seq.d/                        583   e-166
SLH472 (SLH472Q) /CSM/SL/SLH4-C/SLH472Q.Seq.d/                        583   e-166
SLH386 (SLH386Q) /CSM/SL/SLH3-D/SLH386Q.Seq.d/                        583   e-166
SLH314 (SLH314Q) /CSM/SL/SLH3-A/SLH314Q.Seq.d/                        583   e-166
own update 2001. 9.20
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU052130) Dictyostelium discoideum slug cDNA, clone SLA579.      313   e-144  4
(AU034239) Dictyostelium discoideum slug cDNA, clone SLC311.      313   e-134  4
(AU052966) Dictyostelium discoideum slug cDNA, clone SLF396.      313   e-134  4
(AU053398) Dictyostelium discoideum slug cDNA, clone SLI557.      313   e-133  4
(AU034057) Dictyostelium discoideum slug cDNA, clone SLB864.      313   e-133  4
(AU033607) Dictyostelium discoideum slug cDNA, clone SLB224.      313   e-133  4
(AU052240) Dictyostelium discoideum slug cDNA, clone SLA407.      313   e-133  4
(AU052178) Dictyostelium discoideum slug cDNA, clone SLA183.      313   e-133  4
(AU039413) Dictyostelium discoideum slug cDNA, clone SLH738.      313   e-133  4
(AU033469) Dictyostelium discoideum slug cDNA, clone SLA865.      313   e-133  4
dna update 2009. 1.26
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 154,171,046
protein update 2009. 7. 4
PSORT 

 psg: 0.95  gvh: 0.68  alm: 0.21  top: 0.70  tms: 0.13  mit: 0.63  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 32.0 %: endoplasmic reticulum
	 16.0 %: nuclear
	 16.0 %: plasma membrane
	 12.0 %: mitochondrial
	 12.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for SLA579 is end
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLA579E
Full length Seq. 
>SLA579E.Seq
CATACTGCCNTCTTCCAGCTCTTCCCCNTCTTCATCTGCATCATCAAGCTCTGCCCCNTC
TTCATCTGCATCATCAGCTCTGCTCCATCTTCATCTGCCATCATCTTCATCTGCATCATC
TTCATCTGCATCATCTGCNGCAACTACAGCTGCANCTCCAATTGCAACTACAGCTGCAAC
TNCAACTGCAACTACAACCGCAACCACAGCTACAACCACAGCCACAACCACAGCTACAAC
CACAGCTGCAACCATAGCTACAACCACAGCTGCAACTACAACTGCAACTACAACCGCAAC
CACAGCTACAACCACAGCTACAACCACAGCTACCTCTTAAATTTAATCAAAAAACATTTT
TTATCAAGTATCACTACAATAATAATTTTAATAATAATAGTATCAAAAAATGATATTAAA
AATCCCCTTTTTTTCTCTATAATTTTTAAATTAANTATAAAATAAATAAAAAAAAATT
Length of full length seq. 478